Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g0186300 | OGI:06012400 | 13/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:4339307-4342791 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAATTGGAGAACAGCGAGTCGTCCTTGGTCGTCGACAACGACCTGCCGTCGTCGTCGTCCTCGTCCTCGTCGGTGGCGGCGGCGATGGCGGCGGCGGCGGCGGCGTGCCTCCTGATAGCCTCGTTGAGCAACGTGATCTCGTGGCAGACGTCCACCATGCTCGGCCGCAGCGCCGGCGAGTGCTGCGTGCACACGAGCCCGAGCTCGATGAGCTCGACGGCGGCCACGTCGGCCGCCGCCGGCGACGCCGCCGTCGACATCGGCGACGGCGCCTCCCGGCGCCACGGCGCGTGCGCGACGACGGCGGCGACGTCGTGCGGGTAGTGTCGCCTGACCCAGTCGTGCAGCGTGAGGCCCTCGTGGAAGATGACGTCGGTCGGCCTCTTCCCGGTGATCAGCTCGAGTATCATCACGCCGAAGCTGTACACGTCACCCTGTCGAGATGGATGCCCTCCTAATCCATATTCTAATCACAAAATCAAACACGTAATTAGTAAGGGACTATCTTAAAAAACTGAAAAACTTTCAAATCTAAATATATATGTATCTGTGATATAATTTCACTACAACTATAATATAATTTGTATATATAATTTTATATGTAACTTATATAGATATTACAATATAGTTATAGTACAATTACACTATAATATAACTATATTATAGTTATAATATAGTTATAATATAACTATAGTATAATCATATTATAATTACTACAGCTATAGTATACACTATAGTAACGTTCGAAAGTTTTTTTTTTCTCAGAATACATGCACAATTCCGATTAGTAATAAGATGGTGAGATAAGTGCAAGTTAATTGCAAAAAAGTTGTGTGAATGGATGCATGGATGCATGCGACGTGCACGTACCAGGCGCGATGTATCCGACCGAGCCTTGCAAGAGTCCGGTGATGGAGTTGCACGGTGCGGACTCGTCGCTCGTGCTGCTGGCGCCGCCGTCTCCGACGGCGGCGGCGGCGCCGGAGATGAGCTTGGCGATGCCGAAGTCGGAGATCACGGCGCGCATGTCGTCGTCGAGGAGGACGTTGCTGGGCTTGAGGTCGCAGTGCACCACCCTCACCGGCGCGTAGTGGTGCAGGTACGCGAGCCCCTCCGCGACGTCGCTCACGACGCTCATCAGCCGCCCGAAGTCCAGCCCGTCGCCGCCGCCGGCGCCGCCGCCGGCGCCGCGCTCCGGCGGGTAGAGGTGGCCCTCGAGGCTGCCGTGCGGCATGAGCGGGAGGACGAGCGCGTGGAAGGTGGCCGTGCTGCAGGTGGTGATCACCCTGACGAGGTTCTTGTGCCGGGTTCGCCGGAGCACCTCGCACTCCCGCTTGAAGCTGCCGGAGACCTCGCCGCCGCCCTTCGGGTCGAGCACCTTCACGGCGACGCGCGCGCCGCCGCGGAGCGTCCCCTCGTAGACGCGCCCGAACCGCCCGGCGCCGATCAGGCTCGACTGGACGAAGCCGCCGGTGGCCTCGGCGAGCTCCCGGTACGATATCCTCGGGTGCTCCCTCTCCGCCGCCGCCTGGTAGTCCTCGACGTCGACGAGCCGGACCGACTGCCGCTTCGCTCTCGCCGCCGCCATCGACCGGCACACCACCGCGCACAGCATGGCGCACACGGCGGCGACGATGCCGACGACGGCGGGGAGCACCGCGCGGCGGTGGCGCGTGCGTCTCGCCGTCGCCGCCCCGCACGCGGCAATGCCGGGGACGTACCCGCATAGGCCGGGGTTGCCTCGGAACGCCGCCGCCGAGAGGTTCGCGAGCACGCCGGCGCCGCGCGGCACCGCGCCGGAGAAGTTGTTGCAGGAGAAGTTCGCGTCCCGTAGCGACGTCGACGCCTGCAGGGAGGACACAGGCAGCTCGCCGGAGAGCCGGTTGCGCGACACGTCGAGCACCTGCAGGAACGGGAGCGCCGCGACGGGCGCCGGGAGCGCGCCGCGCAGCGCGTTGCCCGACAGGTTGAGGTACTCGAGCGCGACGCAACCGCCGAGCTGCGCCGGGACCGCGCCGGCGAGCGCGTTCTCCGACAGGTCGAGCGCCAGGACCATGTCCATCTTGCCGAGCTCGAGGGGGAGAGGCCCCTCGAGGTGGTTGTTCGACAGGTTCAGGTACAGCTTGAGGCCGCTCATGGCGGCGACGCGCGGAGGGATCCGCCCCTGCAAGCCATTGTAGGAGAGGTCCAAGATCTCAAGGTTCAGGCAGTCGCCGAGGCTCGCTGGAACATCGCCGGAGAGGTGGTTGTGGTGCAGCATTAGCCGCCTCAGCTGCGTCAGGTTGGAGAACGTGTCCGGGATGGTGCCGGCGAGCCGGTTGCCGGAGAGGTCGACGAGGCCGAGGTGCGGCATCTCGCCGATGGATCGCGGGATCTCGCCGGCGAGGAGGTTGTTGGAGAGGTAAAGCCGCTCGAGCCGCCGCAGCCGCGACATCTCCGGCGGGATCGAGCCATTGAGCATGTTATTGGAGAGGTTGAGGTAGGTGAGGTTGACGAGGCCGGCGATGCTGGGCGGGATCGCGCCCGTGATGGCGTTGTCCTCGAGGTGGATTTGCCGGAACTCGCGCGAGAGCTCGCCGACGAACGCCGGGAGCTCGCCGCCGAGGTCGTTGCCGGCGAGCTCGAGCTCCTGCAAGCGCGTGCAATTCGTCAAGGAGCGGAAGAAGGGGGCGAGGTCGGTGTTGCCGCCATGGCTGGACAGGTTGTTGTACGAGAGGTAGAGATACTGGAGCCGCGGCAACCTGTCGAACACCTGCGGCGGCAGCTCGCCGGCGAGGTAGTTCGACTCGAAGTCGACCCACTCGAGCAAGGAGGAGTTCGACAGCGCCGGCGGGATCAGGCCGGAGAGGTCGTTCGACCAGAGGAGGAGGTAGCGGAGGCTGGGGAGGCGGCACTCGCCGGAGTACGGGATGTCGCCGGCGAGGGAGTTGTTGGCGAGGTCGACGTACTGCAGCGCGGTGCAGTTGCAGAACAGCGTCGCCGGGATGCCGCCGGAGAGGCGGTTGCCGCTGAGGTCGAGGAAGTAGAGCCGCCGGAGCAGCCCGATGCCGGCGGGGATGGCGCCCTCGAGGCGGTTGCCCGTCAGGCTCAGCTGCGTCAGCCTCGACAGCGACGCGAGCTCCGCCGGTATCTCGCCGGAGAAACCATTGTTCGAGAGATCAAGAACCGTGACGAACTCCAGCCGCCCCAGCGCCGGCGACACCACGCCGCGGAGCCCACGCCCGGCGAGCACCAGCTGCGTGACCCGCCGCCGCTCGCCGCCGCCGCACACCACGCCCGTCCAGTTGCAGAACTCCGGCGAGCGTCCCCAGTCGGCGAGAGCGACACCACCGGAATCGGCCGACACATTGGACAAGAAAGCGAGCAGCGCAGACCAGTCGTCGGCGACAGCGGCGGCCGCCATTACTGGTGGTGGTGCGTCGACGGCGACAGCGATCGGCACGAGGTAGCAGATGATGATTGGGATGAGGAGCAAGTTGGCCAT
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| CDS seq | ATGGCCAACTTGCTCCTCATCCCAATCATCATCTGCTACCTCGTGCCGATCGCTGTCGCCGTCGACGCACCACCACCAGTAATGGCGGCCGCCGCTGTCGCCGACGACTGGTCTGCGCTGCTCGCTTTCTTGTCCAATGTGTCGGCCGATTCCGGTGGTGTCGCTCTCGCCGACTGGGGACGCTCGCCGGAGTTCTGCAACTGGACGGGCGTGGTGTGCGGCGGCGGCGAGCGGCGGCGGGTCACGCAGCTGGTGCTCGCCGGGCGTGGGCTCCGCGGCGTGGTGTCGCCGGCGCTGGGGCGGCTGGAGTTCGTCACGGTTCTTGATCTCTCGAACAATGGTTTCTCCGGCGAGATACCGGCGGAGCTCGCGTCGCTGTCGAGGCTGACGCAGCTGAGCCTGACGGGCAACCGCCTCGAGGGCGCCATCCCCGCCGGCATCGGGCTGCTCCGGCGGCTCTACTTCCTCGACCTCAGCGGCAACCGCCTCTCCGGCGGCATCCCGGCGACGCTGTTCTGCAACTGCACCGCGCTGCAGTACGTCGACCTCGCCAACAACTCCCTCGCCGGCGACATCCCGTACTCCGGCGAGTGCCGCCTCCCCAGCCTCCGCTACCTCCTCCTCTGGTCGAACGACCTCTCCGGCCTGATCCCGCCGGCGCTGTCGAACTCCTCCTTGCTCGAGTGGGTCGACTTCGAGTCGAACTACCTCGCCGGCGAGCTGCCGCCGCAGGTGTTCGACAGGTTGCCGCGGCTCCAGTATCTCTACCTCTCGTACAACAACCTGTCCAGCCATGGCGGCAACACCGACCTCGCCCCCTTCTTCCGCTCCTTGACGAATTGCACGCGCTTGCAGGAGCTCGAGCTCGCCGGCAACGACCTCGGCGGCGAGCTCCCGGCGTTCGTCGGCGAGCTCTCGCGCGAGTTCCGGCAAATCCACCTCGAGGACAACGCCATCACGGGCGCGATCCCGCCCAGCATCGCCGGCCTCGTCAACCTCACCTACCTCAACCTCTCCAATAACATGCTCAATGGCTCGATCCCGCCGGAGATGTCGCGGCTGCGGCGGCTCGAGCGGCTTTACCTCTCCAACAACCTCCTCGCCGGCGAGATCCCGCGATCCATCGGCGAGATGCCGCACCTCGGCCTCGTCGACCTCTCCGGCAACCGGCTCGCCGGCACCATCCCGGACACGTTCTCCAACCTGACGCAGCTGAGGCGGCTAATGCTGCACCACAACCACCTCTCCGGCGATGTTCCAGCGAGCCTCGGCGACTGCCTGAACCTTGAGATCTTGGACCTCTCCTACAATGGCTTGCAGGGGCGGATCCCTCCGCGCGTCGCCGCCATGAGCGGCCTCAAGCTGTACCTGAACCTGTCGAACAACCACCTCGAGGGGCCTCTCCCCCTCGAGCTCGGCAAGATGGACATGGTCCTGGCGCTCGACCTGTCGGAGAACGCGCTCGCCGGCGCGGTCCCGGCGCAGCTCGGCGGTTGCGTCGCGCTCGAGTACCTCAACCTGTCGGGCAACGCGCTGCGCGGCGCGCTCCCGGCGCCCGTCGCGGCGCTCCCGTTCCTGCAGGTGCTCGACGTGTCGCGCAACCGGCTCTCCGGCGAGCTGCCTGTGTCCTCCCTGCAGGCGTCGACGTCGCTACGGGACGCGAACTTCTCCTGCAACAACTTCTCCGGCGCGGTGCCGCGCGGCGCCGGCGTGCTCGCGAACCTCTCGGCGGCGGCGTTCCGAGGCAACCCCGGCCTATGCGGCTTCGGCGTGATGATACTCGAGCTGATCACCGGGAAGAGGCCGACCGACGTCATCTTCCACGAGGGCCTCACGCTGCACGACTGGGTCAGGCGACACTACCCGCACGACGTCGCCGCCGTCGTCGCGCACGCGCCGTGGCGCCGGGAGGCGCCGTCGCCGATGTCGACGGCGGCGTCGCCGGCGGCGGCCGACGTGGCCGCCGTCGAGCTCATCGAGCTCGGGCTCGTGTGCACGCAGCACTCGCCGGCGCTGCGGCCGAGCATGGTGGACGTCTGCCACGAGATCACGTTGCTCAACGAGGCTATCAGGAGGCACGCCGCCGCCGCCGCCGCCATCGCCGCCGCCACCGACGAGGACGAGGACGACGACGACGGCAGGTCGTTGTCGACGACCAAGGACGACTCGCTGTTCTCCAATTAA
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| Protein seq | MANLLLIPIIICYLVPIAVAVDAPPPVMAAAAVADDWSALLAFLSNVSADSGGVALADWGRSPEFCNWTGVVCGGGERRRVTQLVLAGRGLRGVVSPALGRLEFVTVLDLSNNGFSGEIPAELASLSRLTQLSLTGNRLEGAIPAGIGLLRRLYFLDLSGNRLSGGIPATLFCNCTALQYVDLANNSLAGDIPYSGECRLPSLRYLLLWSNDLSGLIPPALSNSSLLEWVDFESNYLAGELPPQVFDRLPRLQYLYLSYNNLSSHGGNTDLAPFFRSLTNCTRLQELELAGNDLGGELPAFVGELSREFRQIHLEDNAITGAIPPSIAGLVNLTYLNLSNNMLNGSIPPEMSRLRRLERLYLSNNLLAGEIPRSIGEMPHLGLVDLSGNRLAGTIPDTFSNLTQLRRLMLHHNHLSGDVPASLGDCLNLEILDLSYNGLQGRIPPRVAAMSGLKLYLNLSNNHLEGPLPLELGKMDMVLALDLSENALAGAVPAQLGGCVALEYLNLSGNALRGALPAPVAALPFLQVLDVSRNRLSGELPVSSLQASTSLRDANFSCNNFSGAVPRGAGVLANLSAAAFRGNPGLCGFGVMILELITGKRPTDVIFHEGLTLHDWVRRHYPHDVAAVVAHAPWRREAPSPMSTAASPAAADVAAVELIELGLVCTQHSPALRPSMVDVCHEITLLNEAIRRHAAAAAAIAAATDEDEDDDDGRSLSTTKDDSLFSN |
