Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g0125600 | OGI:06003820 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:1377416-1379454 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTACTCTTTGGACCTTCTCCAGCGACGATCTCTCGCCGCCACCAGCCACCCGCCACCCGCCGCCGCTCGCCGCCCGCCGCCGACGGCGCGGCCGCGCTCTTCTCCGGTCCACTACCGTCAGTGAGCTCAGCATCCTCTCGAGCCGCCGGCGTCGTCGTGTCTGAAACGACTAGCACGGTGCCTTGTGTTTCCCATGTTCCATGGAGGAGGCGAAGCAGCTGCACGCGCGCGCGCTCCGCCGCGGGGTGCGCCTGCTGCAGCCGCTGCTCCTCCGCGTCCTCGCCGCCGGCGACCACCGCTACGCCGCGCGCCTCCTCGAATCCTACCCGGCGCCTCCTTCGGCGCCGCTCCACAACCGCCTCCTCCATGCTCTCGCCTCCCTCCACCGCCCCCACCCCCTCCTCCTCCCCTTCTTCTCCCGCCTCCATCGCCTTCGCCTCCTCACTCCGCTGTCATTCACTCTCCTCTTCTCCTCCTCCTCCTCGTCCGCCTCCTCCTCCACCCCCTTCTTCCTCTGCTCCCACTCCCTGCTTATCAAATTAGGCCACTTCGCATCAAGCGATCCCTTCCTCTCCTCCGCGCTTGTCTCATTCTACGCCAAGAGCAAGCTCCTGGTTGAAGCCAGGAAGGTGTTCGACGAATTGACGTGCAGGGACACGGCCGTGTACAATGCGCTTCTTTCGGCCTACGCGAAAGGCGGCCTCGTCGATTCGGCAGAGAAGCTGTTCGAGGAAATGCCAGATAGGAATGTGGTTTCCTGGACTGCGATGGTGTCTGGGTACGCGCAGAACGGTCGGCATGAGGAAGCGGTGGAGACGTTCTTGGAGATGTGGGAGAGGGCAGGGGTACAACCGAATGAATTGACAGTGAGCAGTGTGCTGCCTGCATGCGCAGCAGTTGGGGCGATGGAGCTTGGGAGGAAGGTGGAGGAGTATGCGAGGGGAAAAGGCCTCCTGAGGAATGTGTACGTGGCTAATGCACTACTGGAGATGTATTCCAAGTGTGGCAGCATTCGACAAGCTTGGCAGGTGTTTCAGGGTATCGGTCGTCAGCAGGATCTCTGTTCTTGGAACTCTATGATCATGGCATTTGCTGTGCATGGCCTGTGGAGGGAGGCCCTTGCCTTGTTCTATAAGTTGCGGGTGAGGATTTCTTGCTTGAATAGTCTTGTGTTCTTAGTAGTCACACTAATTCAGAGCATTTACATGAAATTTGGTTGCCATGACTTCACTTGGCACTTGGCAGGTGAAAAGCAAACTTGTTTTAGCGTAGAATTAGCAGACCATATAGCCAACTATAACAGTTCAAGAGCCATCCACATTTTTTTATGTTGAAGCTAGAAACTGATTTCGTGTGTTTAGATGGCAGGGGTCAAACCAGATGGTATTACTTTTGTTGGGGTCATCTTGGCTTGTACCCATGGAGGTTTGGTGAATGAAGGCAAGCTATTCTTTGACTCGATGGAAGCAGAGTTTAGTCTGAAACCGAGAATTGAGCACTATGGCTGCATGGTTGACCTTCTCGGGCGTGCTGGTCTCCTGATTGAATCATACAGTCTGATTGCGAGCATGCCAGTGGAGCCTGACGCTGTCATCTGGGGGGCCTTGCTTGGTGCTTGCAGCTTCCATGGCAATGTAGAACTAGCAGAATTAGCAATGGACAAGCTCATCCACCTTGAGCCACAAAACACGGCAAACCTAGTGATCCTTTCAAACATATATGCGTCATCTGGCAAATGGGATGGTGTTGCCCAAGTATGGAAGTTACTAAAGGAGAAAGACCACAAGAAATCAGCTGGGTACAGCTTCATTGAGTTAGATGGTACGATGCATAAGTTCCTTGTTGAGGATAAGTCACATCCAAGATTTGAGGAAGTATACAATACCCTTAATAGTGTCACAATGACCATGAAGCTGGTTGGCTTGGAAAACCTGGAAGAATTGAAAGGCTAGGTTCTCTGTCAGTCTTTGGTGTAGCCTGTAAGACACCAAGCAATGGGAATAAAACGTGACCAAGTAGTACAAGATTTCTTGTGAACT
