Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g0586300 | OGI:06064300 | 11/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:22967816-22971851 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGACAATGAACCATGTACATATTATATTTTGGCAGCCTTCCTGCTGTGCTTTATTGTACAAGACTGTTGTCTACAATTGCACAAACCCTAGCAGAAACCGGGCTAATGCCTGGGATTTATTCACTGGTCACAGTATCCGGAGTATCTGAAAACAACATTACAATCTATCCTGCGGTACACGTAGATGTAACGCAGTATCCAGTAGGTAGGTAACTGCTCTAGCAGTTAGCAATGCTTGCAGCTTGACGACGACTCGACAATCTTCTGGTAATGGAGGACGGTTCTCCCAGCACGTCCCTGTAGTCTCTCAGGGATGATTCTTCAGATACTCAGGAAGCCGGTGTGTAGGGAAGTAACGACCCTCGTCACTCGGATCCATCGGCGGATCTGCAGCACATCACCGTTAAGTGCCAAACCAATATTAATCATATCACAAATCAATAACAAAAACACCAAGAGAATAATGAATATGTGTATACAGAGAGAAAATATGGAAGCAATTTGTGTGGGGCAGTAGCTTAGCTTTACCTGGAGCGGCTGCTGGAGACTTTGCAGCAGGAGGATTGACGACCGGAGCAGCTGGAAGGTTGCCGCCTGGAACGGCCACCGGTGCAGCTGGAGGATCGCCGGCTGAAGCGGACGCCGGGAAAGCGGAGGCGGCGGAGCTGTCGGCGAATGCCATTCGTTGTAGCTAGTCCGGCAAGGCACAAGGCTGTTCAGTTCAGCTACCCAATGTCTCCAGAATATATAGCCATTGTAAAGGTTATTTCTTTGTTGGCTAGACAGATAGATCATCAGAGATCCATTATATTCCCTGGGAACTCAAGAAGAATCACATCTATCGATATTTCTCTTCAGGAATAAGGTGTGCGTTCACATGGCACCAGTATTCGAGAATCATAGCTAGTCGGGGTTAGTTTTTCTTTAGGACTAGGAGGCTAGCAGATGTAGGAAGGTAAGTGGCAACCTGAAGAGTCAAAAATCTTGGGCATCAGCTTGTAGTTTCAGAATAACTAAATGGGGGATTGTGTGAGTGCCAAAAGGCCTACCAAGAACGACCAGTCTAGTAATTCCATTGCATGCCACATTTCACTTTCCAGTTTTCTAGACCCTTTCCAAGCAACTCAATTACAAGGTGCTTTGCTGACAGTGTTGGATAGAGGTTTTCTGTTTTGAACAAACACCAGGTAGCAAATCTGGTTGTGCATCTTCCTTGTTCCTTGCCACTATATCTTGGACTACCAACAAAACATTTGATCAGCCATTTGCGGAGAAGGTCTCTTGTTGATAGTTGGAATTAACAGCAATGGCCTCTTCGAGTGTCCTGTCTCCAAACATCGCATGGGTTCTTTGTCACTTCATCTTTTGCAGCATATCGTTAGCCATCTGCAATGAAACTGACGATAGACAGGCTCTCCTTTGCTTCAAGTCTCAGCTCTCTGGTCCATCTAGAGTTCTATCCTCATGGAGCAACACATCCTTGAATTTCTGCAACTGGGATGGAGTCACCTGCAGCTCACGAAGTCCTCCCCGGGTCATTGCAATAGATCTCTCATCAGAAGGCATCACGGGCACCATATCACCTTGCATTGCCAACCTGACCTCTCTTATGACACTTCAACTGTCAAACAACAGCCTCCATGGCAGCATACCACCCAAGCTTGGCCTCCTGAGAAAACTCAGGAACCTCAACCTCAGCATGAACTCTTTAGAAGGTAACATTCCATCTCAACTTTCTTCATATTCCCAAATTGAAATCCTAGATTTGTCAAGCAATTCCTTCCAAGGTGCAATCCCAGCTAGCCTAGGCAAATGCATACATCTTCAGGATATTAATCTCAGCAGAAACAATTTGCAAGGTAGAATCTCCTCTGCTTTTGGGAATCTTTCTAAGCTGCAAGCACTGGTCCTCACTAGCAACAGGCTCACAGATGAAATACCACCATCTCTAGGCAGCAGCTTTTCTCTCAGATATGTTGATCTTGGGAATAATGATATCACAGGAAGCATACCAGAGTCCTTGGCAAACAGCTCATCTCTCCAAGTACTTAGGCTCATGAGCAATAATCTTAGTGGAGAAGTCCCAAAGTCTCTATTCAATACTTCATCACTTACCGCCATTTTCCTACAACAAAACAGCTTTGTTGGTTCTATACCCGCTATTGCGGCCATGTCCTCCCCCATTAAATATATTTCCTTAAGGGACAATTGCATCTCAGGAACAATACCGCCCTCACTAGGTAACCTTTCTTCCCTACTTGAACTTCGCCTTTCTAAGAACAATTTAGTTGGTAGCATTCCAGAGAGCTTAGGTCATATCCGAACACTAGAGATACTGACCATGAGTGTGAACAACTTGTCTGGTCTAGTTCCACCATCTCTCTTCAACATTTCATCCCTGACATTTCTTGCTATGGGAAACAACTCGCTCGTGGGAAGATTACCCTCTGATATTGGCTACACACTTACAAAAATTCAGGGCTTGATCCTCCCGGCAAACAAGTTTGTTGGCCCAATTCCAGCTTCACTTCTCAATGCCTACCACCTAGAGATGCTCTACCTAGGTAATAACAGTTTCACTGGACTCGTGCCATTCTTTGGATCATTACCGAATTTGGAAGAACTTGATGTGTCATACAACATGCTAGAACCGGGCGATTGGAGCTTTATGACATCACTCTCGAATTGCTCTAAATTGACTCAACTGATGTTAGATGGGAACAGCTTCCAAGGAATTTTGCCAAGTTCAATCGGCAATCTTTCTAGCAATCTTGAGGGATTATGGCTAAGAAATAACAAAATCTATGGACCGATACCGCCAGAAATAGGTAATCTAAAGAGTCTCAGTATATTGTTTATGGATTACAATCTTTTCACTGGTACTATACCACAAACAATTGGAAATCTGAACAACTTAACTGTTCTATCATTTGCACAAAATAAGCTCTCAGGCCATATCCCTGACGTTTTTGGCAACCTAGTTCAGTTGACAGATATAAAATTGGATGGGAACAACTTCAGTGGAAGAATACCTTCAAGTATAGGGCAATGTACTCAACTCCAGATACTCAACCTTGCTCACAACTCATTAGATGGGAATATACCAAGTATAATATTCAAAATTACTTCGCTTTCTCAAGAGATGAACTTGTCACACAATTACTTGACTGGAGGAATGCCAGACGAAGTTGGAAATCTCATTAATTTGAACAAACTTGGAATCTCAAACAACATGTTGTCTGGAGAGATCCCATCCTCCCTTGGCCAGTGTGTGACTCTGGAGTATCTTGAGATACAAAGCAACTTCTTTGTAGGAGGTATTCCGCAATCTTTTATGAAATTAGTAAGTATAAAAGAGATGGATATATCTCGGAATAATTTGTCTGGGAAAATCCCACAGTTCCTCAACTTGCTGAGTTCCCTACATGACCTCAATTTATCCTTCAACAATTTTGATGGAGTCATTCCAACGGGTGGCGTTTTCGACATTGACAATGCAGTATCAATTGAAGGAAATAATCATTTGTGTACAAGCGTTCCAAAAGTTGGTATTCCTTCTTGTTCTGTTTTGGCTGAGAGGAAAAGGAAACTCAAGATCTTGGTTCTAGTCCTAGAGATACTGATACCAGCTATCATTGCTGTTATAATCATTCTATCCTATGTTGTGAGAATTTATGGAATGAAGGAGATGCAAGCAAACCCACATTGCCAACAAATTAATGACCATGTGAAAAACATAACATATCAAGACATTGTAAAGGCTACAGATAGGTTCAGTTCTGCCAATTTAATTGGCACAGGATCGTTTGGGACGGTTTACAAAGGTAATCTAGACCGTCAGCAAGATGAGGTTGCCATCAAAGTATTTAACCTTGGAATTTATGGGGGCCAAAGGAGCTTTAGTGTGGAGTGTGAAGCTCTAAGAAACATTCGCCATCGAAATCTTGTAAAAATCATCACTCTGTGCTCTTCAGTGGATTCCAATGGGGCAGACTTCAAAGCCCTTGTGTTCCAATATATGGCCAACGGGAACTTG
