Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g0271500 | OGI:06025340 | 3/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:9130980-9136074 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AAATTAAATTTCTCAGAACTGAGCTAAGCTGAGCATGTATGCCATCTTTCACATGTTGACAAGCACATAGACAGTTCAATGGTAGAAGTATATAGGCATGATGGCCTTTCACATGCTGACAGAATATATAATTCACACAATTTGGACAGGATGTCACAAAAGATCTCAGCTCACAAAGACAATACTTGTCGCACTGACTTAAGTTGACAAACATAAGTTCATAAAATGCCAATAGGGGCATCACATACACATGTCACAACAGGAACTACTCATCATCGCTATCTACCTCAACTGGGGCAACTTCACCTTCACTCCAATATTCCACAGCCGTGTCGTCCTCTATCTCATCACCAGACGATTCACCATCTTCAGCAGGTCGATTTTGCTTCATAAGTCGAGCAACTTCAGAAGCATCAACAACCTGGCGAGCTTCATCATCTCGGTTCAAAGGCAGGTCAGATAAATTCTCATCTACCTCTGGTCTTCTCCCATCTTCCTCAATGCACTGTGTCTGTTGATACGGAGATGCACTAGGTGCATTTTGTTCATCAACATTGTATAAATGCCGATGCTTAAACATTTGGACAAGCTGCCAATTTTCGCCATGCTTATTATCTGGCAGGTAGAAAATCTGTTTAGCTTGAGTCGCTAGTATGAAACAATCTTTCTTGTACCAAAAGCTTCCAGTATTGACGCTTCTAAAAAAACCATCATCTTTTAGTGCAGTCTTCTTGCCATCTAGCTTGTACCATTCACATCTAAAAAGAACCACCGTTCTTGTATTCCCATCATCCTTGCTGTTGTACTGCAACTCAATAATATCTGTCAACTTTCCAAAGTAATCAATTACCCGACCATTATGTATTCCAGCACACGCCACTCCAGAGTTTTGAGTCTTCTTATTTATGTCACGCTCAGCAGTACAGAACCGGACACCATTGACAACACATGAAGAGTAAGATCTTACTCTCAGGTCAGGGCCACATGCTAAGGCAAACAGGTCATCATCTACAATATCTGAATTGTTCAACCTCCACATCTGCAAAAGGGATTGCGGATTAGCAAATCATTAATCAAAACACAACGTATATCGAAAACAAAATGTGAGGCAACTAACATGGTTCCTGAACCAAGTAGCAAATCCAAGCCTAGTCCTTCTATCAATATCAGCTGCTTGCACCCCTGCTTCCTGTAATTCGCCTTGAAACATTCTGTGAACAAACAGATTTCAGCAATTAAATCAAAATGCAAATGTGCAAGAGTACAAGATAGAGAGGTTAGAACATACTTTATATAATCCTGGGCCTGATCGCAATTATATAGGATATACCAAACCATTTGATCAAAATCTTCAGAGTAACCATAGTCACATGCACCAATCAGATTAACACCGTGCCCAAAAACATCAATATTGAAGGCCGATGGATCTGAGAATCCTGGATTTCTCGGTGCTCGGTTAAACCTAGTCTCCACATCCTCCATATACCTAGAGCAGAATGTGAGGGCTTCATCTGCAACATAAGCCTCAGCAATCGAGCCTTCCGGTCGTGCCTTATTCCTAACCGACCTCTTCAAAGTGTACAATCGTCGCTCAACAGGATACATCCACCCAAATTGCACTGGCCCTCGAAGCATTGCCTCGTCAGGCAAATGGACAGCAAGGTGAACCATTACATCAAAAAAAGCGGGTGGAAATAGTTTTTCAAGCTTGCATAGTATAGCTGGTATTTCTGTCTTCATTCGAACCAAGATATCTTTGTTGAGTGTTTGGCTGCACAATTCCCTAAAAAATTTCCCAAGCTCGGCAATCACTAAACATATATCATCATCCAAAATACCTCTCATACCAGCAGGTAATATCCTTTGCAACAGAATGTGGCAGTCATGAGTTTTAAGCCCATGCAAGCTGGTTCCCTCTGCAGTTATGCATCTTTCGATATTTGCAGCATAGCTATCTGGGAACTTTGTTTCTTTCAAAAATTTACAGAATTTAATCTTTTTTTCCCTAGACAATGTGTATCTAGCTTCAGGCATGTGATAATCATCTCCATTTGGCTGCAACTGCAATTCTGGTTTAATATTCAAATCAGCAAGATCAAGCCTTGCATTAACATTGTCTTTTGACTTCCCATGTATGCCAAGAAGGGTACCAAGGAGGTTTTCACAAATATTCTTTTCAATGTGCATCACATCTAGATTGTGTCTAAGCTTCAAAGATGGCCAATATGGTAAATCCCACAAACTAACCCTCCTACCCCAAATTGGCACATGTCCCTCTGAACGCTTCCTTTTTTGACCTGGTCTAACATCATTTACCTTGGCCAATTCTTCTAACAGCTCTTCAGTTGTGAATGTACCTGGCTTCTCTTTGCTTTCATGTAGAGAGGCATATTCATTATTCGTGCGCAGACGATGACGCCTAGGAAGGAACCGACAGTGACCAATATAACAAAGCTTGTTCCTTATGGAATATGATAGAGGATTTTTGTCACAATGGAGACAAGCAAAGAAACCTTGTGTGGTCCGACCAGACAAAGTACTAAGTGCTGGATAGTCATGAATGCACCACAACACGGCAGCACGAAGCTTGAAATCTTTTCCTGTCAGAGCATCAACTGTATCAACACCAGACCAAAGACTAAGTAACTCCTCTATAAGAGGCTGGAGAAAAACATCAAAGTGCTTCTTCCCAGGCGATCTAGGACCAGGAATCAACAAAGCCATCATGAAGTTTGATTCTTGCATACATGACCAAGGTGGAAAGTTGTATGGAATCACAAAAATAGGCCACATACTATAAGATGATCTCATATTGCCAAACGGATTGAAACCGTCTGTAGCCAGGCCAAGCCTAAGGTTCCTTGCATCTTCAGCAAAATCTGGCCAGCATTTGTCAAAATCTTTCCATGCCTCTCCATCTGCAGGATGGGACATTTCCTTCTCTTTGGGTTCCCTATTCAACTTATGCCATTGTGCTTCCTCTGCTGTTTTCTTGGTAGCAAATATTCGTTGAAGCCTAGGTATCAACGGAAAATGCCGCAATACTTTTTCTGGAACCTTCTTATTCACAGGATCTTTCCATCTTGATGCTTGACAAACTGGACAAGTATCAAGTTCTGCATACTCCTTTCTAAATAGCACGCAATTGTTTGGGCAAACATGTATTGACACATAACCCAGTCCTAAAGTACGCAGCATTTTCTTTGCTTCTTCATATGAATTGGGAAGACAATTGTTCTCTGGGAACGCTTTGCGCAAGACTTTCAACTGTGCAGAAAATGCTGAGTTGCTGATCCTGTAGTATGACTTCAAATGGAGCATCTTGACTACAAATGAAAACCTTGAAAATTGAGTGCAACCAGGATATAGCTCATGCTTTGCCTCTTCCATCAGAGTTTTGAAAACAGACTCATGGTTACTAGATGGGTTGCCATCTCCATTTGCTGCATTATTACAAGGTACTTGAGCCCCCATGAGGTCTGTTAAGATATCTTCAACTCTATCTGCAGCATTGTTTTCATGTTCTATAGGATTAGAATGTGGATCCACATCTACTGGTTCCTCCAAAACATGAACATCATTGGCCTCTCCATGATGAATCCATCTTGTATATGTACTAGACATCCCATTGAGCAATATGTGCCTCTCCACATCTCTTTGAGCCATGGATTTCTGGTTAATACACCGACTACATGGACACAAAATTGCAGCATCCCCAGGAAATCGCTCTTCAACAAATTTCATGAAATTTCGAACACCATCAATATAATCTGGTGTGAAAAGTGCACCATGTATCCATCGTCTATCCATCTAGTACAGAAAATTCAGGCACCAGATTGACATCACATTCATGGCTAAACTCCCTATCATACCCTCTAATCGAAGTGGATATCGAAATACATACCAGGCCAATCAGTGGAGCTCTTCAATGGTTGAACTCCAAGGGAAGCCAATGGAGCTCGTCGATAGGCGAGCCACGCCGGAGGCAGGCAGACTGTAGATCTCGACGGCAGAGTACCAGGACAAACCACTGCTACCGCACCCCCCCCCCCCCTCCATCGCTGCTGTACCCAGCCTCCGACGCTGTCGCACCTCGCCTTCGCCGATGCCGCCCCCCGCCTTCGCCGATGCCGCCCCCCGCCTTCGCCGCTTCCACCCCACGCCCCACTTCTTTTCCTTCACTGCTGCCGCACAGTCGCCGGCAGGCCCAGGTTTTCAACTTGGGTATTCGAAATTAAAAGAGATAGAAAAAATTTCATAAAGTCATAGATGGATAGAATTGACCATAAATTGAATGCGTTAAGCATATTAAAGTACAATACTAAACTATTAATTAACAAAACATTTCAAATTTATAGAGCATACAAAATGACAAAATGATAAAAAATTAACAATTTAGAGAAGAACTTTTCGTTTCTTGATATTTTGAAAATGATTGATGATGTCTTTTTCCTACAATACAACAATATAGTATATTCAACCATGAATCATTAATGGATCAAATTCTAAATAAAAAATGTTTAACCATGAACAATATCCTAGAGGCTAGATTCAACTATGAATTAAATCCTAATATCTTATATTCCTATTTCCTAATCCAAAATGTTCCTACTTCCTAATTCCTAACCACATGACATCTAGGTGACTAGACATGAAGGGGAAACTTAGTCATTATTGCTATTTATCTGTGGTAAACTGGTAATGTAGAAGTAGTAAGTTCCTATGGTACTCCATTACTCCAAGACAACTTACCTTCAGCGCGCTGGCGTCCAGTGGCGGTGGCGGGCTGGTGCGGCGCCGTGGCGTGGCATTCTGGCGTCGGCGTGTCGCCGGACTAGGGAGGCGACGAGACGGGATGCCGGGACGACCGGACGGGCGGCGGCACGGCGCGAAATCGCGAGTCAGCGAGTGCACGGCGGGCCGCGCCGCCGCGCGCAAGGGGGCGGGGCGATGGCCGACGGGCGACGGGGCGGGCCGGAGGACGACGGGCGGTCGGGCGCCGGGCGGGCGCAGGGCGACCGCCGACCGGCGACGGCGAGGCGACTGGCGCTGGCGGCCTGACGCGGCGCCGCGGGCTTCCTCTCCCTGGCTGCCT
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| CDS seq | ATGGATAGACGATGGATACATGGTGCACTTTTCACACCAGATTATATTGATGGTGTTCGAAATTTCATGAAATTTGTTGAAGAGCGATTTCCTGGGGATGCTGCAATTTTGTGTCCATGTAGTCGGTGTATTAACCAGAAATCCATGGCTCAAAGAGATGTGGAGAGGCACATATTGCTCAATGGGATGTCTAGTACATATACAAGATGGATTCATCATGGAGAGGCCAATGATGTTCATGTTTTGGAGGAACCAGTAGATGTGGATCCACATTCTAATCCTATAGAACATGAAAACAATGCTGCAGATAGAGTTGAAGATATCTTAACAGACCTCATGGGGGCTCAAGTACCTTGTAATAATGCAGCAAATGGAGATGGCAACCCATCTAGTAACCATGAGTCTGTTTTCAAAACTCTGATGGAAGAGGCAAAGCATGAGCTATATCCTGGTTGCACTCAATTTTCAAGGTTTTCATTTGTAGTCAAGATGCTCCATTTGAAGTCATACTACAGGATCAGCAACTCAGCATTTTCTGCACAGTTGAAAGTCTTGCGCAAAGCGTTCCCAGAGAACAATTGTCTTCCCAATTCATATGAAGAAGCAAAGAAAATGCTGCGTACTTTAGGACTGGGTTATGTGTCAATACATGTTTGCCCAAACAATTGCGTGCTATTTAGAAAGGAGTATGCAGAACTTGATACTTGTCCAGTTTGTCAAGCATCAAGATGGAAAGATCCTGTGAATAAGAAGGTTCCAGAAAAAGTATTGCGGCATTTTCCGTTGATACCTAGGCTTCAACGAATATTTGCTACCAAGAAAACAGCAGAGGAAGCACAATGGCATAAGTTGAATAGGGAACCCAAAGAGAAGGAAATGTCCCATCCTGCAGATGGAGAGGCATGGAAAGATTTTGACAAATGCTGGCCAGATTTTGCTGAAGATGCAAGGAACCTTAGGCTTGGCCTGGCTACAGACGGTTTCAATCCGTTTGGCAATATGAAGCTCGCCAGGTTGTTGATGCTTCTGAAGTTGCTCGACTTATGA
