Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g0540050 | OGI:06056100 | 3/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:20280677-20281207 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTACACCGGTGGCAGCGCCTCCGTCGGCGACGACTCACCCGCCGCCGGCGCAGGTCGGCCGCCGTCGTCCCCCGGCGGCGGCTCGACCTCCGTCCGGCAGAGCGGGCACGTGGCGTGCGAGGCCAGCCACATGTCGATGCACTCCACGTGGTACAGGTGCTTGCACGCCGGCAGCCGCCGCACCATCTCGCCGCCCCGCACCGCTCCGAGGCACACCGAGCACTGCGCCGCCCCCTCGCCGCCGCTCGCCGACCCGGTGTACGCGAACTCCGGGATCTTGGCCGCCACGCCAGCGACGCTGCGCACGTCGTCGTCCTCTCGCCCGCCGCCGCCGGCGACGACGACATGCGCGCGCCTCCGGACGTGGCGGTTGCAGTAGAAGACGACGACGGCGACGAGCGCGACGCCCGTGACGAGGCCAGCGCAGGTGTAGCTGAAGATCGCCGGCCCTTTGACCACCGGCGGCCGGTTCTCATCCGGCGCCACTGGCGGCGTACTCGTCGTCGTCGACGAGCCGGAACGCGAACCCAT
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| CDS seq | ATGGGTTCGCGTTCCGGCTCGTCGACGACGACGAGTACGCCGCCAGTGGCGCCGGATGAGAACCGGCCGCCGGTGGTCAAAGGGCCGGCGATCTTCAGCTACACCTGCGCTGGCCTCGTCACGGGCGTCGCGCTCGTCGCCGTCGTCGTCTTCTACTGCAACCGCCACGTCCGGAGGCGCGCGCATGTCGTCGTCGCCGGCGGCGGCGGGCGAGAGGACGACGACGTGCGCAGCGTCGCTGGCGTGGCGGCCAAGATCCCGGAGTTCGCGTACACCGGGTCGGCGAGCGGCGGCGAGGGGGCGGCGCAGTGCTCGGTGTGCCTCGGAGCGGTGCGGGGCGGCGAGATGGTGCGGCGGCTGCCGGCGTGCAAGCACCTGTACCACGTGGAGTGCATCGACATGTGGCTGGCCTCGCACGCCACGTGCCCGCTCTGCCGGACGGAGGTCGAGCCGCCGCCGGGGGACGACGGCGGCCGACCTGCGCCGGCGGCGGGTGAGTCGTCGCCGACGGAGGCGCTGCCACCGGTGTAG
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| Protein seq | MGSRSGSSTTTSTPPVAPDENRPPVVKGPAIFSYTCAGLVTGVALVAVVVFYCNRHVRRRAHVVVAGGGGREDDDVRSVAGVAAKIPEFAYTGSASGGEGAAQCSVCLGAVRGGEMVRRLPACKHLYHVECIDMWLASHATCPLCRTEVEPPPGDDGGRPAPAAGESSPTEALPPV |
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| Function | RING-H2 finger protein ATL32 [UniProtKB/Swiss-Prot:Q8W571] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0540050 | OsNip_06t0540050-00 | Chr06 | 20280677 | 20281207 | - | RAP2018-11-26 | ||
| CDS seq | ATGGGTTCGCGTTCCGGCTCGTCGACGACGACGAGTACGCCGCCAGTGGCGCCGGATGAGAACCGGCCGCCGGTGGTCAAAGGGCCGGCGATCTTCAGCTACACCTGCGCTGGCCTCGTCACGGGCGTCGCGCTCGTCGCCGTCGTCGTCTTCTACTGCAACCGCCACGTCCGGAGGCGCGCGCATGTCGTCGTCGCCGGCGGCGGCGGGCGAGAGGACGACGACGTGCGCAGCGTCGCTGGCGTGGCGGCCAAGATCCCGGAGTTCGCGTACACCGGGTCGGCGAGCGGCGGCGAGGGGGCGGCGCAGTGCTCGGTGTGCCTCGGAGCGGTGCGGGGCGGCGAGATGGTGCGGCGGCTGCCGGCGTGCAAGCACCTGTACCACGTGGAGTGCATCGACATGTGGCTGGCCTCGCACGCCACGTGCCCGCTCTGCCGGACGGAGGTCGAGCCGCCGCCGGGGGACGACGGCGGCCGACCTGCGCCGGCGGCGGGTGAGTCGTCGCCGACGGAGGCGCTGCCACCGGTGTAG
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| Protein seq | MGSRSGSSTTTSTPPVAPDENRPPVVKGPAIFSYTCAGLVTGVALVAVVVFYCNRHVRRRAHVVVAGGGGREDDDVRSVAGVAAKIPEFAYTGSASGGEGAAQCSVCLGAVRGGEMVRRLPACKHLYHVECIDMWLASHATCPLCRTEVEPPPGDDGGRPAPAAGESSPTEALPPV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0537300 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g34870 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0540050 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0018680 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0018500 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0018490 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0018310 | SBH | 0.0 | 0.047675 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0018690 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0318400 | RBH | 0 | 0.4136395 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0018180 | SBH | 0.0 | 0.177104 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0293700 | RBH | 0 | 2.789736 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0018600 | SBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0018540 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0018190 | SBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0018940 | RBH | 0.0 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0018400 | SBH | 0.0 | 0.510367 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G018270 | SBH | 0.0 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0018420 | SBH | 0.0 | 1.384432 | 0.288253 |
