Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g0198800 | OGI:06014060 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:5012418-5016656 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAGTCACATGCAGCAGAGATATTGTAATATAGGATATTCAGCCTGAATTCTTACATGAGTTTGCAAAATAAAATGCAATATCATCCCAATATAAAAAAATTCAACTCTACAGAGCTCTTGTATATACGGTTCCAAGGGTTCACAAAATCAAGTCCGAGTTCCGTTATAAGGTCTACTGTATGCTACAACGAATTGGCTTGAATAGCTTGTCGGGAGGAGGGTGAAAGGCAGCTGAAGTAGTCGCTTGAATGGGCAGATACGGGATACAAGTCACCAAAGCATCTCTTGATATCTCTTGATCCAGAATCTACCTAAATTTTCGGTTTTTCTTGCACCAGTGTGGTAATGCAGGCCCAGCTTCCTTAGTTTAGTGCAGTTACCATATCTTGTTCTTCAACCAAAAGAGCATCAAAACTACACCGATCACAATGGCAACAGGGGCATACTTCCGAATCAAGGCCTGAAATGAAAAAAAGGGGTTGTGCATACCATAAATGAGACGCTGAAAAACGTGGGTAAAACATGTAGATGAATGCAGGTTGAGATTAATGGCAACATGACGACAAACATTGTGATACAAACTAGCAAATGCCAATGTGGATATCCACGTTACTAGTCAAGACTTCTGACCAGGCATGCTGCTAAAGCCATTTGGTTGCTTCATTTAAATGGTTGAGAGAACTCGTGAGGAATAATGTTAGGTTGCTCCTAGAATCCAATGAAACGGACCAATTGATCGTAAATAGTGTAATAAACACTACTGGCAAACATCATTTTGTTAGCTAAAGGGAGCTTCTAAAAATAAGCTCATGGAAATGTTTGCTAATGTTGGAGGCAACAAGGAATTATAGTGACTATATTAATTTAGGTCCTGGAAGTATAGGCGATTTTATCATCGTACTTGTATGCTACTTAATGTGAATAGCACATGCTTAACTGCACATAAATAATATCAGATGTTTCAGTGATATAAATACTGATATTTCTAACAATTCTAATAGAAAAAAGCTCTGCACAGCAGGCAAATGCATCTGCTAAAAGTTGTGCATGTCATTGTGTAAATGGATTACCTGGCGATTGAGATCCTTAGCCTTATCTGCATAGATTCTTGTGTCAGAAGTCAGCCTAGTTGACATTTCAGTGACCTCTGCAAAGATTGAGCAATATTTTAATAGTCAAACCGGAATATCAGTTATCACACAATGAAGTGCAAAGAAAAGGTAAAGGTGGGCACAATTCTTTAGTAGTGAAAACATCAGAATCAGGCCAGTTAAATGCAAAAGGCAGTAAGTTGACATTAGTGCAAATAAGCTTTTGAAGGCTATTGAAAGGACAAGCTGGTAAGCCTGAGGCATGCATGTTACAGAAATCTGATGGTTTATTGTATCAGGACATATACTGTGAAGGTAGAACTAAGAGATATTTGCAAACTTACGGTCTAGCTTTTCACCGACACCAAGAACTTCTTGAACATTACGAGTCATAATTTGATGCACCTCATAGAGCTCATCATTTAATTTCGCAAGATTCCTCTGGGTTCTAGTATCCAAATAGAGTTTCTTAGTCTTCTGAATGAATGTGTCTAGATAGAAAGAGGAATACGTTATCAACCAGTTGAACTTGAGTAGATAATTGAAAAAAGTGCTGGCATGAGAACTCTAGAAACATACCAAACTTAATAAACGCATACGGCCTTGCAGCTGTTTCGATTTGACTGCCGTTGACTCTTTCGAATTCATTTCTCAGATCTTCTAGGTACTGGAATGCGAGTTTCTTTGGATAAGAACGGTCACACATAGTCAGATAGCATACTCGCCCCTCAATGATGTAACTGTTTATTTGAATTAAGGTTCAACAAGATCACACTGCAATAAACTTAGCAAACCAATACAAGCTAAAACATGCATTACAAGAACAACATTAGCTGGGTGCTGAGTGCTGCCTTTTCTCAACAGAACACGATGTAAGTCTCAGGTTAAATAAGCTTATGATCTTAAAGTTAGTAATGATAAATGGACTCAAATATTAATAGCAAGATCAACAAGAGCATCAAATAAGTACCATGTGCTTGCAAGTTGTAAGATCCTAAAAATTAAGTGAATGCTATAGAAAATAGAGAAATACTAGAGAATATATAGACTAGCTATTGTACAGTCATGATTGATAATTTGGACCAATCACATAGATTCATCAAATGCCTACCCATTTTCTTGTTTACCTGTGTAGCTATACAACTATCCAGCATATTTGAAATCTTCATTACCAGCAAAGAAATGTAATGAGATGCAACGTGTGAACTTGATAAAAAAAAATATCCGAATGACTGTGCACATTCAGATGTCAATATTTAGCAGCCAGATATGCTATATCACACGGACTGCAAAAGAACAGAAACAAATTCAACAGTCATGAACAATACCCAGAATAAAATAGCCACAGAGAACATAAGGATACTGAAAATAGTATGGCCCAGTCTCAATTGACATCCGCGAGGCTTCATGTTGCCCCTTTGATAAGTTTTTGAATAGAAGTTTAGCTTGCTGCTTGTAAAAGTCAGCGTCCTTCTGATCCCGTCCATCATCCAACCCTTCTGCCAGTGGAAGGCCATCAGTAACACGTGCTATCATTGTCAGCTTCACCATTTTGTCAAGAAATCCAGAAACCAGTGCAAACTACACCAAAATACCGAAAGAACCTGCCAGGGGAAAAAAAGGTGAATTAAGGTGTGGTTCCAACTTCAAGTGTTATTTTATATATTTCATAATATTAGATACTTAGTTTTCTAGTCAACATATAAATAAGAAATCCAGCAAAGAGACCAGCACCACCGCCCAAGAATTTCATGTCCTTTTGCAGGAAATCCAGGAAAGAGATCATCACCACCACCGAAGCATTTCATGTCATTTTGCAGTATCGCATTTCTTAGGGCAATTTTAGAATCACATACGTTCCAGTGATTAAGGATGACTAATCCTTTGCACAAATCCATATCAATACACATTCTACACAGCAAGTAAAAATAACATGGACCCAAATTCATATGTACGAAATACATAGGGCCTGTTCAGATTGTAGCCACTTTCAACCCTTCCAAAATTTGGCATTGTCAAACTTCGGCACATTTTGGCACTACCAAATTTTGGTTGTGTTAGTTTGTTGCCTTATCAAAATTTGGTAGAATTTTTAGGAGCGGAAACTTCTAGAATTACCAAAATTTGGTAGGGTAGCATTGATAAGTACGTGTTTGGTTTGTAGTCTTACCAAATTTTGGTAATGTCAAATTTTGGTATGGTTAAAAGTGGCAACAAAGTGAACAGCCCATAGTTTCAATCTAAACAATTCTGAATCAGAATGCCACCATTAAACATAAACCTCACAGAGCAGCTCACAAACACAACCTAGCACAGGGGAAATCAGAAATGCAGGGACAAAAACATCAAATCCTATTCTTCTTAATTCACCAAATACCAAGAACACTCAAATCCCTTATCTATACTGCATTGATAACTCCCCTAGATGAATGAATCCTAATTTTTCCAAACATTGGGTGCTCGTACTGCCACCTCGGGCAAGCATAATGCATGAGACATAATATGAGACACTAAATGACCTATGCATCAAACCCCACTCCAAATTACCATTACTCTCAAGCACACAGCGACAGTAAATGCATCAATCAGCACTCGGAACTCTGCAAACAGGACAGTCTGATGAGTCAATTTCCGCGACTAGCACCACCCAATTCTCCCGAGCAAACTACTAGACCAAAAATAGCTGAAATTACGATACAAATAATCAACCCATGTAAAAAAAATCAACAAAAAATGAAAAGCAAAGGAAACACCATCTAGAATGACGCGAGATCCACGCAATTCAACTACACGAACAGACCGAGCAATACTTGAAAGCATTCACTAGATCACAGTGAGGCCAACCAGCTGGACGGATCACAACGAGCAGCAGCCACTATAGATTCGAGCCGCGTCAGATCTGGCCGGATCTGGACGAGCCACAGTGAAACGAGAGGAGTAGAGAAAGGGAGAGGGGAGGCGGAGCGTACAGGAAGGGATCGAGGCGGTTGAAGGGGGAGGCGACGCGGTGGCCGTCTCCGGCGGGGAGAGCCGAAGAGATCGCGGCCGCGGAGTCGCCGGAGCCCGGAGGACGCGGATGCTTCGACAGCCCCACCGTTCCGTCTTCTTCACTTCTTTTTTTTCTTTTTTTTTTTGATAAGCTTCACTT
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| CDS seq | ATGGTGAAGCTGACAATGATAGCACGTGTTACTGATGGCCTTCCACTGGCAGAAGGGTTGGATGATGGACGGGATCAGAAGGACGCTGACTTTTACAAGCAGCAAGCTAAACTTCTATTCAAAAACTTATCAAAGGGGCAACATGAAGCCTCGCGGATGTCAATTGAGACTGGGCCATACTATTTTCAGTATCCTTATGTTCTCTGTGGCTATTTTATTCTGGGTATTGTTCATGACTGTTGA |
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| Protein seq | MVKLTMIARVTDGLPLAEGLDDGRDQKDADFYKQQAKLLFKNLSKGQHEASRMSIETGPYYFQYPYVLCGYFILGIVHDC |
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| Function | 25.3 kDa vesicle transport protein [UniProtKB/Swiss-Prot:Q94AU2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0198800 | OsNip_06t0198800-01 | Chr06 | 5012418 | 5016651 | - | RAP2018-11-26 | ||
| CDS seq | ATGGTGAAGCTGACAATGATAGCACGTGTTACTGATGGCCTTCCACTGGCAGAAGGGTTGGATGATGGACGGGATCAGAAGGACGCTGACTTTTACAAGCAGCAAGCTAAACTTCTATTCAAAAACTTATCAAAGGGGCAACATGAAGCCTCGCGGATGTCAATTGAGACTGGGCCATACTATTTTCAGTATCCTTATGTTCTCTGTGGCTATTTTATTCTGGGTATTGTTCATGACTGTTGA
