Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g0184000 | OGI:06011990 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:4192207-4194418 | ||||||||
| Gene Symbol | RHL1, OsbHLH115, bHLH115, OsRHL1, OsbHLH122 | ||||||||||
| DNA seq | TCATTGCGTCCCGCCGGCGCCGCCGTCCGCCTTTGCGTGCCGTGGGTCATCGCCGTTAGACATCGCCGCCGGCGAGGTCGGGCCGGCGGCATCGAGCATCGTCTGCGGCGGCGCGCCGGCGTGGCGGATGGACGGGCGGGAGAGGAGCGACGCCGATGAGGTCGCCGACGAGATGGCGGAGGCGAGGGAGATCGGCATCAGACAGAGCCCCTTCCCCTGCAGGTACTGCATCGCCGTGCCCATGTCCTCCTCCATCATCTTCGCCACCTGCTGCTCCGTCACCCGCATCCCACCACCGGTGCCACCTCCTCCTCCTCCTCCGCCGCCGCCGCCGCCCTCGCCGCCGGTGCCGCCCTTGCTCGCCTTGCCACCGCCGCCATTGCTGCTCCCGTTGCTGTTCCCCTGCACGGACGCACGACGTCGCATATCTCAGAACCGGAAACTACACGCAACGGCGGCAAAGGCTCGCCGTGTCGATGAACATTGGTTGCTTGCTTGCTTACCTCCGACGACATGCTCGCCACCAGCGGCGCCATGCCGGCGGCGCCGCCGAGCCGGCTCATGCTGAGAACCTGCGGTGTCAAAGGCAGTCACGATGGCATGTCTGATCGATCCTAGCTCACTGAGCTCAAACACACAGAATCGATTGATGATCACCTTGACTTGGAGCTGCAGGAACTTGACGTAGTCGATGATCTCGTCCAGCATCGACGCCTTGTCCGTCTGCAAGCAAAATCAAATCAAAGAACTCCATTCAATCACTTCATTTTCTTCATCAAGATGTCAAGAAAAACGATGACAAAATTGGGCACGAATGCGCCCATGTGCTCATTCACTGCGCTCCATTTCTATCAGTTGGACTGTTCTTTAGTTCAGAAAAAGGAAACAAAGAAAATTCTTCTTGACAATGCAATGACCATATATATGATTAATTCTACCAGAATGTAATATTTCAGAAGGGATGAGAGTTTTGGGATGTAACCTTGTTGGCGTTTGGGACTAGCTCCTGCAGCGATTTCATCCGCTCCGCTATCCTCTCCCTCCGAAGCTGAAAATAACATGAACAATACACAAAAAGTTGAGAAGAAAAATGGAAATGTTGCTCAAGTTCCATTTATTTTTTGGTTGAAACTTGAAAGAGGCAGTAATAATTGTAAGATGATTTCGTGAACAGTGACAGGTTTGACGTAGCTGATTTGATCTGTCAGATTTAAGCACGAGCCAGATCAAGCATTTTCTGCTGTCGTGAGTAAACATGTCTAGAATTCTACTAGTACTAATTTTAAATTTTTAATTAAGTTCATAGAAATATAGAATGCCAGAGAGGAGATTGAGTTGGTAGTGGGAAGAGAGTGGCAGGCAAGCATGCATACACGTTCGGCGATGCTGTGTGGGTCGGTGGCTTGCCCTCTCCTCGCGCGCACCCGCTGCTGCCGCGGCGGCGCCGTGCCACCGCCACCGGAGGAGGTGACCGGCGCCGTGCCTCCGCTCGCCGCCGGCCCTCCGAAGCTCTGCCCCGACATTGATCCTCCCTTGAAACGACGAAGAGGACAATCTTGATGTTTGAGTCGTAGAGATTAATTACAGTGGCAAGTTCTTGAGCGATCGGCTTGCTTACCTGGCCGAACGGCGGCTGCCCGGCGCCGCCGCTGCCGCCGTGCACGCCGAACCCGTTGAACAGCGCGTGCTCGCCTCCCTGCAAATGAAAGAGAAATCTCGTCGGAGAAGGAGGAGAAGATGGTGGTAAGGAAGGAGACGAGAGTTTCCAAGAACGTGGGAGCACGCACGGCGGCGGCATTGGGCGACTTGAAGCCGCCCTCCATCTCCTCCCGCGGCGGCACGTTCGTCCGGTCCGTGAACAGCGGCAGCGGCGAGAACGCGCCGCTCCCGTCCTCCTCGCCGCCGCCGGCCTGCCGGTGCAGCTCGCTCAGCTGCAGCATCACCGGCTTCTCTCCCCCGCCGCCGCCAGCCCCACCGATCTGGTGATGCCGGAGGCGGGACGCGAGCAGCGCCGACTCGTCGAACACCTGCGACGCCGCCGCCGCCGCTGCCGGATCGACCTCCCACGGCGACTTCCCCGCCGCGCCGCCGCCGCCGCCCCCCAGGTCGGCCCACGCCGACGGCAGCGTGGAGAGCATCTGGTCGAAGAAGTCATCCTGCGTCCCCTCGCCGCCGCCGCCGGCGACCGTGTCGCGGCTGCTCGGCTGCATGG