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| Function | Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 [UniProtKB/Swiss-Prot:Q9ZUI0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0186300 | OsNip_06t0186300-00 | Chr06 | 4339307 | 4342791 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCCAACTTGCTCCTCATCCCAATCATCATCTGCTACCTCGTGCCGATCGCTGTCGCCGTCGACGCACCACCACCAGTAATGGCGGCCGCCGCTGTCGCCGACGACTGGTCTGCGCTGCTCGCTTTCTTGTCCAATGTGTCGGCCGATTCCGGTGGTGTCGCTCTCGCCGACTGGGGACGCTCGCCGGAGTTCTGCAACTGGACGGGCGTGGTGTGCGGCGGCGGCGAGCGGCGGCGGGTCACGCAGCTGGTGCTCGCCGGGCGTGGGCTCCGCGGCGTGGTGTCGCCGGCGCTGGGGCGGCTGGAGTTCGTCACGGTTCTTGATCTCTCGAACAATGGTTTCTCCGGCGAGATACCGGCGGAGCTCGCGTCGCTGTCGAGGCTGACGCAGCTGAGCCTGACGGGCAACCGCCTCGAGGGCGCCATCCCCGCCGGCATCGGGCTGCTCCGGCGGCTCTACTTCCTCGACCTCAGCGGCAACCGCCTCTCCGGCGGCATCCCGGCGACGCTGTTCTGCAACTGCACCGCGCTGCAGTACGTCGACCTCGCCAACAACTCCCTCGCCGGCGACATCCCGTACTCCGGCGAGTGCCGCCTCCCCAGCCTCCGCTACCTCCTCCTCTGGTCGAACGACCTCTCCGGCCTGATCCCGCCGGCGCTGTCGAACTCCTCCTTGCTCGAGTGGGTCGACTTCGAGTCGAACTACCTCGCCGGCGAGCTGCCGCCGCAGGTGTTCGACAGGTTGCCGCGGCTCCAGTATCTCTACCTCTCGTACAACAACCTGTCCAGCCATGGCGGCAACACCGACCTCGCCCCCTTCTTCCGCTCCTTGACGAATTGCACGCGCTTGCAGGAGCTCGAGCTCGCCGGCAACGACCTCGGCGGCGAGCTCCCGGCGTTCGTCGGCGAGCTCTCGCGCGAGTTCCGGCAAATCCACCTCGAGGACAACGCCATCACGGGCGCGATCCCGCCCAGCATCGCCGGCCTCGTCAACCTCACCTACCTCAACCTCTCCAATAACATGCTCAATGGCTCGATCCCGCCGGAGATGTCGCGGCTGCGGCGGCTCGAGCGGCTTTACCTCTCCAACAACCTCCTCGCCGGCGAGATCCCGCGATCCATCGGCGAGATGCCGCACCTCGGCCTCGTCGACCTCTCCGGCAACCGGCTCGCCGGCACCATCCCGGACACGTTCTCCAACCTGACGCAGCTGAGGCGGCTAATGCTGCACCACAACCACCTCTCCGGCGATGTTCCAGCGAGCCTCGGCGACTGCCTGAACCTTGAGATCTTGGACCTCTCCTACAATGGCTTGCAGGGGCGGATCCCTCCGCGCGTCGCCGCCATGAGCGGCCTCAAGCTGTACCTGAACCTGTCGAACAACCACCTCGAGGGGCCTCTCCCCCTCGAGCTCGGCAAGATGGACATGGTCCTGGCGCTCGACCTGTCGGAGAACGCGCTCGCCGGCGCGGTCCCGGCGCAGCTCGGCGGTTGCGTCGCGCTCGAGTACCTCAACCTGTCGGGCAACGCGCTGCGCGGCGCGCTCCCGGCGCCCGTCGCGGCGCTCCCGTTCCTGCAGGTGCTCGACGTGTCGCGCAACCGGCTCTCCGGCGAGCTGCCTGTGTCCTCCCTGCAGGCGTCGACGTCGCTACGGGACGCGAACTTCTCCTGCAACAACTTCTCCGGCGCGGTGCCGCGCGGCGCCGGCGTGCTCGCGAACCTCTCGGCGGCGGCGTTCCGAGGCAACCCCGGCCTATGCGGCTTCGGCGTGATGATACTCGAGCTGATCACCGGGAAGAGGCCGACCGACGTCATCTTCCACGAGGGCCTCACGCTGCACGACTGGGTCAGGCGACACTACCCGCACGACGTCGCCGCCGTCGTCGCGCACGCGCCGTGGCGCCGGGAGGCGCCGTCGCCGATGTCGACGGCGGCGTCGCCGGCGGCGGCCGACGTGGCCGCCGTCGAGCTCATCGAGCTCGGGCTCGTGTGCACGCAGCACTCGCCGGCGCTGCGGCCGAGCATGGTGGACGTCTGCCACGAGATCACGTTGCTCAACGAGGCTATCAGGAGGCACGCCGCCGCCGCCGCCGCCATCGCCGCCGCCACCGACGAGGACGAGGACGACGACGACGGCAGGTCGTTGTCGACGACCAAGGACGACTCGCTGTTCTCCAATTAA
