Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g0205100 | OGI:06015140 | 8/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:5315163-5316879 | ||||||||
| Gene Symbol | C, C, Cp, OsC1, Os-C1, C1, OsMyb6, Myb6, OsPL6, PL6, OsGL1E, GL1E | ||||||||||
| DNA seq | AGGCTCTGATGCGCACCAGATCGCTCAGTCTCACACCGCACAGAGACAGAGAAGAGCTCTAGAGAGAACGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGGGAGAATGGGGAGGAGAGCTTGCTGCGCAAAGGAAGGGATGAAGAGAGGGGCATGGACGAGCAAGGAGGACGACGTGCTTGCCTCCTACATCAAGTCCCATGGCGAAGGCAAGTGGCGCGAGGTCCCCCAACGAGCTGGTGAGCTAGCTATTACCTAATCGATCGATGGTCATCGATCATGAGATGATGATGATGAGATTTGTACTTAATTGTGATCTGTATGGATGCTGTTGTTGATCAAGTTCTTGCGATCGATCGATCTGAATTTTCAGGTTTGAGGCGGTGCGGCAAGAGCTGCAGGCTCCGGTGGCTCAACTATCTCCGGCCTAACATCAAGCGCGGCAACATCGACGACGACGAGGAGCTCATCGTCAGGCTCCACACCCTCCTCGGCAACAGGTAATCTCATCACTTCATGATCACTCCGAGTTCCGTATCAATTTCGTTGAGTTCACAGCTTAAATTTGGAGCTATTTGGTACTGTCGGTGTGTGGATAGTGATATACTTTTTTCTTTTCCTGGTTACGGCTTTTTAGGGTTGTAATATAAACTTCGCAACTTCTTATACGAGTCATTCGAAAAAAATTTGAAGCTGGCTAACGCTAGACAATAATAAGCTGATTTAACTTCTGTTTTATTTTTATTTATTTTTATCTTTATCTTTTTTAACAAATTTGTAATTTGAGCTGTGAAATCATAGCTTACTGCCGTTTTGATCGATCGTGTATATATGTTGTCAGGTGGTCTCTCATTGCAGGCAGGCTGCCGGGCCGAACAGACAATGAAATCAAGAACTACTGGAACAGCACGCTCAGCCGCAAGATCGGCACCGCCGCCACCGCCGCCGCCGGCAGCCGCGGTGGCAGCACGCCGGACACCGCCAGAGCGACGGACGCGGCGTCGTCCAGCTCCGTCGTGCCGCCGGGCCAGCAGCAGCAGCCAGCCTCCCGCGCCGACACCGACACAGCAACGGCAGCGGCGGCGGCGGCGGCGACGACGACCACCGTGTGGGCGCCCAAGGCCGTGCGGTGCACGCGCGGGTTCTTCTTCCACGACCGTGAAACGGCGCCGCTCGCCGCGGCGGCGCCGGCGCCGGCAGGGGAATTAGGAGACGGCGATGACGTCGACTGCGACTACTACTGCAGCGGCAGCAGCTCGGCGGCGACGACGACGTCGTCGAGCTCATTACCGGCGGTCGTCGAGCCGTGCTTCTCCGCCGGCGACGACTGGATGGACGACGTGAGAGCCTTGGCGTCGTTTCTTGACACCGACGACGCCTGGAACTTGTGTGCGTGACATTAGTTCGTCGTCCGTACGTACCTACGTATATGCATGTGTGCGTCTCATAGAATGAATATAAAATAATATTTTCTCCATCTATTTTAAGTGCAGTTGCGGGTTTCCGTATATAAAATTAACGATTTTGCTATATATTTGTCGACAAATTTTCTCCTAAAAATTTGACAGATGTAATTACAGTACAATCGTAGTATAATTACACTGTAACTTTCATGTAATTACACTGTAACTATAGTGTAACTTGTATGTAACTTTCAAAAATCTCTTTGTAATATGTTATTTCGGTAAAATGGAGGTTGTGGGAACAAATTCTTACAC
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| CDS seq | TGCGCACCAGATCGCTCAGTCTCACACCGCACAGAGACAGAGAAGAGCTCCGTCGTGCCGCCGGGCCAGCAGCAGCAGCCAGCCTCCCGCGCCGACACCGACACAGCAACGGCAGCGGCGGCGGCGGCGGCGACGACGACCACCGTGTGGGCGCCCAAGGCCGTGCGGTGCACGCGCGGGTTCTTCTTCCACGACCGTGAAACGGCGCCGCTCGCCGCGGCGGCGCCGGCGCCGGCAGGGGAATTAGGAGACGGCGATGACGTCGACTGCGACTACTACTGCAGCGGCAGCAGCTCGGCGGCGACGACGACGTCGTCGAGCTCATTACCGGCGGTCGTCGAGCCGTGCTTCTCCGCCGGCGACGACTGGATGGACGACGTGAGAGCCTTGGCGTCGTTTCTTGACACCGACGACGCCTGGAACTTGTGTGCGTGA
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| Protein seq | CAPDRSVSHRTETEKSSVVPPGQQQQPASRADTDTATAAAAAAATTTTVWAPKAVRCTRGFFFHDRETAPLAAAAPAPAGELGDGDDVDCDYYCSGSSSAATTTSSSSLPAVVEPCFSAGDDWMDDVRALASFLDTDDAWNLCA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0205100 | OsNip_06t0205100-01 | Chr06 | 5315163 | 5316640 | + | RAP2018-11-26 | ||
