Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g0165600 | OGI:06009690 | 13/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:3310919-3311822 | ||||||||
| Gene Symbol | DREB1D, OsDREB1D, CBF4, ERF116, OsERF#116, OsERF116, AP2/EREBP#054, AP2/EREBP54, OsCbf1, OsCBF1 | ||||||||||
| DNA seq | ACTGCTTGAGACGTCGCACACGTCATGGAGAAGAACACCGCCGCCAGCGGGCAATTGATGACCTCCTCCGCGGAGGCGACGCCGTCGTCGCCGAAGCGGCCGGCGGGGCGAACCAAGTTCCAGGAGACGAGGCACCTAGTGTTCCGTGGGGTGCGATGGCGTGGGTGCGCGGGGCGGTGGGTGTGCAAGGTGCGTGTCCCGGGCAGCCGCGGTGACCGTTTCTGGATAGGCACGTCTGACACCGCCGAGGAGACCGCGCGCACGCACGACGCCGCCATGCTCGCCTTGTGCGGGGCCTCCGCCAGCCTCAACTTCGCCGACTCTGCCTGGCTGCTCCACGTCCCGCGCGCCCCCGTCGTCTCCGGACTCCGGCCACCAGCTGCCCGATGTGCAACGCGCTGCCTGCAAGGCCATCGCCGAGTTCCAGCGCCGGGCCGGGGGAGCACCGCCACTGCCACTGCCACCTCCGGCGATGCTGCATCGACCGCTCCTCCGTCGGCACCCGTTCTGTCAGCCAAACAATGCGAATTCATCTTTCTTTCTTCACTAGATTGTTGGATGTTAATGTCAAAGCTTATCAGCAGTAGCAGAGCAAAAGGATCGTTGTGCCTGCGAAAAAATCCCATTTCATTTTGCATGGTTACAAATTCTTACACTGCTCTTTTGCTCGAATACATTATATTGCAGATGAATTCAATGATCGTTTTAATCCACGAATTATCAAAATATCAAGTCTTTCTGCTACTAACCATGATAACACACCACCTTTTTCAATGGAGGAGGTAGGCGCGGACGCCCTCGCCATCATCGTCGATGTCGCCACTGATGACGAGGTCCGCGCCGCTCACCAGCTCGCACGCCTCGTCGTCGTCCATGCTCGCCACCTCGGTCCAGCAGCTGAACC
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| CDS seq | ATGGAGAAGAACACCGCCGCCAGCGGGCAATTGATGACCTCCTCCGCGGAGGCGACGCCGTCGTCGCCGAAGCGGCCGGCGGGGCGAACCAAGTTCCAGGAGACGAGGCACCTAGTGTTCCGTGGGGTGCGATGGCGTGGGTGCGCGGGGCGGTGGGTGTGCAAGGTGCGTGTCCCGGGCAGCCGCGGTGACCGTTTCTGGATAGGCACGTCTGACACCGCCGAGGAGACCGCGCGCACGCACGACGCCGCCATGCTCGCCTTGTGCGGGGCCTCCGCCAGCCTCAACTTCGCCGACTCTGCCTGGCTGCTCCACGTCCCGCGCGCCCCCGTCGTCTCCGGACTCCGGCCACCAGCTGCCCGATGTGCAACGCGCTGCCTGCAAGGCCATCGCCGAGTTCCAGCGCCGGGCCGGGGGAGCACCGCCACTGCCACTGCCACCTCCGGCGATGCTGCATCGACCGCTCCTCCGTCGGCACCCGTTCTGTCAGCCAAACAATGCGAATTCATCTTTCTTTCTTCACTAGATTGTTGGATGTTAATGTCAAAGCTTATCAGCAGTAGCAGAGCAAAAGGATCGTTGTGCCTGCGAAAAAATCCCATTTCATTTTGCATGGTTACAAATTCTTACACTGCTCTTTTGCTCGAATACATTATATTGCAGATGAATTCAATGATCGTTTTAATCCACGAATTATCAAAATATCAAGTCTTTCTGCTACTAACCATGATAACACACCACCTTTTTCAATGGAGGAGGTAG
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| Protein seq | MEKNTAASGQLMTSSAEATPSSPKRPAGRTKFQETRHLVFRGVRWRGCAGRWVCKVRVPGSRGDRFWIGTSDTAEETARTHDAAMLALCGASASLNFADSAWLLHVPRAPVVSGLRPPAARCATRCLQGHRRVPAPGRGSTATATATSGDAASTAPPSAPVLSAKQCEFIFLSSLDCWMLMSKLISSSRAKGSLCLRKNPISFCMVTNSYTALLLEYIILQMNSMIVLIHELSKYQVFLLLTMITHHLFQWRR |
