Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g0295000 | OGI:06028900 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:10871810-10875144 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTTATCTAAAGATATGGATATAATTATTGGCAAAGATAGACATAGAGGAAATTAGGAGAACACAAGCATAGAAAAAGTAGAAAAACAGAGAAATTATAAACCTAGTAGTACATTAGTACATCATTTGTTTGATAGTACAACTAGTATGTAGAATTACTGGGCTGAAAATGCATCTCACTGAACAACATTGATGGATGGATGGAGTCCCACACAGACCCCACGCGCCTGATGCAAACCATTACCAAGTACTTGAGACTCAGGATCCTCAGAAGCAACACGATGGTTGGCAACCTGGCTCAACTTCGATAGCATAGCATGGATTGAAATGTAGCCTAGAACAAATATTGCCATCGCGATGACATATCCAGATGTGTCCCAATCCCTACTAGAGCCAGTACCATAGGCTACCAGGAGTCCAATCATGTCGAGAACAACTGTCGTGTTCATTGCCTTCAACAACCACTCATTGACATTCAGTTTTAGCGACTCTGGCAACAACAAGATGATAACAATGATAGACGCCATGAAGGAAATGGAGTTACTGTAGAAGAAGGCGTGATACCGTAGCTTTTGCTTGTCATGCAAGACTGGGTCACCCGCAGCATGCCCAGCATCATCATTGCTCTGCCACACGCCACCCGGTGGGTGCAAGCCGGCCTGGTAGGTGACACTCGCTGCTAGAATCCCCAGTAGCATCAAGTTCTTGCGCTTGGTGTACTGTTTACGCTTGATGTCATTCGTATTAGGTACTTCCGCTTCATTTGTTCTCCTGTTCTGCGTGCCCTGAGATTTCTGGTGCACCACGAATGCTACAAGAAGTAAGACCAGAAAAATGAATAGCAAAACGAAGATATATATGGATGTCCGCATATGTTGTGAGCTTCCGGCAGCATAGGCACCCATGAGACCAAACATGCCAGCCACCATGCAAACAGAGAGCGCATAGCTATGAATGGCTGGCCTATACAAATTTGGATTGACCAAGAGTATGATAAGGGCGATGGATGACATGAAGCTTGTTGTGTTGCAGTAGAAGAAGGCTTTGTAACGGCGTGGGTGGTTGCTAAAGAGGACTGGGTGACCTGCATGATAACCATGTTGTTTATCATCATCTTGCCAGCAGCCGCTTGGCGGGGTTAGCCCAGCTTGATAGGTGATGGTTGCACATAAGATCGCAAAAAGGAGCAACCTCTTGCGCCTCTTTTCCAGCAGTGCATTGTCTTCACCTAGCATACTGCCATCATTGTGATCTAGTGTGAAGAACACGATATGGATCACCACATACACCAGCACTGCACCAGCTATGGCCATGACATTTATGGAGGTGCTTGCATCCCGGCAGCTACCAGCTGCATATGCACCCATGAGCCCAAATAAGTCTAAAATCATGGCTGCCTCCAGTGCATGGCGCTTAAGCAGAGACTTGCTCTGCACCAGGATGATGGCGAGTAAGGATGCCACGAAGGCAGTTGAGTTGAAATAGAAAAATGTCTTATACCGCTTAGCATTAATTGTTAGGAGAATTGGGTCACCAGCCTTGTGGCCATCCTTGTCAACCTGCCAATAACCACCCGGCGGGTCAAGCACTGCTTGGTAAGTTATGGTTGCTGCCAGAGTGGCGAGCAATAGAACAAGAGAGCGAGCCTTCTCTAGAGCTTGGTTCAGTAGCTTCTCCCTAGTAATTGAAACCAAAGAAAAGTAAATGGATGATTGTCTAATAACAAAACATAAAATTAAATGTGTGAGTAAGCTTTTTTACATGTTTTGGGAAGGTAGGGAAAGGTACCGTCGTTTACGAGTATGCCTAGGAAACACTATACCATTCCTTTAACGGAATATTATACGTTGACGTCAGTATGATACAGTATGTAATAGACCTGATAGCTATGATATCAGACTTGATATAACCTGGTACTAATGTTATACGGTACAAAATACCTAATACCATACACAATACATGTAGGTACCAGTGTATTACGTATGTCAATATAGATTTACCATCCAACACTATTGATACGGTAGCACTAAGGAGGGAGGTATTAGGAAAGGTCATCATGGATTAACATTAAAAATGATCGTACGTACTTTTTCAAGAACAGTAGATCAAATAAACACTAAATAATTTTGTTTCACACTGAGACTTAAAGAGAATTATCAAACTCTAAGATCTGTAAAATGAAATATTCTCGTGAGACGACGACATATACCTGTCATCATTAGCCTGGGCTAATTCTCGGGCCGGTTGCCTGAGATGATATCGCCGTTCTTTCACCGAAGAATACATCCCAGCAAGCTTCTCCGACATGCCGGTGTTGCTAAGTGCGCGCGCGGCGCACGCGACGACGGCCAGATGGATGGCAATGTAGGCGAGGACAGCGCCGATCAGAGCTACTACGTAGGCGGTGGTGTGCGCCGCCCTGGAGCTCCCGGCGGCGTAGGCTCCGACGAGCCCCGCCAGCGAGACGAGGACGCACCCGTACAGCTCCCAGGCGCGCACCGTGCCGTCGCGCAGCTTCCGGTCGAGGAGCAGCACGATGACGAGCAGCGACGCGACGAACGCGGTGGTGTTGCAGAGGAGGAACACCGTCAGCCTCGCCGGGTGCCTGTCGCCCATGACCGCGTCGCCGGCGCGGTGGCCGGCGGCGGCGTCCGAGTCCGACCAGAAGCCTCCCGGCGTGCTCAGGCCGGCGACGTACGTGAGGCTCGTGGCGAACGTGGCGAGCAGCAGGAGCACCTTGCGCGACTTCTCCTTCACGACGTGCTCGTCGCCGTCGTGCTCGCCGGCGGGCAGCGAGGCGAGCACCACCTGCAGCGCGACGTAGACGACGACGAGGGAGACGAGCACGACGGTGAACGTGGTGGTGGTCCTGTCCCGGCACGTCCCCGCGGCGTAGGCGCCCATGAGGCTGACGAGGTCGAGCACCATGACCGCGCGCAGCGGCATCACGGTGACCCGCACGTTCCGCTTCTCGTGGAGCACGGCGAAGAGGAGGATGAGGACGATGACGACGAGCGACGACACGAACGCGGTGGCGTTGCAGTAGAAGTAGAGGAGGTAGCGGCCGTTGTAGTGGTCCCTGATGACGGGGTCGCCGGCGAGGTGGACGCCGTCCTTCGCGTCCGACCACACGCCGCCCGGCGGGCTGAACCCGGCGCCGTACGCCACCGTCGCCACCAGCGTGGCCAGCAGCAGGAGGTACTTCCGCAGCGTGTACTCCCATGGCTGCTCCTCCGCAACATTCCCGGGCGGCGGCGGCGGCGGCGGCGGCGGCATTGGCGAAATCTTAGTGAACTCAAGAGGAAAGATTGATATGGCTTGTACACTTGTACACTTT
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| CDS seq | ATGCCGCCGCCGCCGCCGCCGCCGCCGCCCGGGAATGTTGCGGAGGAGCAGCCATGGGAGTACACGCTGCGGAAGTACCTCCTGCTGCTGGCCACGCTGGTGGCGACGGTGGCGTACGGCGCCGGGTTCAGCCCGCCGGGCGGCGTGTGGTCGGACGCGAAGGACGGCGTCCACCTCGCCGGCGACCCCGTCATCAGGGACCACTACAACGGCCGCTACCTCCTCTACTTCTACTGCAACGCCACCGCGTTCGTGTCGTCGCTCGTCGTCATCGTCCTCATCCTCCTCTTCGCCGTGCTCCACGAGAAGCGGAACGTGCGGGTCACCGTGATGCCGCTGCGCGCGGTCATGGTGCTCGACCTCGTCAGCCTCATGGGCGCCTACGCCGCGGGGACGTGCCGGGACAGGACCACCACCACGTTCACCGTCGTGCTCGTCTCCCTCGTCGTCGTCTACGTCGCGCTGCAGGTGGTGCTCGCCTCGCTGCCCGCCGGCGAGCACGACGGCGACGAGCACGTCGTGAAGGAGAAGTCGCGCAAGGTGCTCCTGCTGCTCGCCACGTTCGCCACGAGCCTCACGTACGTCGCCGGCCTGAGCACGCCGGGAGGCTTCTGGTCGGACTCGGACGCCGCCGCCGGCCACCGCGCCGGCGACGCGGTCATGGGCGACAGGCACCCGGCGAGGCTGACGGTGTTCCTCCTCTGCAACACCACCGCGTTCGTCGCGTCGCTGCTCGTCATCGTGCTGCTCCTCGACCGGAAGCTGCGCGACGGCACGGTGCGCGCCTGGGAGCTGTACGGGTGCGTCCTCGTCTCGCTGGCGGGGCTCGTCGGAGCCTACGCCGCCGGGAGCTCCAGGGCGGCGCACACCACCGCCTACGTAGTAGCTCTGATCGGCGCTGTCCTCGCCTACATTGCCATCCATCTGGCCGTCGTCGCGTGCGCCGCGCGCGCACTTAGCAACACCGGCATGTCGGAGAAGCTTGCTGGGATGTATTCTTCGGTGAAAGAACGGCGATATCATCTCAGGCAACCGGCCCGAGAATTAGCCCAGGCTAATGATGACAGGGAGAAGCTACTGAACCAAGCTCTAGAGAAGGCTCGCTCTCTTGTTCTATTGCTCGCCACTCTGGCAGCAACCATAACTTACCAAGCAGTGCTTGACCCGCCGGGTGGTTATTGGCAGGTTGACAAGGATGGCCACAAGGCTGGTGACCCAATTCTCCTAACAATTAATGCTAAGCGCTGGTGCAGTGCTGGTGTATGTGGTGATCCATATCGTGTTCTTCACACTAGATCACAATGA
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| Protein seq | MPPPPPPPPPGNVAEEQPWEYTLRKYLLLLATLVATVAYGAGFSPPGGVWSDAKDGVHLAGDPVIRDHYNGRYLLYFYCNATAFVSSLVVIVLILLFAVLHEKRNVRVTVMPLRAVMVLDLVSLMGAYAAGTCRDRTTTTFTVVLVSLVVVYVALQVVLASLPAGEHDGDEHVVKEKSRKVLLLLATFATSLTYVAGLSTPGGFWSDSDAAAGHRAGDAVMGDRHPARLTVFLLCNTTAFVASLLVIVLLLDRKLRDGTVRAWELYGCVLVSLAGLVGAYAAGSSRAAHTTAYVVALIGAVLAYIAIHLAVVACAARALSNTGMSEKLAGMYSSVKERRYHLRQPARELAQANDDREKLLNQALEKARSLVLLLATLAATITYQAVLDPPGGYWQVDKDGHKAGDPILLTINAKRWCSAGVCGDPYRVLHTRSQ |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0295000 | OsNip_06t0295000-01 | Chr06 | 10871810 | 10875144 | - | RAP2018-11-26 | ||
| CDS seq | ATGCCGCCGCCGCCGCCGCCGCCGCCGCCCGGGAATGTTGCGGAGGAGCAGCCATGGGAGTACACGCTGCGGAAGTACCTCCTGCTGCTGGCCACGCTGGTGGCGACGGTGGCGTACGGCGCCGGGTTCAGCCCGCCGGGCGGCGTGTGGTCGGACGCGAAGGACGGCGTCCACCTCGCCGGCGACCCCGTCATCAGGGACCACTACAACGGCCGCTACCTCCTCTACTTCTACTGCAACGCCACCGCGTTCGTGTCGTCGCTCGTCGTCATCGTCCTCATCCTCCTCTTCGCCGTGCTCCACGAGAAGCGGAACGTGCGGGTCACCGTGATGCCGCTGCGCGCGGTCATGGTGCTCGACCTCGTCAGCCTCATGGGCGCCTACGCCGCGGGGACGTGCCGGGACAGGACCACCACCACGTTCACCGTCGTGCTCGTCTCCCTCGTCGTCGTCTACGTCGCGCTGCAGGTGGTGCTCGCCTCGCTGCCCGCCGGCGAGCACGACGGCGACGAGCACGTCGTGAAGGAGAAGTCGCGCAAGGTGCTCCTGCTGCTCGCCACGTTCGCCACGAGCCTCACGTACGTCGCCGGCCTGAGCACGCCGGGAGGCTTCTGGTCGGACTCGGACGCCGCCGCCGGCCACCGCGCCGGCGACGCGGTCATGGGCGACAGGCACCCGGCGAGGCTGACGGTGTTCCTCCTCTGCAACACCACCGCGTTCGTCGCGTCGCTGCTCGTCATCGTGCTGCTCCTCGACCGGAAGCTGCGCGACGGCACGGTGCGCGCCTGGGAGCTGTACGGGTGCGTCCTCGTCTCGCTGGCGGGGCTCGTCGGAGCCTACGCCGCCGGGAGCTCCAGGGCGGCGCACACCACCGCCTACGTAGTAGCTCTGATCGGCGCTGTCCTCGCCTACATTGCCATCCATCTGGCCGTCGTCGCGTGCGCCGCGCGCGCACTTAGCAACACCGGCATGTCGGAGAAGCTTGCTGGGATGTATTCTTCGGTGAAAGAACGGCGATATCATCTCAGGCAACCGGCCCGAGAATTAGCCCAGGCTAATGATGACAGGGAGAAGCTACTGAACCAAGCTCTAGAGAAGGCTCGCTCTCTTGTTCTATTGCTCGCCACTCTGGCAGCAACCATAACTTACCAAGCAGTGCTTGACCCGCCGGGTGGTTATTGGCAGGTTGACAAGGATGGCCACAAGGCTGGTGACCCAATTCTCCTAACAATTAATGCTAAGCGCTGGTGCAGTGCTGGTGTATGTGGTGATCCATATCGTGTTCTTCACACTAGATCACAATGA
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| Protein seq | MPPPPPPPPPGNVAEEQPWEYTLRKYLLLLATLVATVAYGAGFSPPGGVWSDAKDGVHLAGDPVIRDHYNGRYLLYFYCNATAFVSSLVVIVLILLFAVLHEKRNVRVTVMPLRAVMVLDLVSLMGAYAAGTCRDRTTTTFTVVLVSLVVVYVALQVVLASLPAGEHDGDEHVVKEKSRKVLLLLATFATSLTYVAGLSTPGGFWSDSDAAAGHRAGDAVMGDRHPARLTVFLLCNTTAFVASLLVIVLLLDRKLRDGTVRAWELYGCVLVSLAGLVGAYAAGSSRAAHTTAYVVALIGAVLAYIAIHLAVVACAARALSNTGMSEKLAGMYSSVKERRYHLRQPARELAQANDDREKLLNQALEKARSLVLLLATLAATITYQAVLDPPGGYWQVDKDGHKAGDPILLTINAKRWCSAGVCGDPYRVLHTRSQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g19110 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0295000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0012120 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0011980 | RBH | 0.0 | 0.410460 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0012030 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0012080 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0012180 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0177900 | SBH | 0 | 0.7170305 | 0.0048605 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0011650 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0172500 | RBH | 5.147779 | 0.1347395 | 0.460024 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0012220 | RBH | 0.029556 | 0.129688 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0012070 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0011830 | RBH | 3.431504 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0012220 | RBH | 0.047769 | 0.339193 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0011960 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G011830 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0012170 | RBH | 0.0 | 0.0 | 0.0 |
