Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g0166900 | OGI:06009840 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:3360524-3363523 | ||||||||
| Gene Symbol | RLCK199, OsRLCK199 | ||||||||||
| DNA seq | AAGCTGCGAGGCTGTTCTCCGCTGTGACGTCTCGTCTCTTCCTCCTCCTCAGGAAGTCCAGCGAGTCCACCTCCCTCTCCTGCTCCACCACCACCACCTCCTCCTTCCAAAGATTCCTTCTCTTCTTCTTCGTTTCAGGCGCTGCGCGTCTGCGGGATTTGGGGAGGGGAGCGGCGGCGGAGATGCACCCGAAGCTGTCGCGGTTCGCGCACAGGGTGCTCTGCTGCGGGAGGAAAGGCTCCGGGGAGGATTTGTAAGGATTTCTTCTTCTTTCTTTTTGTTTTTTACTCTTGACTGCTTGTTCTTGTGTTCTTGGGGCTTGTTGGGTTCGTGGTTGTGGGAGCGCGGGGGGTTTGGCGTGATTCGTGGTGGAGGATTTGGGAATTCTCCCCGATTTTGTGCGCTGGTCTATCGATTCTTATCCTGGGTGGGTTTGGTTTAGTTTGGTTAGATGAGACGGGATGAAACCTAGAGGCTAGAGATGATGTGCAGTCTGGTTGCTCCAGTGATTGGGTACTGGAAGTTGTCTGTTTGGTACTGAATTTGATAGGAAAAACGATAAATCTTGGTTTAGTTTTGGAACAATTCTGTAAAGGTAGTGGTTTTATAGCAGTGTAACTAGTGGAATTTTTGGGGAAACAGAGACAGTCTACTGTTTTAGACTGTCGAAATGTGTGATGTTCAGTATGGAATTCCTTTTGTAGCTCTCATATATGCTGTTTTCGAATCCTTTTGTGTGAATAATCGATTTTACAAAGTGAATGAAAATGAAATATGCTCCGATAATACTGTAGGATTAAATGCTATGGTAATTTGGCATGGTAGTTTTCTTTTTGATGCATCATCAGGATGTGTCAGTCAATTCGAGTGGGTACCATATCAGTTGAAGGGAAAGAAATAGTTTGAATTGTTACTTTACCTAACCGTGGTGCTAAAACGTGGTAGACTGGTATCTCATATTCTGTTTCATGGCTTCGATTTAACAGGAGTGATGAGGGGAGCGGATCGTTGAGGTGGGTGTTTTCATTGCGGGAGCTTCGGTCAGCTACAAATAGCTTCAACTATGATAACAAGATTGGAGAAGGACCATTCGGAAGTGTCTATTGGGGACAAGTTTGGGATGGTTCTCAGGTTTCTATTCTTGACATCTCAGTCGATTTGATCTACATGTCATGTCAAGAAATAGAATTTCAACTGTCTCCTTTAGATATCTTGCTTTGTAGTTGGCCCAGCCAGGAATCATCATTAATTTGCAGCGTTGGAAAATCTTATTGATAGCTGTCTCACTAAGTAACCAAACAACTATCAGCTAGAATTTTTTATTCGGTTGCAGAGCATTGATCTTTGATTGCATTATCATTAAGTAGGTAGGATATGTTGTCATAGGCAGGTCAACTTAGACAAAATTTGGAAGATGGACTGGCTACAGGTTTGCAGATCTGTATCTTGTACAATAAAAGAAGGCTCAACATATTCCCTGTCATGGCTGCAACTAAGTTGTATGTCTTTTAAAAGGACTGTTAACCGTAACCTACCACAATTTTGTAGCAGTTTGCCCGTCTGAAGATTCTTCTTCTATAACAAGGTTTCTTGATTATTTCAATTGCTAATGTTTTTTTATACAGATTGCTGTTAAGAAGTTGAAGTGCGCAAAGAATGGGACAGAAACAGAATTTGCTTCAGATGTTGAAATTCTGGGAAGAGTGAGGCACAAAAACCTCTTGAGTTTCCGTGGATATTGTGCTGATGGACCTGAACGCGTTCTGGTGTATGACTTCATGCCAAATTCAAGTCTTTATGCACATCTGCACGGAACACATTCTACAGAGTGCCTTCTTGACTGGCGGAGGAGAACATTTATTGCAATTGGTGCTGCTCGAGCTCTAGCGTTAGTAAAAGAAACCTCATCTTTGTTCATTACTGCACAGCATACATAATCTCTGCTTCTCAGTTTCTCTCCTTCTGGTAAGCTGTCACAGAAGAAACTCACTCATATGAGCTTCTCCACAGGTATCTTCACCACCACGCAACACCCCAGATAATCCATGGGAGCGTCAAGGCTACTAATGTGCTACTCGATTCAAATTTCCAGGCACATCTTGGTGACTTTGGTCTGATAAGGTTCATCCCAGATGGGGTGGATCATGATAAGATAATCAGTGAAAACCAACGTGGCTATCTTGCTCCTGAGTACATTATGTTTGGCAAACCTACAATAGGTTGTGATGTCTACAGCTTTGGCATAATACTGTTGGAGCTATCTAGTGGGAGAAGACCAGTGGAAAGGTCGGGCTCTGCCAAAATGTGTGGGGTTCGAAACTGGGTGCTCCCTTTGGCAAAAGATGGCAGATACGATGAAATTGTGGACTCCAAACTCAATGATAAGTATTCTGAATCTGAACTAAAAAGAGTAGTGTTGGTTGGTCTGGCTTGCACACACAGAGAACCTGAAAAGAGACCGACAATGCTCGAAGTTGTATCGATGCTGAAAGGTGAATCTAAAGAGATGCTTTCCAGGCTTGAAAATGATGAATTGTTCAGGCCAGACTCGACGGTGAGTTCCCATGGAATGTCAACACCAGAGGGGAGCTCGGACTGTGTGCCCAAGAATGATCAAGAATTGGCAGCGGCATGATGGATTAGTACCCTAGGAAATGTAGAGTCGCATTTTTTTTGTGGGATTGGTGCTTGGTCTGCTTGGTTTGGCATGATTCAAATGTACAGGCATTGTCATTTGTGAAGGTTTCTCCTCTTTTTGGAGAGAGGAAATTAGATGAATGATGAGTTAGCAGTTATACATGGTGCTTTTTTTGGCAAAGAATTATTATACATGGTGCTTTTTGTGTGCACTGGATAGAAGATCCATATACTTGGCCTGATGTTTGGGTATGATTGGTCATGTTGTCATATAAATTATTCTTTAATGCTGATATCTGGATGATTGAATTGTGTTTGTATCTTATGATTGAAACTTCTGCACAACACAGGAGTAAATACTGC
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| CDS seq | ATGCACCCGAAGCTGTCGCGGTTCGCGCACAGGGTGCTCTGCTGCGGGAGGAAAGGCTCCGGGGAGGATTTGAGTGATGAGGGGAGCGGATCGTTGAGGTGGGTGTTTTCATTGCGGGAGCTTCGGTCAGCTACAAATAGCTTCAACTATGATAACAAGATTGGAGAAGGACCATTCGGAAGTGTCTATTGGGGACAAGTTTGGGATGGTTCTCAGATTGCTGTTAAGAAGTTGAAGTGCGCAAAGAATGGGACAGAAACAGAATTTGCTTCAGATGTTGAAATTCTGGGAAGAGTGAGGCACAAAAACCTCTTGAGTTTCCGTGGATATTGTGCTGATGGACCTGAACGCGTTCTGGTGTATGACTTCATGCCAAATTCAAGTCTTTATGCACATCTGCACGGAACACATTCTACAGAGTGCCTTCTTGACTGGCGGAGGAGAACATTTATTGCAATTGGTGCTGCTCGAGCTCTAGCGTATCTTCACCACCACGCAACACCCCAGATAATCCATGGGAGCGTCAAGGCTACTAATGTGCTACTCGATTCAAATTTCCAGGCACATCTTGGTGACTTTGGTCTGATAAGGTTCATCCCAGATGGGGTGGATCATGATAAGATAATCAGTGAAAACCAACGTGGCTATCTTGCTCCTGAGTACATTATGTTTGGCAAACCTACAATAGGTTGTGATGTCTACAGCTTTGGCATAATACTGTTGGAGCTATCTAGTGGGAGAAGACCAGTGGAAAGGTCGGGCTCTGCCAAAATGTGTGGGGTTCGAAACTGGGTGCTCCCTTTGGCAAAAGATGGCAGATACGATGAAATTGTGGACTCCAAACTCAATGATAAGTATTCTGAATCTGAACTAAAAAGAGTAGTGTTGGTTGGTCTGGCTTGCACACACAGAGAACCTGAAAAGAGACCGACAATGCTCGAAGTTGTATCGATGCTGAAAGGTGAATCTAAAGAGATGCTTTCCAGGCTTGAAAATGATGAATTGTTCAGGCCAGACTCGACGGTGAGTTCCCATGGAATGTCAACACCAGAGGGGAGCTCGGACTGTGTGCCCAAGAATGATCAAGAATTGGCAGCGGCATGA
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| Protein seq | MHPKLSRFAHRVLCCGRKGSGEDLSDEGSGSLRWVFSLRELRSATNSFNYDNKIGEGPFGSVYWGQVWDGSQIAVKKLKCAKNGTETEFASDVEILGRVRHKNLLSFRGYCADGPERVLVYDFMPNSSLYAHLHGTHSTECLLDWRRRTFIAIGAARALAYLHHHATPQIIHGSVKATNVLLDSNFQAHLGDFGLIRFIPDGVDHDKIISENQRGYLAPEYIMFGKPTIGCDVYSFGIILLELSSGRRPVERSGSAKMCGVRNWVLPLAKDGRYDEIVDSKLNDKYSESELKRVVLVGLACTHREPEKRPTMLEVVSMLKGESKEMLSRLENDELFRPDSTVSSHGMSTPEGSSDCVPKNDQELAAA |
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| Function | PTI1-like tyrosine-protein kinase At3g15890 [UniProtKB/Swiss-Prot:Q9LSC2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0166900 | OsNip_06t0166900-01 | Chr06 | 3360524 | 3363523 | + | RAP2018-11-26 | ||
| CDS seq | ATGCACCCGAAGCTGTCGCGGTTCGCGCACAGGGTGCTCTGCTGCGGGAGGAAAGGCTCCGGGGAGGATTTGAGTGATGAGGGGAGCGGATCGTTGAGGTGGGTGTTTTCATTGCGGGAGCTTCGGTCAGCTACAAATAGCTTCAACTATGATAACAAGATTGGAGAAGGACCATTCGGAAGTGTCTATTGGGGACAAGTTTGGGATGGTTCTCAGATTGCTGTTAAGAAGTTGAAGTGCGCAAAGAATGGGACAGAAACAGAATTTGCTTCAGATGTTGAAATTCTGGGAAGAGTGAGGCACAAAAACCTCTTGAGTTTCCGTGGATATTGTGCTGATGGACCTGAACGCGTTCTGGTGTATGACTTCATGCCAAATTCAAGTCTTTATGCACATCTGCACGGAACACATTCTACAGAGTGCCTTCTTGACTGGCGGAGGAGAACATTTATTGCAATTGGTGCTGCTCGAGCTCTAGCGTATCTTCACCACCACGCAACACCCCAGATAATCCATGGGAGCGTCAAGGCTACTAATGTGCTACTCGATTCAAATTTCCAGGCACATCTTGGTGACTTTGGTCTGATAAGGTTCATCCCAGATGGGGTGGATCATGATAAGATAATCAGTGAAAACCAACGTGGCTATCTTGCTCCTGAGTACATTATGTTTGGCAAACCTACAATAGGTTGTGATGTCTACAGCTTTGGCATAATACTGTTGGAGCTATCTAGTGGGAGAAGACCAGTGGAAAGGTCGGGCTCTGCCAAAATGTGTGGGGTTCGAAACTGGGTGCTCCCTTTGGCAAAAGATGGCAGATACGATGAAATTGTGGACTCCAAACTCAATGATAAGTATTCTGAATCTGAACTAAAAAGAGTAGTGTTGGTTGGTCTGGCTTGCACACACAGAGAACCTGAAAAGAGACCGACAATGCTCGAAGTTGTATCGATGCTGAAAGGTGAATCTAAAGAGATGCTTTCCAGGCTTGAAAATGATGAATTGTTCAGGCCAGACTCGACGGTGAGTTCCCATGGAATGTCAACACCAGAGGGGAGCTCGGACTGTGTGCCCAAGAATGATCAAGAATTGGCAGCGGCATGA
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| Protein seq | MHPKLSRFAHRVLCCGRKGSGEDLSDEGSGSLRWVFSLRELRSATNSFNYDNKIGEGPFGSVYWGQVWDGSQIAVKKLKCAKNGTETEFASDVEILGRVRHKNLLSFRGYCADGPERVLVYDFMPNSSLYAHLHGTHSTECLLDWRRRTFIAIGAARALAYLHHHATPQIIHGSVKATNVLLDSNFQAHLGDFGLIRFIPDGVDHDKIISENQRGYLAPEYIMFGKPTIGCDVYSFGIILLELSSGRRPVERSGSAKMCGVRNWVLPLAKDGRYDEIVDSKLNDKYSESELKRVVLVGLACTHREPEKRPTMLEVVSMLKGESKEMLSRLENDELFRPDSTVSSHGMSTPEGSSDCVPKNDQELAAA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.199168 | 1.617944 | 2.551535 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g07070 | RBH | 0.810940 | 1.088202 | 0.656815 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0166900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0004910 | RBH | 0.230134 | 19.841440 | 4.412469 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0004820 | RBH | 0.155621 | 1.628418 | 2.039071 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0004760 | RBH | 0.765256 | 18.838118 | 4.302206 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0004950 | RBH | 0.101121 | 0.397795 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0004840 | RBH | 3.554524 | 10.194420 | 9.910102 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0058400 | RBH | 6.298302 | 27.2385865 | 42.232342 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0004700 | RBH | 0.222365 | 1.507243 | 0.730071 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0058100 | RBH | 10.328092 | 34.2378295 | 8.1921025 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0004950 | RBH | 0.050178 | 0.294145 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0004800 | RBH | 0.291726 | 12.759244 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0004810 | RBH | 0.000000 | 9.191725 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0004840 | RBH | 0.000000 | 0.000000 | 0.348591 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0004710 | RBH | 0.205533 | 2.199141 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G004590 | RBH | 0.559602 | 2.518091 | 1.273538 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0004870 | RBH | 0.554598 | 16.657293 | 5.117826 |
