Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g0594200 | OGI:06066110 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:23357768-23360733 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CAACCACAATAGATAAGTGTCTTATAGATGGTAGAATTTGTATAGATTTGACATTTGAACTACATATGGTAAGACATTCATACGATGAAACCTTCAATGCTAACTCATGTAGTAGGTCATGCATAACGTAGTATGAAGACCCATCTTCTACATGTTTTTCAAAAAATCCATAGCTAACCAAATCATTCAATCGGCTCAATCCAATGTCTTCAATTTTCTTGTTTTGATCCTGTGAATGTAGGATGTCTAGTCCTATCCATAAGTGAATTATCTCATCACTAGCAAATTTATGGTCTTCAGGGAACATAGCACAATATGTAAAACATTGTTGCAGATGAAAAGGGAGATAATCGTAGCTAAGCTTTAATGCTGGCATAATATCATTCTCACCGGTTTGTAATTCCCATTCTTTACTTTCCAGGACACTTGTCCAATGTTCCAAATCAAGGTGATTTTTCAGTAACCTCCCAACTGTTTTCGCTGCCAAAGGGGAACCCTTCAGATTTTTTTGATATCATTTTTCCAGTCTCAAGTAAATTAGCATGATCATTTGCTGATTTCTCATCACCAAACACAGATGCTTTGAATAATTCCCAAAACTCTTGAGGATCAAGCCCTTTTAGTTGTATTGGACTATCAATTGTTTTAACCATTTCTACCACTGCTAGAAAATGAGTGGTGACTAGAATTATGTTTCCCTTGGTTTGTCCTTTTTTGAGAGATGCTAATAGATATTTCCATTCATCCTCGTGGCCACAATTCCACATATCATCCAAGACAAGTAAAAACTTTGATCCCAAGCTTTGCACAATCAAATCATGCGGACCACTGTTTTTCTCATCTTTGAGTTGAGGGATCGACTTGGCAATGTCTTCTTTCAATCTATACACATTGAAATTGGGAGTTACACAAACCCAGACGGTAACATCAAAGTAGTTATGTACTTCTTTGTATATATACTGTGCGAGAGTTGTCTTCCCTATCCCCCCTGGACCAACAATTGGAATGATGGTCAGGTCCTTGTCACAGTAATCACCATGAGTAATGTTTTTAATAGTTGTATTTTTTTTCATCCATTCTCCCATAAACTGTAGGATCTGTAAACTCTGAAGTGGTCATAGGCCGACTGATAGCAAAACCGCTTGGAAGAACAGGTGCATGCCCTGGTTTCTTGGAAAACTCGGCATTGAGACTCATGGCAATGTACTGGCCAATGCTGCGATTTGATTCCAACAACTCTAGATTGAGTATGGTAGAGACTTTGGCACACAATGGCTTCAGCTGTTCGACAATGCGCTTCATTCTTTGGGACAGATCCACCCTATCGAACTTCAGCTTTGGTGTTTTCATCGTATCCTCCCTCTGCAATACCCTGCCGCAGGAACAGGTGCAGCGGAGGAACTGGCTTCCTGCATGTGCACATGACGCTAGAGTTAGAAAACTTGTACAGTACAATATCCTAGCAGTATATAGAAGGGCATGTTAGGAATTTGGTAGAAAATTAGAGATGGATTTTACAGCAATTTATAGTTTATATTTAATCCAATTGGGAGGAGTATTTAGTACTGGATCTCATCGTGCACTAGGGAAGAACGTTGCTAGAGCGATTTGACGAGCAGCGAGGTGGCTGAGCCCGGCCAAGAGGTTGGCGTTCGCGGCGGTCTGGCAGGCTCGCCGTGCGCTCGTCCTTTTGGCCGAGCCTCACGGCTCATTGCTAGACACGGCGACGAGCTGATGTATATATGGTCAAGAGCAAGGGCTGTTTAGCAGGGTGTGTTCTTTATTTCTTCACTATTTTTTTTTCACGAACGCGCAAAAAGATTGCACGTCAATATATTAGAAGGAAAAGAGTTCTTATTACACAATGCAATCAGCTATATAGGCTTATGCCAAGGGGGGAAGAGAGAAAAAAACAAAACAAAAACTGCAGCTAGGTTTACTATGGCGGCTAAACGCAACTCCGATCAGCGGGAAAGGATAGAGCCACACTACTTATTTCTTCACTATAATCTGGTTGTTTACCCAGAGAGACATATTTGCCTTTTTTTTCAAAAAAAAATGTTTTAAAAAGTTTTACTCATTAAATAGGGAAAAGGAATCAATCTACACCGTTAGGTCGTCATACTGGAAGTATAAATTAGAATTGAATTGTACTCTAGAGTTATCACCACCGTACCGTCATGTTAAGGTGCAAAAGAGAGGCATGGAAAGTGTTTACCGATGTGATGGGTGTTGCCGCGAGCACTGGGAGAGAGCTTGTGCATGCAGCAGTTGCTGGCAACAGCCTCCTCGTCGGCGGCGGCGTGGAGAGTGCGCGACGGCGACGAGCCGATCTGACGGTTCATCACTTGACCACCACCAGCACACGAGGAGCCGATCTGACGGTTCTTGTCTTCTCCCGACCGCCGACCGTCAGCGTCAGGGTGATCATCACCAGCGCACGGGAGGAGCACTAGGTTGCTCGCGACGCTGAGGGCTGTATGGCGAGTGTTGAGGAAGAGGTTGTGGACGACGCAGCCCTTGGCGTGCTCGTCGGCGGCCTCGCAGGTGCCGTCGAGCTCGTCCTGGATGCGGAAGTAGTCGAGCTCGTCGAGCACGTCCTCGGCGTCGACGCGTCGTGGGCGAGGCCACGCAGCTCCAGGAGCAGCTGCCTCAGCGCGGGGCTGCGGGCCTCCCTGCCGCCGGTGCCACGGGCGTTGTCGAGCATCCCCTGCGCGTACAGCAGCTCCATCTTGACGGCGCCGACGTTGGGGCCGAGCTCCTTGCTGGCCACCCACGCCTCCACGAACCCTCCGGACAGCGGGCTCAGCGCCTTGCTGACCACCCGCCGCGCCGCGTTCACGGCCACCGACTCCATCGCTCGATCTCCCCCCCGGCGCCGGCGATTGAGCGGCCGGAGAGCGCAGAATGTCACTGCTTCGATCGTCCACGATCCCCGGCTGCCACCAATCTCCAAGAATGTGCAG