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| Protein seq | MDRRWIHGALFTPDYIDGVRNFMKFVEERFPGDAAILCPCSRCINQKSMAQRDVERHILLNGMSSTYTRWIHHGEANDVHVLEEPVDVDPHSNPIEHENNAADRVEDILTDLMGAQVPCNNAANGDGNPSSNHESVFKTLMEEAKHELYPGCTQFSRFSFVVKMLHLKSYYRISNSAFSAQLKVLRKAFPENNCLPNSYEEAKKMLRTLGLGYVSIHVCPNNCVLFRKEYAELDTCPVCQASRWKDPVNKKVPEKVLRHFPLIPRLQRIFATKKTAEEAQWHKLNREPKEKEMSHPADGEAWKDFDKCWPDFAEDARNLRLGLATDGFNPFGNMKLARLLMLLKLLDL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0271500 | OsNip_06t0271500-02 | Chr06 | 9130980 | 9134120 | - | RAP2018-11-26 | ||
| CDS seq | ATGTTTCAAGGCGAATTACAGGAAGCAGGGGTGCAAGCAGCTGATATTGATAGAAGGACTAGGCTTGGATTTGCTACTTGGTTCAGGAACCATATGTGGAGGTTGAACAATTCAGATATTGTAGATGATGACCTGTTTGCCTTAGCATGTGGCCCTGACCTGAGAGTAAGATCTTACTCTTCATGTGTTGTCAATGGTGTCCGGTTCTGTACTGCTGAGCGTGACATAAATAAGAAGACTCAAAACTCTGGAGTGGCGTGTGCTGGAATACATAATGGTCGGGTAATTGATTACTTTGGAAAGTTGACAGATATTATTGAGTTGCAGTACAACAGCAAGGATGATGGGAATACAAGAACGGTGGTTCTTTTTAGATGTGAATGGTACAAGCTAGATGGCAAGAAGACTGCACTAAAAGATGATGGTTTTTTTAGAAGCGTCAATACTGGAAGCTTTTGGTACAAGAAAGATTGTTTCATACTAGCGACTCAAGCTAAACAGATTTTCTACCTGCCAGATAATAAGCATGGCGAAAATTGGCAGCTTGTCCAAATGTTTAAGCATCGGCATTTATACAATGTTGATGAACAAAATGCACCTAGTGCATCTCCGTATCAACAGACACAGTGCATTGAGGAAGATGGGAGAAGACCAGAGGTAGATGAGAATTTATCTGACCTGCCTTTGAACCGAGATGATGAAGCTCGCCAGGTTGTTGATGCTTCTGAAGTTGCTCGACTTATGAAGCAAAATCGACCTGCTGAAGATGGTGAATCGTCTGGTGATGAGATAGAGGACGACACGGCTGTGGAATATTGGAGTGAAGGTGAAGTTGCCCCAGTTGAGGTAGATAGCGATGATGAGTAG
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| Protein seq | MFQGELQEAGVQAADIDRRTRLGFATWFRNHMWRLNNSDIVDDDLFALACGPDLRVRSYSSCVVNGVRFCTAERDINKKTQNSGVACAGIHNGRVIDYFGKLTDIIELQYNSKDDGNTRTVVLFRCEWYKLDGKKTALKDDGFFRSVNTGSFWYKKDCFILATQAKQIFYLPDNKHGENWQLVQMFKHRHLYNVDEQNAPSASPYQQTQCIEEDGRRPEVDENLSDLPLNRDDEARQVVDASEVARLMKQNRPAEDGESSGDEIEDDTAVEYWSEGEVAPVEVDSDDE
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0271500 | OsNip_06t0271500-01 | Chr06 | 9131060 | 9135885 | - | RAP2018-11-26 | ||
| CDS seq | ATGGATAGACGATGGATACATGGTGCACTTTTCACACCAGATTATATTGATGGTGTTCGAAATTTCATGAAATTTGTTGAAGAGCGATTTCCTGGGGATGCTGCAATTTTGTGTCCATGTAGTCGGTGTATTAACCAGAAATCCATGGCTCAAAGAGATGTGGAGAGGCACATATTGCTCAATGGGATGTCTAGTACATATACAAGATGGATTCATCATGGAGAGGCCAATGATGTTCATGTTTTGGAGGAACCAGTAGATGTGGATCCACATTCTAATCCTATAGAACATGAAAACAATGCTGCAGATAGAGTTGAAGATATCTTAACAGACCTCATGGGGGCTCAAGTACCTTGTAATAATGCAGCAAATGGAGATGGCAACCCATCTAGTAACCATGAGTCTGTTTTCAAAACTCTGATGGAAGAGGCAAAGCATGAGCTATATCCTGGTTGCACTCAATTTTCAAGGTTTTCATTTGTAGTCAAGATGCTCCATTTGAAGTCATACTACAGGATCAGCAACTCAGCATTTTCTGCACAGTTGAAAGTCTTGCGCAAAGCGTTCCCAGAGAACAATTGTCTTCCCAATTCATATGAAGAAGCAAAGAAAATGCTGCGTACTTTAGGACTGGGTTATGTGTCAATACATGTTTGCCCAAACAATTGCGTGCTATTTAGAAAGGAGTATGCAGAACTTGATACTTGTCCAGTTTGTCAAGCATCAAGATGGAAAGATCCTGTGAATAAGAAGGTTCCAGAAAAAGTATTGCGGCATTTTCCGTTGATACCTAGGCTTCAACGAATATTTGCTACCAAGAAAACAGCAGAGGAAGCACAATGGCATAAGTTGAATAGGGAACCCAAAGAGAAGGAAATGTCCCATCCTGCAGATGGAGAGGCATGGAAAGATTTTGACAAATGCTGGCCAGATTTTGCTGAAGATGCAAGGAACCTTAGGCTTGGCCTGGCTACAGACGGTTTCAATCCGTTTGGCAATATGAAGCTCGCCAGGTTGTTGATGCTTCTGAAGTTGCTCGACTTATGA
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| Protein seq | MDRRWIHGALFTPDYIDGVRNFMKFVEERFPGDAAILCPCSRCINQKSMAQRDVERHILLNGMSSTYTRWIHHGEANDVHVLEEPVDVDPHSNPIEHENNAADRVEDILTDLMGAQVPCNNAANGDGNPSSNHESVFKTLMEEAKHELYPGCTQFSRFSFVVKMLHLKSYYRISNSAFSAQLKVLRKAFPENNCLPNSYEEAKKMLRTLGLGYVSIHVCPNNCVLFRKEYAELDTCPVCQASRWKDPVNKKVPEKVLRHFPLIPRLQRIFATKKTAEEAQWHKLNREPKEKEMSHPADGEAWKDFDKCWPDFAEDARNLRLGLATDGFNPFGNMKLARLLMLLKLLDL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0271500 | OsNip_06t0271500-03 | Chr06 | 9131062 | 9136074 | - | IsoSeq | ||
| CDS seq | GGCAGCCAGGGAGAGGAAGCCCGCGGCGCCGCGTCAGGCCGCCAGCGCCAGTCGCCTCGCCGTCGCCGGTCGGCGGTCGCCCTGCGCCCGCCCGGCGCCCGACCGCCCGTCGTCCTCCGGCCCGCCCCGTCGCCCGTCGGCCATCGCCCCGCCCCCTTGCGCGCGGCGGCGCGGCCCGCCGTGCACTCGCTGACTCGCGATTTCGCGCCGTGCCGCCGCCCGTCCGGTCGTCCCGGCATCCCGTCTCGTCGCCTCCCTAGTCCGGCGACACGCCGACGCCAGAATGCCACGCCACGGCGCCGCACCAGCCCGCCACCGCCACTGGACGCCAGCGCGCTGAAGTTGAAAACCTGGGCCTGCCGGCGACTGTGCGGCAGCAGTGAAGGAAAAGAAGTGGGGCGTGGGGTGGAAGCGGCGAAGGCGGGGGGCGGCATCGGCGAAGGCGGGGGGCGGCATCGGCGAAGGCGAGGTGCGACAGCGTCGGAGGCTGGGTACAGCAGCGATGGAGGGGGGGGGGGGGTG
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| Protein seq | GSQGEEARGAASGRQRQSPRRRRSAVALRPPGARPPVVLRPAPSPVGHRPAPLRAAARPAVHSLTRDFAPCRRPSGRPGIPSRRLPSPATRRRQNATPRRRTSPPPPLDASALKLKTWACRRLCGSSEGKEVGRGVEAAKAGGGIGEGGGRHRRRRGATASEAGYSSDGGGGGV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.699731 | 6.509808 | 8.311988 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g13270 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0271500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0149300 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0127500 | RBH | 6.7100925 | 10.41945 | 13.866225 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
