Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g0181100 | OGI:06011690 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:4008139-4009941 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CCCGTGCTCTCTCCAACGGCGCACAGCGAGCGAAACCCCGCGCATTGGACGCGAATCCGCACCGAGCAGGAGGAGGAGGAGGAATTCCGAACTTATCCCCCCACCTCCACCACCACAACCGCCGCCCACCGCCGATTCCCAAATTCCCCGCGCCGCCGCCACCGCCGCCGCCGCCGGAGGAATTTGTTGCTGCTGCTGTTGTTTTGGCGAGTCCTGGAGGTGGTGGCGCAGTGGTGCGGTGTGGTGAGTTTGGTTGTGTTGGTGGTGGTGGCTTGCGTGGTGAGGCTGAGCCCTAGGGCGATGGCGGGGAGCAGGGGGGTGGGGATGGGAGTGGGGGATCCGAGTAGCCCGAGCGCGAGGGCTGGGGCGGCGGCGGAGGAGGAGGCGGGGGCGGGGAAGGTGAAGCTGCTGTGCAGCTTCGGGGGGCGGATCGCGCCGAGGCAAGGGGACGGGGCGCTGCGCTACGTCGGCGGGCAGATGCGGCTCATCTCCGTGCCGCGCGTCGCCTCGTTCGGGGAGCTCATGAGGAAGGTGGAGGCGGTGGACGACGCGGGGGGAGCCGGCGGCGGCGGCGGCGGCGGGGTGCTCGTCAAGTACCAGCTCCCCGGTGAGGACCTCGACTCGCTCATCTCCGTGTCCTGCACGGAGGACTACGAGAACATGATGGAGGAGTACGAGAAGCTGGCCGCCGCCGCGCCCGACGGCTCCGCCAAGCTCCGGGTGTTCCTCTTCCCGGCCTCCGGGAGCGAGGCGGCCGCCGCGGGGGCGTCCGGCTCCGGGTCGCACCTCGCTGCCGCCGTCGACGAGTCGGGGCAGCGCTACATCGACGCCATCAACTGCGTCTCCGCGGAGTCCGTCGCGGCCATGCGGCGGAAGGAGAGCGTCGCCAGCGCTGGGTCATCGGCGCACAACTCCGAGGCCTCCGAGCACGGCGGTGCCGTCGAAGGTATGTCGCCGCAGGCTGCCGTGCCGCCGCCTTCGCTTCCGCCGGAATATCTGTATTCAGGTGGGAACAAATACCATGGCGCCTTCCCGGACTCCTTGGGATTCAGTGCCGTGACAGCTTCATCTCCGGCGATGGGTATCCAGGCACAAAATCATATCATGGTTAGAACAGAGCCATTGCCGCCGCAGCCGCATCAAGTTGCCTCTTACGCGCCATCGCATCAGCCGCCACAAGTTGCTTCTTATGCGCCGCATCAACAACCACAAGTTGCCTCTTATGCACCACAGCAGCAGCAGCAGCAGCAGCAGCCTCAAGTTGCTTCATACATTCCACAGATGGCGCAGTCGTTCAGGGAGCCACAGCAAGTCCAATACATCAATGCGCAGCAATTGGGTGTGCATGGTGTGCCCCAATCTGTCAATTTTGTTCCTGTGCAAATGAGCCCATATATGCCCAGCATTCCGGTGACGAACTCCATGCCAACCTCTGCCGCTCAAGTCGGCACCATGAAGCCAGCTTCTCCAGCTTCAGAACCTGTTTTAGAGAACGTTCATAACACAAGGCCAATGCAAGCTACAGGTGATCAGAGTTACAGGGTGCTACAGCCACTGTCACAGCTTCCTCCTTTGCCTCCTGTGCATTTGCAGACTAGTGATGCACACAGATATGGCGTCCAGACAGTAATGACAAGTTCAGCGAGCACGCCGTTGGTGACAACCTCAGGTACAATTCCAATGGTGATTAGCTCGGCTACCATGCCTGCATTGAGGTATGATGATTGCACAATGTGCCAGAAAGCACTGCCTCATGCTCATTCGGACAACATGATCCAAGAGCAGGGCACTCCACATGGAGTG
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| CDS seq | ATGGCGGGGAGCAGGGGGGTGGGGATGGGAGTGGGGGATCCGAGTAGCCCGAGCGCGAGGGCTGGGGCGGCGGCGGAGGAGGAGGCGGGGGCGGGGAAGGTGAAGCTGCTGTGCAGCTTCGGGGGGCGGATCGCGCCGAGGCAAGGGGACGGGGCGCTGCGCTACGTCGGCGGGCAGATGCGGCTCATCTCCGTGCCGCGCGTCGCCTCGTTCGGGGAGCTCATGAGGAAGGTGGAGGCGGTGGACGACGCGGGGGGAGCCGGCGGCGGCGGCGGCGGCGGGGTGCTCGTCAAGTACCAGCTCCCCGGTGAGGACCTCGACTCGCTCATCTCCGTGTCCTGCACGGAGGACTACGAGAACATGATGGAGGAGTACGAGAAGCTGGCCGCCGCCGCGCCCGACGGCTCCGCCAAGCTCCGGGTGTTCCTCTTCCCGGCCTCCGGGAGCGAGGCGGCCGCCGCGGGGGCGTCCGGCTCCGGGTCGCACCTCGCTGCCGCCGTCGACGAGTCGGGGCAGCGCTACATCGACGCCATCAACTGCGTCTCCGCGGAGTCCGTCGCGGCCATGCGGCGGAAGGAGAGCGTCGCCAGCGCTGGGTCATCGGCGCACAACTCCGAGGCCTCCGAGCACGGCGGTGCCGTCGAAGGTATGTCGCCGCAGGCTGCCGTGCCGCCGCCTTCGCTTCCGCCGGAATATCTGTATTCAGGTGGGAACAAATACCATGGCGCCTTCCCGGACTCCTTGGGATTCAGTGCCGTGACAGCTTCATCTCCGGCGATGGGTATCCAGGCACAAAATCATATCATGGTTAGAACAGAGCCATTGCCGCCGCAGCCGCATCAAGTTGCCTCTTACGCGCCATCGCATCAGCCGCCACAAGTTGCTTCTTATGCGCCGCATCAACAACCACAAGTTGCCTCTTATGCACCACAGCAGCAGCAGCAGCAGCAGCAGCCTCAAGTTGCTTCATACATTCCACAGATGGCGCAGTCGTTCAGGGAGCCACAGCAAGTCCAATACATCAATGCGCAGCAATTGGGTGTGCATGGTGTGCCCCAATCTGTCAATTTTGTTCCTGTGCAAATGAGCCCATATATGCCCAGCATTCCGGTGACGAACTCCATGCCAACCTCTGCCGCTCAAGTCGGCACCATGAAGCCAGCTTCTCCAGCTTCAGAACCTGTTTTAGAGAACGTTCATAACACAAGGCCAATGCAAGCTACAGGTGATCAGAGTTACAGGGTGCTACAGCCACTGTCACAGCTTCCTCCTTTGCCTCCTGTGCATTTGCAGACTAGTGATGCACACAGATATGGCGTCCAGACAGTAATGACAAGTTCAGCGAGCACGCCGTTGGTGACAACCTCAGGTACAATTCCAATGGTGATTAGCTCGGCTACCATGCCTGCATTGAGGTATGATGATTGCACAATGTGCCAGAAAGCACTGCCTCATGCTCATTCGGACAACATGATCCAAGAGCAGGGCACTCCACATGGAGTG
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| Protein seq | MAGSRGVGMGVGDPSSPSARAGAAAEEEAGAGKVKLLCSFGGRIAPRQGDGALRYVGGQMRLISVPRVASFGELMRKVEAVDDAGGAGGGGGGGVLVKYQLPGEDLDSLISVSCTEDYENMMEEYEKLAAAAPDGSAKLRVFLFPASGSEAAAAGASGSGSHLAAAVDESGQRYIDAINCVSAESVAAMRRKESVASAGSSAHNSEASEHGGAVEGMSPQAAVPPPSLPPEYLYSGGNKYHGAFPDSLGFSAVTASSPAMGIQAQNHIMVRTEPLPPQPHQVASYAPSHQPPQVASYAPHQQPQVASYAPQQQQQQQQPQVASYIPQMAQSFREPQQVQYINAQQLGVHGVPQSVNFVPVQMSPYMPSIPVTNSMPTSAAQVGTMKPASPASEPVLENVHNTRPMQATGDQSYRVLQPLSQLPPLPPVHLQTSDAHRYGVQTVMTSSASTPLVTTSGTIPMVISSATMPALRYDDCTMCQKALPHAHSDNMIQEQGTPHGV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0181100 | OsNip_06t0181100-01 | Chr06 | 4008139 | 4009941 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCGGGGAGCAGGGGGGTGGGGATGGGAGTGGGGGATCCGAGTAGCCCGAGCGCGAGGGCTGGGGCGGCGGCGGAGGAGGAGGCGGGGGCGGGGAAGGTGAAGCTGCTGTGCAGCTTCGGGGGGCGGATCGCGCCGAGGCAAGGGGACGGGGCGCTGCGCTACGTCGGCGGGCAGATGCGGCTCATCTCCGTGCCGCGCGTCGCCTCGTTCGGGGAGCTCATGAGGAAGGTGGAGGCGGTGGACGACGCGGGGGGAGCCGGCGGCGGCGGCGGCGGCGGGGTGCTCGTCAAGTACCAGCTCCCCGGTGAGGACCTCGACTCGCTCATCTCCGTGTCCTGCACGGAGGACTACGAGAACATGATGGAGGAGTACGAGAAGCTGGCCGCCGCCGCGCCCGACGGCTCCGCCAAGCTCCGGGTGTTCCTCTTCCCGGCCTCCGGGAGCGAGGCGGCCGCCGCGGGGGCGTCCGGCTCCGGGTCGCACCTCGCTGCCGCCGTCGACGAGTCGGGGCAGCGCTACATCGACGCCATCAACTGCGTCTCCGCGGAGTCCGTCGCGGCCATGCGGCGGAAGGAGAGCGTCGCCAGCGCTGGGTCATCGGCGCACAACTCCGAGGCCTCCGAGCACGGCGGTGCCGTCGAAGGTATGTCGCCGCAGGCTGCCGTGCCGCCGCCTTCGCTTCCGCCGGAATATCTGTATTCAGGTGGGAACAAATACCATGGCGCCTTCCCGGACTCCTTGGGATTCAGTGCCGTGACAGCTTCATCTCCGGCGATGGGTATCCAGGCACAAAATCATATCATGGTTAGAACAGAGCCATTGCCGCCGCAGCCGCATCAAGTTGCCTCTTACGCGCCATCGCATCAGCCGCCACAAGTTGCTTCTTATGCGCCGCATCAACAACCACAAGTTGCCTCTTATGCACCACAGCAGCAGCAGCAGCAGCAGCAGCCTCAAGTTGCTTCATACATTCCACAGATGGCGCAGTCGTTCAGGGAGCCACAGCAAGTCCAATACATCAATGCGCAGCAATTGGGTGTGCATGGTGTGCCCCAATCTGTCAATTTTGTTCCTGTGCAAATGAGCCCATATATGCCCAGCATTCCGGTGACGAACTCCATGCCAACCTCTGCCGCTCAAGTCGGCACCATGAAGCCAGCTTCTCCAGCTTCAGAACCTGTTTTAGAGAACGTTCATAACACAAGGCCAATGCAAGCTACAGGTGATCAGAGTTACAGGGTGCTACAGCCACTGTCACAGCTTCCTCCTTTGCCTCCTGTGCATTTGCAGACTAGTGATGCACACAGATATGGCGTCCAGACAGTAATGACAAGTTCAGCGAGCACGCCGTTGGTGACAACCTCAGGTACAATTCCAATGGTGATTAGCTCGGCTACCATGCCTGCATTGAGGTATGATGATTGCACAATGTGCCAGAAAGCACTGCCTCATGCTCATTCGGACAACATGATCCAAGAGCAGGGCACTCCACATGGAGTG
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| Protein seq | MAGSRGVGMGVGDPSSPSARAGAAAEEEAGAGKVKLLCSFGGRIAPRQGDGALRYVGGQMRLISVPRVASFGELMRKVEAVDDAGGAGGGGGGGVLVKYQLPGEDLDSLISVSCTEDYENMMEEYEKLAAAAPDGSAKLRVFLFPASGSEAAAAGASGSGSHLAAAVDESGQRYIDAINCVSAESVAAMRRKESVASAGSSAHNSEASEHGGAVEGMSPQAAVPPPSLPPEYLYSGGNKYHGAFPDSLGFSAVTASSPAMGIQAQNHIMVRTEPLPPQPHQVASYAPSHQPPQVASYAPHQQPQVASYAPQQQQQQQQPQVASYIPQMAQSFREPQQVQYINAQQLGVHGVPQSVNFVPVQMSPYMPSIPVTNSMPTSAAQVGTMKPASPASEPVLENVHNTRPMQATGDQSYRVLQPLSQLPPLPPVHLQTSDAHRYGVQTVMTSSASTPLVTTSGTIPMVISSATMPALRYDDCTMCQKALPHAHSDNMIQEQGTPHGV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.496232 | 0.668580 | 2.181911 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g08280 | SBH | 1.415101 | 1.135373 | 0.927056 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0181100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0005730 | RBH | 0.218664 | 3.924531 | 3.637335 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0005580 | RBH | 0.118292 | 1.838086 | 2.005394 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0005540 | RBH | 0.386832 | 4.617348 | 10.490064 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0005750 | SBH | 0.032833 | 0.214140 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0005620 | SBH | 0.480373 | 5.734564 | 7.087661 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0069400 | RBH | 3.483513 | 12.76414 | 19.507701 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0005480 | SBH | 0.166977 | 0.258345 | 0.970402 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0068700 | RBH | 3.0588145 | 10.9053415 | 11.7595125 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0005810 | RBH | 0.076249 | 0.069805 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0005650 | RBH | 0.000000 | 4.858940 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0005660 | SBH | 1.626890 | 2.905850 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0005690 | SBH | 0.392414 | 0.494237 | 1.014274 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0005520 | SBH | 0.312632 | 4.382859 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G005420 | SBH | 0.307206 | 3.313775 | 1.430938 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0005660 | SBH | 1.327909 | 6.838922 | 4.575153 |
