Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g0267400 | OGI:06025060 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:8876051-8877757 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTACATACGAGTGGTTTGCACTACATATACGTGGTTTCCAATTTTCCCGGATGATGAGCCCAGGCGACAAACCTCTCGACTCGACGACCTCGAAGGCTCGAACGACTGGACGTCCTGCCCATCGGGGAGCTCCCACTCAAACCAGCACGCCATGTTCGCCACCACGAGCTCCGCGAGCCGCGTCGCGAACGCCATGCCGGGGCACCCCCTCCTGCCGGCGCCGAACGGCATGAACCGGAAGTCGCCGCCGCCGCCGTAGTACTCGACGCCGGCGTTGTCCCCGCCGTCGGCGAACCTCCCCGGCCTGAACTCCCCCGCGTCCTCCCACGCCGCCTCGTCCCTCCCGATCGCCCACGCGTTGATCATCACGCGCGTCCCCGCCGCGACGCGGTGGCCGTGGAGCACCGTGTCCTGGATCGCCTCGCGCGGGATGAGCAGCGGCAGCGGTGGGTGGAGGCGCATCGCCTCCTTCATCGCCGCCCGGAGGAGCGTCATCTTCCCCAGCTGCTCGCCTGCTCCTCCTTGACGATGACGACGGCGTCTTCGTCTCCTTCTCCTCCGTGTGCAGCTGCTACGACATGTCTCACCTCTGCTTGCACTTTCGCCATTTCTGCTGGGTTCTTGATGAGCTCGGCCATTGTTCATTCTATCGACTTGTAGACTGTGTCCGTGCCTGCCGCGAACATGTCCTGCAATGCGACATGAAAGAAATCGAAACGAATTTTAGCATGATTATTTGATTGGTGATAATTGGAGAGAACTTACCAAGATGAGGAGTCCCTTGACATCGATCCTGTCGAGCTTGTAGCCATGGTCGTCGCCGCCGTTGGCCATGGAGAGAAGGTCGTCCATGAGGTCACGGGCCTCGCCGTCGCCGTCGTCGTCGTCGTCGTCCCCGCGGCTCGGCTCGTGGTCACGGAGCACCATCTCGAGAACCTCGTCGAGCTTGGCCGCCGTCCTCTTCGTCCTCGCGTCGAGCCCCGTCGCCCAGTCCACCCACCGGAGCCGCGGGAACATGTCGCTCACTGCGATCGTCCCCAGCAGGTCGGCGAGCTCCCCCACCGTCTCGCGGACCTTCGCCGGCTCGACGCCGCCGAGCTTCTTCCCGAACGCCGCCCTCGACACGACGGCGTGGGTCAGGCCGACGATGAGCTCGGTCAAGTTGACGACGCCTCCGCCTCCGCCGCTCGCCGCGCGGATCCGGTTCACGAACGACGCGACCTCCTCCTCCCGGAGGGCGCGGAACGAGTCGACCCGCCTCGCGCTGAGGAGGTGCACGACGGCGACGCGGCGGAGGCGGCGCCACCGCTCGCCGTAGGGGCTGAACGCGACGTCCCGGCAGCCGTACAGCGTGCCCCGCGCCGTGTGCTGCTGCGGCCGGCCGCAGAACACGTGGTCCTGGTGCCTGAGCACGGCCTCCGCCATGGACGCCGAGGAGACGACGAGCGCGCGCACGGAGCCGAGCCGGAGCTGGAACAGCGGGCCGTGCCGCCGCGCGAGCTCGCGCAGCGCCCGGTGGTGCCGCCCGCGGCCGAGCTGGTGGAGGTTGCCGATGACCGGCAACGCCGGCGGCGACGTGATCGCCGCGCCACCACGGCCACCGTCCGCGCCGCCCGATCTCAGGTAGCTCCTAACCGCGACGACCAAGCACGTCGCCAAGAAGAGAAAGCCGATGAGCAGGCCGGAGTCGAGCTGCACGGCCGCCAT
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| CDS seq | ATGGCGGCCGTGCAGCTCGACTCCGGCCTGCTCATCGGCTTTCTCTTCTTGGCGACGTGCTTGGTCGTCGCGGTTAGGAGCTACCTGAGATCGGGCGGCGCGGACGGTGGCCGTGGTGGCGCGGCGATCACGTCGCCGCCGGCGTTGCCGGTCATCGGCAACCTCCACCAGCTCGGCCGCGGGCGGCACCACCGGGCGCTGCGCGAGCTCGCGCGGCGGCACGGCCCGCTGTTCCAGCTCCGGCTCGGCTCCGTGCGCGCGCTCGTCGTCTCCTCGGCGTCCATGGCGGAGGCCGTGCTCAGGCACCAGGACCACGTGTTCTGCGGCCGGCCGCAGCAGCACACGGCGCGGGGCACGCTGTACGGCTGCCGGGACGTCGCGTTCAGCCCCTACGGCGAGCGGTGGCGCCGCCTCCGCCGCGTCGCCGTCGTGCACCTCCTCAGCGCGAGGCGGGTCGACTCGTTCCGCGCCCTCCGGGAGGAGGAGGTCGCGTCGTTCGTGAACCGGATCCGCGCGGCGAGCGGCGGAGGCGGAGGCGTCGTCAACTTGACCGAGCTCATCGTCGGCCTGACCCACGCCGTCGTGTCGAGGGCGGCGTTCGGGAAGAAGCTCGGCGGCGTCGAGCCGGCGAAGGTCCGCGAGACGGTGGGGGAGCTCGCCGACCTGCTGGGGACGATCGCAACATGTCGTAGCAGCTGCACACGGAGGAGAAGGAGACGAAGACGCCGTCGTCATCGTCAAGGAGGAGCAGGCGAGCAGCTGGGGAAGATGACGCTCCTCCGGGCGGCGATGAAGGAGGCGATGCGCCTCCACCCACCGCTGCCGCTGCTCATCCCGCGCGAGGCGATCCAGGACACGGTGCTCCACGGCCACCGCGTCGCGGCGGGGACGCGCGTGATGATCAACGCGTGGGCGATCGGGAGGGACGAGGCGGCGTGGGAGGACGCGGGGGAGTTCAGGCCGGGGAGGTTCGCCGACGGCGGGGACAACGCCGGCGTCGAGTACTACGGCGGCGGCGGCGACTTCCGGTTCATGCCGTTCGGCGCCGGCAGGAGGGGGTGCCCCGGCATGGCGTTCGCGACGCGGCTCGCGGAGCTCGTGGTGGCGAACATGGCGTGCTGGTTTGAGTGGGAGCTCCCCGATGGGCAGGACGTCCAGTCGTTCGAGCCTTCGAGGTCGTCGAGTCGAGAGGTTTGTCGCCTGGGCTCATCATCCGGGAAAATTGGAAACCACGTATATGTAGTGCAAACCACTCGTATGTAG
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| Protein seq | MAAVQLDSGLLIGFLFLATCLVVAVRSYLRSGGADGGRGGAAITSPPALPVIGNLHQLGRGRHHRALRELARRHGPLFQLRLGSVRALVVSSASMAEAVLRHQDHVFCGRPQQHTARGTLYGCRDVAFSPYGERWRRLRRVAVVHLLSARRVDSFRALREEEVASFVNRIRAASGGGGGVVNLTELIVGLTHAVVSRAAFGKKLGGVEPAKVRETVGELADLLGTIATCRSSCTRRRRRRRRRRHRQGGAGEQLGKMTLLRAAMKEAMRLHPPLPLLIPREAIQDTVLHGHRVAAGTRVMINAWAIGRDEAAWEDAGEFRPGRFADGGDNAGVEYYGGGGDFRFMPFGAGRRGCPGMAFATRLAELVVANMACWFEWELPDGQDVQSFEPSRSSSREVCRLGSSSGKIGNHVYVVQTTRM |
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| Function | Cytochrome P450 71A25 [UniProtKB/Swiss-Prot:Q9STK8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0267400 | OsNip_06t0267400-00 | Chr06 | 8876051 | 8877757 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCGGCCGTGCAGCTCGACTCCGGCCTGCTCATCGGCTTTCTCTTCTTGGCGACGTGCTTGGTCGTCGCGGTTAGGAGCTACCTGAGATCGGGCGGCGCGGACGGTGGCCGTGGTGGCGCGGCGATCACGTCGCCGCCGGCGTTGCCGGTCATCGGCAACCTCCACCAGCTCGGCCGCGGGCGGCACCACCGGGCGCTGCGCGAGCTCGCGCGGCGGCACGGCCCGCTGTTCCAGCTCCGGCTCGGCTCCGTGCGCGCGCTCGTCGTCTCCTCGGCGTCCATGGCGGAGGCCGTGCTCAGGCACCAGGACCACGTGTTCTGCGGCCGGCCGCAGCAGCACACGGCGCGGGGCACGCTGTACGGCTGCCGGGACGTCGCGTTCAGCCCCTACGGCGAGCGGTGGCGCCGCCTCCGCCGCGTCGCCGTCGTGCACCTCCTCAGCGCGAGGCGGGTCGACTCGTTCCGCGCCCTCCGGGAGGAGGAGGTCGCGTCGTTCGTGAACCGGATCCGCGCGGCGAGCGGCGGAGGCGGAGGCGTCGTCAACTTGACCGAGCTCATCGTCGGCCTGACCCACGCCGTCGTGTCGAGGGCGGCGTTCGGGAAGAAGCTCGGCGGCGTCGAGCCGGCGAAGGTCCGCGAGACGGTGGGGGAGCTCGCCGACCTGCTGGGGACGATCGCAACATGTCGTAGCAGCTGCACACGGAGGAGAAGGAGACGAAGACGCCGTCGTCATCGTCAAGGAGGAGCAGGCGAGCAGCTGGGGAAGATGACGCTCCTCCGGGCGGCGATGAAGGAGGCGATGCGCCTCCACCCACCGCTGCCGCTGCTCATCCCGCGCGAGGCGATCCAGGACACGGTGCTCCACGGCCACCGCGTCGCGGCGGGGACGCGCGTGATGATCAACGCGTGGGCGATCGGGAGGGACGAGGCGGCGTGGGAGGACGCGGGGGAGTTCAGGCCGGGGAGGTTCGCCGACGGCGGGGACAACGCCGGCGTCGAGTACTACGGCGGCGGCGGCGACTTCCGGTTCATGCCGTTCGGCGCCGGCAGGAGGGGGTGCCCCGGCATGGCGTTCGCGACGCGGCTCGCGGAGCTCGTGGTGGCGAACATGGCGTGCTGGTTTGAGTGGGAGCTCCCCGATGGGCAGGACGTCCAGTCGTTCGAGCCTTCGAGGTCGTCGAGTCGAGAGGTTTGTCGCCTGGGCTCATCATCCGGGAAAATTGGAAACCACGTATATGTAGTGCAAACCACTCGTATGTAG
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| Protein seq | MAAVQLDSGLLIGFLFLATCLVVAVRSYLRSGGADGGRGGAAITSPPALPVIGNLHQLGRGRHHRALRELARRHGPLFQLRLGSVRALVVSSASMAEAVLRHQDHVFCGRPQQHTARGTLYGCRDVAFSPYGERWRRLRRVAVVHLLSARRVDSFRALREEEVASFVNRIRAASGGGGGVVNLTELIVGLTHAVVSRAAFGKKLGGVEPAKVRETVGELADLLGTIATCRSSCTRRRRRRRRRRHRQGGAGEQLGKMTLLRAAMKEAMRLHPPLPLLIPREAIQDTVLHGHRVAAGTRVMINAWAIGRDEAAWEDAGEFRPGRFADGGDNAGVEYYGGGGDFRFMPFGAGRRGCPGMAFATRLAELVVANMACWFEWELPDGQDVQSFEPSRSSSREVCRLGSSSGKIGNHVYVVQTTRM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g15680 | RBH | 0.200957 | 0.102996 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0267400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0010860 | RBH | 0.100836 | 1.379017 | 1.009885 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0010740 | RBH | 0.436780 | 0.0 | 0.170410 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0010720 | RBH | 0.699586 | 0.0 | 0.233431 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0010740 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0010870 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0148200 | RBH | 2.025237 | 0.0534095 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0010430 | RBH | 0.000000 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0145200 | RBH | 0.265313 | 0 | 0.023763 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0010890 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0010720 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0010780 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0010940 | RBH | 0.0 | 0.0 | 0.285796 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0010660 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G010530 | RBH | 0.097990 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0010820 | RBH | 0.000000 | 0.0 | 0.0 |