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| CDS seq | ATGCAGCCGAGCAGCCGCGACACGGTCGCCGGCGGCGGCGGCGAGGGGACGCAGGATGACTTCTTCGACCAGATGCTCTCCACGCTGCCGTCGGCGTGGGCCGACCTGGGGGGCGGCGGCGGCGGCGCGGCGGGGAAGTCGCCGTGGGAGGTCGATCCGGCAGCGGCGGCGGCGGCGTCGCAGGTGTTCGACGAGTCGGCGCTGCTCGCGTCCCGCCTCCGGCATCACCAGATCGGTGGGGCTGGCGGCGGCGGGGGAGAGAAGCCGGTGATGCTGCAGCTGAGCGAGCTGCACCGGCAGGCCGGCGGCGGCGAGGAGGACGGGAGCGGCGCGTTCTCGCCGCTGCCGCTGTTCACGGACCGGACGAACGTGCCGCCGCGGGAGGAGATGGAGGGCGGCTTCAAGTCGCCCAATGCCGCCGCCGGAGGCGAGCACGCGCTGTTCAACGGGTTCGGCGTGCACGGCGGCAGCGGCGGCGCCGGGCAGCCGCCGTTCGGCCAGGGAGGATCAATGTCGGGGCAGAGCTTCGGAGGGCCGGCGGCGAGCGGAGGCACGGCGCCGGTCACCTCCTCCGGTGGCGGTGGCACGGCGCCGCCGCGGCAGCAGCGGGTGCGCGCGAGGAGAGGGCAAGCCACCGACCCACACAGCATCGCCGAACGTCTTCGGAGGGAGAGGATAGCGGAGCGGATGAAATCGCTGCAGGAGCTAGTCCCAAACGCCAACAAGACGGACAAGGCGTCGATGCTGGACGAGATCATCGACTACGTCAAGTTCCTGCAGCTCCAAGTCAAGGTTCTCAGCATGAGCCGGCTCGGCGGCGCCGCCGGCATGGCGCCGCTGGTGGCGAGCATGTCGTCGGAGGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGGTGGCACCGGTGGTGGGATGCGGGTGACGGAGCAGCAGGTGGCGAAGATGATGGAGGAGGACATGGGCACGGCGATGCAGTACCTGCAGGGGAAGGGGCTCTGTCTGATGCCGATCTCCCTCGCCTCCGCCATCTCGTCGGCGACCTCATCGGCGTCGCTCCTCTCCCGCCCGTCCATCCGCCACGCCGGCGCGCCGCCGCAGACGATGCTCGATGCCGCCGGCCCGACCTCGCCGGCGGCGATGTCTAACGGCGATGACCCACGGCACGCAAAGGCGGACGGCGGCGCCGGCGGGACGCAATGA
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| Protein seq | MQPSSRDTVAGGGGEGTQDDFFDQMLSTLPSAWADLGGGGGGAAGKSPWEVDPAAAAAASQVFDESALLASRLRHHQIGGAGGGGGEKPVMLQLSELHRQAGGGEEDGSGAFSPLPLFTDRTNVPPREEMEGGFKSPNAAAGGEHALFNGFGVHGGSGGAGQPPFGQGGSMSGQSFGGPAASGGTAPVTSSGGGGTAPPRQQRVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAGMAPLVASMSSEGGGGGGGGGGGGTGGGMRVTEQQVAKMMEEDMGTAMQYLQGKGLCLMPISLASAISSATSSASLLSRPSIRHAGAPPQTMLDAAGPTSPAAMSNGDDPRHAKADGGAGGTQ |
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| Function | bHLH transcription factor RHL1 [UniProtKB/Swiss-Prot:D0PX88] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0184000 | OsNip_06t0184000-00 | Chr06 | 4192207 | 4194418 | - | RAP2018-11-26 | ||
| CDS seq | ATGCAGCCGAGCAGCCGCGACACGGTCGCCGGCGGCGGCGGCGAGGGGACGCAGGATGACTTCTTCGACCAGATGCTCTCCACGCTGCCGTCGGCGTGGGCCGACCTGGGGGGCGGCGGCGGCGGCGCGGCGGGGAAGTCGCCGTGGGAGGTCGATCCGGCAGCGGCGGCGGCGGCGTCGCAGGTGTTCGACGAGTCGGCGCTGCTCGCGTCCCGCCTCCGGCATCACCAGATCGGTGGGGCTGGCGGCGGCGGGGGAGAGAAGCCGGTGATGCTGCAGCTGAGCGAGCTGCACCGGCAGGCCGGCGGCGGCGAGGAGGACGGGAGCGGCGCGTTCTCGCCGCTGCCGCTGTTCACGGACCGGACGAACGTGCCGCCGCGGGAGGAGATGGAGGGCGGCTTCAAGTCGCCCAATGCCGCCGCCGGAGGCGAGCACGCGCTGTTCAACGGGTTCGGCGTGCACGGCGGCAGCGGCGGCGCCGGGCAGCCGCCGTTCGGCCAGGGAGGATCAATGTCGGGGCAGAGCTTCGGAGGGCCGGCGGCGAGCGGAGGCACGGCGCCGGTCACCTCCTCCGGTGGCGGTGGCACGGCGCCGCCGCGGCAGCAGCGGGTGCGCGCGAGGAGAGGGCAAGCCACCGACCCACACAGCATCGCCGAACGTCTTCGGAGGGAGAGGATAGCGGAGCGGATGAAATCGCTGCAGGAGCTAGTCCCAAACGCCAACAAGACGGACAAGGCGTCGATGCTGGACGAGATCATCGACTACGTCAAGTTCCTGCAGCTCCAAGTCAAGGTTCTCAGCATGAGCCGGCTCGGCGGCGCCGCCGGCATGGCGCCGCTGGTGGCGAGCATGTCGTCGGAGGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGGTGGCACCGGTGGTGGGATGCGGGTGACGGAGCAGCAGGTGGCGAAGATGATGGAGGAGGACATGGGCACGGCGATGCAGTACCTGCAGGGGAAGGGGCTCTGTCTGATGCCGATCTCCCTCGCCTCCGCCATCTCGTCGGCGACCTCATCGGCGTCGCTCCTCTCCCGCCCGTCCATCCGCCACGCCGGCGCGCCGCCGCAGACGATGCTCGATGCCGCCGGCCCGACCTCGCCGGCGGCGATGTCTAACGGCGATGACCCACGGCACGCAAAGGCGGACGGCGGCGCCGGCGGGACGCAATGA
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| Protein seq | MQPSSRDTVAGGGGEGTQDDFFDQMLSTLPSAWADLGGGGGGAAGKSPWEVDPAAAAAASQVFDESALLASRLRHHQIGGAGGGGGEKPVMLQLSELHRQAGGGEEDGSGAFSPLPLFTDRTNVPPREEMEGGFKSPNAAAGGEHALFNGFGVHGGSGGAGQPPFGQGGSMSGQSFGGPAASGGTAPVTSSGGGGTAPPRQQRVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAGMAPLVASMSSEGGGGGGGGGGGGTGGGMRVTEQQVAKMMEEDMGTAMQYLQGKGLCLMPISLASAISSATSSASLLSRPSIRHAGAPPQTMLDAAGPTSPAAMSNGDDPRHAKADGGAGGTQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0795800 | RBH | 0.000000 | 0.000000 | 1.223036 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g08500 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0184000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0005910 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0005750 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0005720 | RBH | 0.0 | 4.748857 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0005920 | RBH | 0.0 | 0.034249 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0005790 | RBH | 0.0 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0071700 | RBH | 0 | 0.0920795 | 0.0081035 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0005660 | RBH | 0.0 | 0.345084 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0070900 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0005980 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0005830 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0005830 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0005880 | RBH | 0.0 | 1.095918 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0005710 | RBH | 0.0 | 3.773634 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G005590 | RBH | 0.0 | 1.408435 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0005830 | RBH | 0.0 | 0.0 | 0.0 |
