Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g0586000 | OGI:06065020 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:22956669-22957307 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGAGAGGTATACTTTGGCACCAACTGGCTGCACTTTATTGATACAAGACAATTGTCTACAATTGCACAGCCTGATCTGCATTATCCCTAGCAGTAACTAGCCTAACGCCAGTGGGGATTTATTCCCTGATCATAGTGTCTGAAATTATCTGAAACAACATCACAATCTCACGGTGCACAGTACACGTAAGGCAGTTCCGGACATTCGATGTAGGAGAACGGTTTTAACACGTCCCTGTGCCCAGTGTATTTAATCTTTACCCCCGGGAAGTGGATGCCCAGAACCCATACGCTCCTCTTTGCTAGGATCGATCACCGGAACTGCATCACATAAGCATGTAGTGGTGAACTACTGACTAGCAGAAATCAATAACAAAAATAGACCAAGAGCAGCAATACACATGTACTCCATATATTTGCAGAAAATGTAGAAACAGTTTTGTATGGGGTGTTGTTAGATACCAGCTGGAGAGGCTTCTTGAGACTTGGCGGCCGGAGCAGCTGGAAGATCACTGCCTGGAACGGGCACCGGCGTCGCAGACGGAGGATCACCGGATGAATAGGCCACCGGAATGGGGGAGGCGGCGGAGCTGTCAGCCATTCTCCCGATCTAGGTAGGCCGGTGGAAACTGGAGAGCAT
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| CDS seq | ATGGCTGACAGCTCCGCCGCCTCCCCCATTCCGGTGGCCTATTCATCCGGTGATCCTCCGTCTGCGACGCCGGTGCCCGTTCCAGGCAGTGATCTTCCAGCTGCTCCGGCCGCCAAGTCTCAAGAAGCCTCTCCAGCTGTTCCGGTGATCGATCCTAGCAAAGAGGAGCGTATGGGTTCTGGGCATCCACTTCCCGGGGGTAAAGATTAA |
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| Protein seq | MADSSAASPIPVAYSSGDPPSATPVPVPGSDLPAAPAAKSQEASPAVPVIDPSKEERMGSGHPLPGGKD |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0586000 | OsNip_06t0586000-01 | Chr06 | 22956669 | 22957307 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCTGACAGCTCCGCCGCCTCCCCCATTCCGGTGGCCTATTCATCCGGTGATCCTCCGTCTGCGACGCCGGTGCCCGTTCCAGGCAGTGATCTTCCAGCTGCTCCGGCCGCCAAGTCTCAAGAAGCCTCTCCAGCTGTTCCGGTGATCGATCCTAGCAAAGAGGAGCGTATGGGTTCTGGGCATCCACTTCCCGGGGGTAAAGATTAA
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| Protein seq | MADSSAASPIPVAYSSGDPPSATPVPVPGSDLPAAPAAKSQEASPAVPVIDPSKEERMGSGHPLPGGKD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 6.089145 | 10.268332 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g38660 | RBH | 4.007699 | 6.698921 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0586000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0020790 | RBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0020581 | RBH | 0.000000 | 0.000000 | 0.779417 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0020740 | RBH | 0.000000 | 0.000000 | 1.329514 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0020520 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0364800 | RBH | 1.419306 | 4.3123905 | 2.888234 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0339900 | RBH | 1.792536 | 27.111001 | 0.4922055 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0020760 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0020590 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G020480 | RBH | 0.280472 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