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| CDS seq | ATGGGAGAATGGATGAAAAAAAATACAACTATTAAAAACATTACTCATGGTGATTACTGTGACAAGGACCTGACCATCATTCCAATTGTTGGTCCAGGGGGGATAGGGAAGACAACTCTCGCACAGTATATATACAAAGAAGTACATAACTACTTTGATGTTACCGTCTGGGTTTGTGTAACTCCCAATTTCAATGTGTATAGATTGAAAGAAGACATTGCCAAGTCGATCCCTCAACTCAAAGATGAGAAAAACAGTGGTCCGCATGATTTGATTGTGCAAAGCTTGGGATCAAAGTTTTTACTTGTCTTGGATGATATGTGGAATTGTGGCCACGAGGATGAATGGAAATATCTATTAGCATCTCTCAAAAAAGGACAAACCAAGGGAAACATAATTCTAGTCACCACTCATTTTCTAGCAGTGGTAGAAATGGTTAAAACAATTGATAGTCCAATACAACTAAAAGGGCTTGATCCTCAAGAGTTTTGGGAATTATTCAAAGCATCTGTGTTTGGTGATGAGAAATCAGCAAATGATCATGCTAATTTACTTGAGACTGGAAAAATGATATCAAAAAAATCTGAAGGGTTCCCCTTTGGCAGCGAAAACAGTTGGGAGGTTACTGAAAAATCACCTTGA
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| Protein seq | MGEWMKKNTTIKNITHGDYCDKDLTIIPIVGPGGIGKTTLAQYIYKEVHNYFDVTVWVCVTPNFNVYRLKEDIAKSIPQLKDEKNSGPHDLIVQSLGSKFLLVLDDMWNCGHEDEWKYLLASLKKGQTKGNIILVTTHFLAVVEMVKTIDSPIQLKGLDPQEFWELFKASVFGDEKSANDHANLLETGKMISKKSEGFPFGSENSWEVTEKSP |
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| Function | Disease resistance protein RGA2 [UniProtKB/Swiss-Prot:Q7XBQ9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0594200 | OsNip_06t0594200-01 | Chr06 | 23357768 | 23360733 | - | RAP2018-11-26 | ||
| CDS seq | ATGGGAGAATGGATGAAAAAAAATACAACTATTAAAAACATTACTCATGGTGATTACTGTGACAAGGACCTGACCATCATTCCAATTGTTGGTCCAGGGGGGATAGGGAAGACAACTCTCGCACAGTATATATACAAAGAAGTACATAACTACTTTGATGTTACCGTCTGGGTTTGTGTAACTCCCAATTTCAATGTGTATAGATTGAAAGAAGACATTGCCAAGTCGATCCCTCAACTCAAAGATGAGAAAAACAGTGGTCCGCATGATTTGATTGTGCAAAGCTTGGGATCAAAGTTTTTACTTGTCTTGGATGATATGTGGAATTGTGGCCACGAGGATGAATGGAAATATCTATTAGCATCTCTCAAAAAAGGACAAACCAAGGGAAACATAATTCTAGTCACCACTCATTTTCTAGCAGTGGTAGAAATGGTTAAAACAATTGATAGTCCAATACAACTAAAAGGGCTTGATCCTCAAGAGTTTTGGGAATTATTCAAAGCATCTGTGTTTGGTGATGAGAAATCAGCAAATGATCATGCTAATTTACTTGAGACTGGAAAAATGATATCAAAAAAATCTGAAGGGTTCCCCTTTGGCAGCGAAAACAGTTGGGAGGTTACTGAAAAATCACCTTGA
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| Protein seq | MGEWMKKNTTIKNITHGDYCDKDLTIIPIVGPGGIGKTTLAQYIYKEVHNYFDVTVWVCVTPNFNVYRLKEDIAKSIPQLKDEKNSGPHDLIVQSLGSKFLLVLDDMWNCGHEDEWKYLLASLKKGQTKGNIILVTTHFLAVVEMVKTIDSPIQLKGLDPQEFWELFKASVFGDEKSANDHANLLETGKMISKKSEGFPFGSENSWEVTEKSP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g49380 | SBH | 0.054588 | 0.153253 | 0.421167 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0594200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0021260 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0021090 | RBH | 0.000000 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0021200 | RBH | 0.0 | 0.0 | 0.187749 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0020930 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0021350 | RBH | 0.331698 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0370000 | RBH | 0.2327645 | 0 | 0.0493785 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0020790 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0349200 | RBH | 0.2610035 | 0 | 0.047404 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0021200 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0021210 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0020840 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0021520 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0021070 | RBH | 0.026027 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G020920 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0028410 | SBH | 0.128584 | 0.0 | 0.264067 |