| CDS seq | TGCGCACCAGATCGCTCAGTCTCACACCGCACAGAGACAGAGAAGAGCTCCGTCGTGCCGCCGGGCCAGCAGCAGCAGCCAGCCTCCCGCGCCGACACCGACACAGCAACGGCAGCGGCGGCGGCGGCGGCGACGACGACCACCGTGTGGGCGCCCAAGGCCGTGCGGTGCACGCGCGGGTTCTTCTTCCACGACCGTGAAACGGCGCCGCTCGCCGCGGCGGCGCCGGCGCCGGCAGGGGAATTAGGAGACGGCGATGACGTCGACTGCGACTACTACTGCAGCGGCAGCAGCTCGGCGGCGACGACGACGTCGTCGAGCTCATTACCGGCGGTCGTCGAGCCGTGCTTCTCCGCCGGCGACGACTGGATGGACGACGTGAGAGCCTTGGCGTCGTTTCTTGACACCGACGACGCCTGGAACTTGTGTGCGTGA
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| Protein seq | CAPDRSVSHRTETEKSSVVPPGQQQQPASRADTDTATAAAAAAATTTTVWAPKAVRCTRGFFFHDRETAPLAAAAPAPAGELGDGDDVDCDYYCSGSSSAATTTSSSSLPAVVEPCFSAGDDWMDDVRALASFLDTDDAWNLCA |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0205100 | OsNip_06t0205100-02 | Chr06 | 5315164 | 5316879 | + | IsoSeq | ||
| CDS seq | ATGAAATCAAGAACTACTGGAACAGCACGCTCAGCCGCAAGATCGGCACCGCCGCCACCGCCGCCGCCGGCAGCCGCGGTGGCAGCACGCCGGACACCGCCAGAGCGACGGACGCGGCGTCGTCCAGCTCCGTCGTGCCGCCGGGCCAGCAGCAGCAGCCAGCCTCCCGCGCCGACACCGACACAGCAACGGCAGCGGCGGCGGCGGCGGCGACGACGACCACCGTGTGGGCGCCCAAGGCCGTGCGGTGCACGCGCGGGTTCTTCTTCCACGACCGTGAAACGGCGCCGCTCGCCGCGGCGGCGCCGGCGCCGGCAGGGG
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| Protein seq | MKSRTTGTARSAARSAPPPPPPPAAAVAARRTPPERRTRRRPAPSCRRASSSSQPPAPTPTQQRQRRRRRRRRPPCGRPRPCGARAGSSSTTVKRRRSPRRRRRRQG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 1.063814 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g10350 | RBH | 0.0 | 0.0 | 0.501561 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0205100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0007270 | RBH | 0.382840 | 6.294585 | 2.910519 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0007080 | RBH | 0.0 | 0.887299 | 1.113489 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0007120 | RBH | 1.018080 | 5.389510 | 1.416468 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0007190 | RBH | 0.0 | 0.080583 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0007090 | RBH | 0.000000 | 2.961487 | 1.428974 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0089000 | RBH | 0.8046905 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0006880 | RBH | 0.0 | 0.000000 | 0.376599 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0089000 | RBH | 3.544982 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0007280 | RBH | 0.276671 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0007150 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0007200 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0007220 | RBH | 0.000000 | 0.000000 | 1.703355 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0007070 | RBH | 0.000000 | 1.189252 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G006950 | RBH | 0.874735 | 1.459327 | 0.285933 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0007220 | RBH | 0.295100 | 0.0 | 0.948728 |