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| Protein seq | MVKLTMIARVTDGLPLAEGLDDGRDQKDADFYKQQAKLLFKNLSKGQHEASRMSIETGPYYFQYPYVLCGYFILGIVHDC |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0198800 | OsNip_06t0198800-02 | Chr06 | 5012419 | 5016656 | - | IsoSeq | ||
| CDS seq | ATGAATTCGAAAGAGTCAACGGCAGTCAAATCGAAACAGCTGCAAGGCCGTATGCGTTTATTAAGTTTGACACATTCATTCAGAAGACTAAGAAACTCTATTTGGATACTAGAACCCAGAGGAATCTTGCGA |
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| Protein seq | MNSKESTAVKSKQLQGRMRLLSLTHSFRRLRNSIWILEPRGILR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr06 | 5013956 | 5014088 | - | OsNip_06t0198800-02 | OsNip_06t0198800-01,OsNip_06t0198800-02 | All |
| RI | Chr06 | 5014088 | 5015112 | - | OsNip_06t0198800-01 | OsNip_06t0198800-01,OsNip_06t0198800-02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.389748 | 4.251950 | 8.183617 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0791500 | SBH | 1.121985 | 0.0 | 6.216726 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g09850 | RBH | 2.215133 | 2.761605 | 2.213837 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0198800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0006810 | RBH | 2.491884 | 29.986612 | 15.605872 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0006640 | RBH | 0.465878 | 9.759845 | 8.279016 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0006640 | RBH | 4.018867 | 53.506756 | 28.804758 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0006740 | RBH | 0.082484 | 1.173050 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0006640 | RBH | 15.823041 | 50.113846 | 39.778770 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0083600 | RBH | 15.687107 | 32.041546 | 25.0664425 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0006470 | RBH | 0.442187 | 3.472131 | 3.853546 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0082600 | RBH | 14.625155 | 15.903562 | 29.6433175 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0006850 | RBH | 0.646797 | 0.194259 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0006720 | RBH | 1.959949 | 47.398949 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0006760 | RBH | 10.471254 | 64.071564 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0006770 | RBH | 0.596938 | 1.837884 | 2.213343 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0006630 | RBH | 0.415284 | 12.894890 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G006480 | RBH | 1.472421 | 14.044738 | 9.756175 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0006760 | RBH | 1.651137 | 48.592117 | 16.336857 |