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| Protein seq | MANLLLIPIIICYLVPIAVAVDAPPPVMAAAAVADDWSALLAFLSNVSADSGGVALADWGRSPEFCNWTGVVCGGGERRRVTQLVLAGRGLRGVVSPALGRLEFVTVLDLSNNGFSGEIPAELASLSRLTQLSLTGNRLEGAIPAGIGLLRRLYFLDLSGNRLSGGIPATLFCNCTALQYVDLANNSLAGDIPYSGECRLPSLRYLLLWSNDLSGLIPPALSNSSLLEWVDFESNYLAGELPPQVFDRLPRLQYLYLSYNNLSSHGGNTDLAPFFRSLTNCTRLQELELAGNDLGGELPAFVGELSREFRQIHLEDNAITGAIPPSIAGLVNLTYLNLSNNMLNGSIPPEMSRLRRLERLYLSNNLLAGEIPRSIGEMPHLGLVDLSGNRLAGTIPDTFSNLTQLRRLMLHHNHLSGDVPASLGDCLNLEILDLSYNGLQGRIPPRVAAMSGLKLYLNLSNNHLEGPLPLELGKMDMVLALDLSENALAGAVPAQLGGCVALEYLNLSGNALRGALPAPVAALPFLQVLDVSRNRLSGELPVSSLQASTSLRDANFSCNNFSGAVPRGAGVLANLSAAAFRGNPGLCGFGVMILELITGKRPTDVIFHEGLTLHDWVRRHYPHDVAAVVAHAPWRREAPSPMSTAASPAAADVAAVELIELGLVCTQHSPALRPSMVDVCHEITLLNEAIRRHAAAAAAIAAATDEDEDDDDGRSLSTTKDDSLFSN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.800982 | 0.438495 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0423200 | SBH | 0.049667 | 0.227852 | 0.272723 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g08710 | RBH | 0.396120 | 0.209060 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0186300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0006090 | SBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0005940 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0005910 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0006100 | SBH | 0.0 | 0.009462 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0005970 | SBH | 0.167369 | 1.661740 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0074200 | RBH | 0 | 1.230615 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0005860 | RBH | 0.0 | 0.124949 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0073700 | RBH | 0.004523 | 3.2209035 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0006160 | SBH | 0.0 | 0.038945 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0006020 | RBH | 0.0 | 6.891879 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0006030 | SBH | 0.0 | 1.514499 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0006060 | SBH | 0.0 | 0.023942 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0005910 | SBH | 0.0 | 0.847236 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G005780 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0006030 | RBH | 0.0 | 0.000000 | 0.0 |