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| Function | Dehydration-responsive element-binding protein 1D [UniProtKB/Swiss-Prot:Q6J1A5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0165600 | OsNip_06t0165600-01 | Chr06 | 3310919 | 3311822 | + | RAP2018-11-26 | ||
| CDS seq | ATGGAGAAGAACACCGCCGCCAGCGGGCAATTGATGACCTCCTCCGCGGAGGCGACGCCGTCGTCGCCGAAGCGGCCGGCGGGGCGAACCAAGTTCCAGGAGACGAGGCACCTAGTGTTCCGTGGGGTGCGATGGCGTGGGTGCGCGGGGCGGTGGGTGTGCAAGGTGCGTGTCCCGGGCAGCCGCGGTGACCGTTTCTGGATAGGCACGTCTGACACCGCCGAGGAGACCGCGCGCACGCACGACGCCGCCATGCTCGCCTTGTGCGGGGCCTCCGCCAGCCTCAACTTCGCCGACTCTGCCTGGCTGCTCCACGTCCCGCGCGCCCCCGTCGTCTCCGGACTCCGGCCACCAGCTGCCCGATGTGCAACGCGCTGCCTGCAAGGCCATCGCCGAGTTCCAGCGCCGGGCCGGGGGAGCACCGCCACTGCCACTGCCACCTCCGGCGATGCTGCATCGACCGCTCCTCCGTCGGCACCCGTTCTGTCAGCCAAACAATGCGAATTCATCTTTCTTTCTTCACTAGATTGTTGGATGTTAATGTCAAAGCTTATCAGCAGTAGCAGAGCAAAAGGATCGTTGTGCCTGCGAAAAAATCCCATTTCATTTTGCATGGTTACAAATTCTTACACTGCTCTTTTGCTCGAATACATTATATTGCAGATGAATTCAATGATCGTTTTAATCCACGAATTATCAAAATATCAAGTCTTTCTGCTACTAACCATGATAACACACCACCTTTTTCAATGGAGGAGGTAG
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| Protein seq | MEKNTAASGQLMTSSAEATPSSPKRPAGRTKFQETRHLVFRGVRWRGCAGRWVCKVRVPGSRGDRFWIGTSDTAEETARTHDAAMLALCGASASLNFADSAWLLHVPRAPVVSGLRPPAARCATRCLQGHRRVPAPGRGSTATATATSGDAASTAPPSAPVLSAKQCEFIFLSSLDCWMLMSKLISSSRAKGSLCLRKNPISFCMVTNSYTALLLEYIILQMNSMIVLIHELSKYQVFLLLTMITHHLFQWRR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g06970 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0165600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0001900 | SBH | 0.0 | 2.513538 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0001820 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0001770 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0004870 | RBH | 0.0 | 0.092181 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0004760 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0057300 | RBH | 0.0938755 | 0.526686 | 0.2582305 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0001770 | SBH | 0.0 | 0.0 | 0.122809 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0057100 | RBH | 0.06141 | 0.126292 | 0.961195 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0004880 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0004720 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0004730 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0004760 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0004630 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G004510 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0004790 | RBH | 0.0 | 0.0 | 0.0 |