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| CDS seq | ATGCTACCAACTAAATTGTTCTTAGAAAGGCGAAGTTCAAGTAGGGAAGAAAGGTTACCTAGTGAGGGCGGTATTGTTCCTGAGATGCAATTGTCCCTTAAGGAAATATATTTAATGGGGGAGGACATGGCCGCAATAGCGGGTATAGAACCAACAAAGCTGTTTTGTTGTAGGAAAATGGCGGTAAGTGATGAAGTATTGAATAGAGACTTTGGGACTTCTCCACTAAGATTATTGCTCATGAGCCTAAGTACTTGGAGAGATGAGCTGTTTGCCAAGGACTCTGGTATGCTTCCTGTGATATCATTATTCCCAAGATCAACATATCTGAGAGAAAAGCTGCTGCCTAGAGATGGTGGTATTTCATCTGTGAGCCTGTTGCTAGTGAGGACCAGTGCTTGCAGCTTAGAAAGATTCCCAAAAGCAGAGGAGATTCTACCTTGCAAATTGTTTCTGCTGAGATTAATATCCTGA
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| Protein seq | MLPTKLFLERRSSSREERLPSEGGIVPEMQLSLKEIYLMGEDMAAIAGIEPTKLFCCRKMAVSDEVLNRDFGTSPLRLLLMSLSTWRDELFAKDSGMLPVISLFPRSTYLREKLLPRDGGISSVSLLLVRTSACSLERFPKAEEILPCKLFLLRLIS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0586300 | OsNip_06t0586300-01 | Chr06 | 22967816 | 22971851 | - | RAP2018-11-26 | ||
| CDS seq | ATGCTACCAACTAAATTGTTCTTAGAAAGGCGAAGTTCAAGTAGGGAAGAAAGGTTACCTAGTGAGGGCGGTATTGTTCCTGAGATGCAATTGTCCCTTAAGGAAATATATTTAATGGGGGAGGACATGGCCGCAATAGCGGGTATAGAACCAACAAAGCTGTTTTGTTGTAGGAAAATGGCGGTAAGTGATGAAGTATTGAATAGAGACTTTGGGACTTCTCCACTAAGATTATTGCTCATGAGCCTAAGTACTTGGAGAGATGAGCTGTTTGCCAAGGACTCTGGTATGCTTCCTGTGATATCATTATTCCCAAGATCAACATATCTGAGAGAAAAGCTGCTGCCTAGAGATGGTGGTATTTCATCTGTGAGCCTGTTGCTAGTGAGGACCAGTGCTTGCAGCTTAGAAAGATTCCCAAAAGCAGAGGAGATTCTACCTTGCAAATTGTTTCTGCTGAGATTAATATCCTGA
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| Protein seq | MLPTKLFLERRSSSREERLPSEGGIVPEMQLSLKEIYLMGEDMAAIAGIEPTKLFCCRKMAVSDEVLNRDFGTSPLRLLLMSLSTWRDELFAKDSGMLPVISLFPRSTYLREKLLPRDGGISSVSLLLVRTSACSLERFPKAEEILPCKLFLLRLIS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.594534 | 0.964006 | 0.765497 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0210600 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g38680 | RBH | 0.402055 | 0.648375 | 0.197054 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0586300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0020530 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0020690 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0020860 | SBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0020450 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0021130 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0020610 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G020470 | SBH | 0.000000 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0020800 | SBH | 0.000000 | 0.000000 | 0.000000 |