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| CDS seq | ATGGAGGAGGCGAAGCAGCTGCACGCGCGCGCGCTCCGCCGCGGGGTGCGCCTGCTGCAGCCGCTGCTCCTCCGCGTCCTCGCCGCCGGCGACCACCGCTACGCCGCGCGCCTCCTCGAATCCTACCCGGCGCCTCCTTCGGCGCCGCTCCACAACCGCCTCCTCCATGCTCTCGCCTCCCTCCACCGCCCCCACCCCCTCCTCCTCCCCTTCTTCTCCCGCCTCCATCGCCTTCGCCTCCTCACTCCGCTGTCATTCACTCTCCTCTTCTCCTCCTCCTCCTCGTCCGCCTCCTCCTCCACCCCCTTCTTCCTCTGCTCCCACTCCCTGCTTATCAAATTAGGCCACTTCGCATCAAGCGATCCCTTCCTCTCCTCCGCGCTTGTCTCATTCTACGCCAAGAGCAAGCTCCTGGTTGAAGCCAGGAAGGTGTTCGACGAATTGACGTGCAGGGACACGGCCGTGTACAATGCGCTTCTTTCGGCCTACGCGAAAGGCGGCCTCGTCGATTCGGCAGAGAAGCTGTTCGAGGAAATGCCAGATAGGAATGTGGTTTCCTGGACTGCGATGGTGTCTGGGTACGCGCAGAACGGTCGGCATGAGGAAGCGGTGGAGACGTTCTTGGAGATGTGGGAGAGGGCAGGGGTACAACCGAATGAATTGACAGTGAGCAGTGTGCTGCCTGCATGCGCAGCAGTTGGGGCGATGGAGCTTGGGAGGAAGGTGGAGGAGTATGCGAGGGGAAAAGGCCTCCTGAGGAATGTGTACGTGGCTAATGCACTACTGGAGATGTATTCCAAGTGTGGCAGCATTCGACAAGCTTGGCAGGTGTTTCAGGGTATCGGTCGTCAGCAGGATCTCTGTTCTTGGAACTCTATGATCATGGCATTTGCTGTGCATGGCCTGTGGAGGGAGGCCCTTGCCTTGTTCTATAAGTTGCGGGGGTCAAACCAGATGGTATTACTTTTGTTGGGGTCATCTTGGCTTGTACCCATGGAGGTTTGGTGA
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| Protein seq | MEEAKQLHARALRRGVRLLQPLLLRVLAAGDHRYAARLLESYPAPPSAPLHNRLLHALASLHRPHPLLLPFFSRLHRLRLLTPLSFTLLFSSSSSSASSSTPFFLCSHSLLIKLGHFASSDPFLSSALVSFYAKSKLLVEARKVFDELTCRDTAVYNALLSAYAKGGLVDSAEKLFEEMPDRNVVSWTAMVSGYAQNGRHEEAVETFLEMWERAGVQPNELTVSSVLPACAAVGAMELGRKVEEYARGKGLLRNVYVANALLEMYSKCGSIRQAWQVFQGIGRQQDLCSWNSMIMAFAVHGLWREALALFYKLRGSNQMVLLLLGSSWLVPMEVW |
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| Function | Pentatricopeptide repeat-containing protein At5g08510 [UniProtKB/Swiss-Prot:Q9FNN7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0125600 | OsNip_06t0125600-01 | Chr06 | 1377416 | 1379454 | + | RAP2018-11-26 | ||
| CDS seq | ATGGAGGAGGCGAAGCAGCTGCACGCGCGCGCGCTCCGCCGCGGGGTGCGCCTGCTGCAGCCGCTGCTCCTCCGCGTCCTCGCCGCCGGCGACCACCGCTACGCCGCGCGCCTCCTCGAATCCTACCCGGCGCCTCCTTCGGCGCCGCTCCACAACCGCCTCCTCCATGCTCTCGCCTCCCTCCACCGCCCCCACCCCCTCCTCCTCCCCTTCTTCTCCCGCCTCCATCGCCTTCGCCTCCTCACTCCGCTGTCATTCACTCTCCTCTTCTCCTCCTCCTCCTCGTCCGCCTCCTCCTCCACCCCCTTCTTCCTCTGCTCCCACTCCCTGCTTATCAAATTAGGCCACTTCGCATCAAGCGATCCCTTCCTCTCCTCCGCGCTTGTCTCATTCTACGCCAAGAGCAAGCTCCTGGTTGAAGCCAGGAAGGTGTTCGACGAATTGACGTGCAGGGACACGGCCGTGTACAATGCGCTTCTTTCGGCCTACGCGAAAGGCGGCCTCGTCGATTCGGCAGAGAAGCTGTTCGAGGAAATGCCAGATAGGAATGTGGTTTCCTGGACTGCGATGGTGTCTGGGTACGCGCAGAACGGTCGGCATGAGGAAGCGGTGGAGACGTTCTTGGAGATGTGGGAGAGGGCAGGGGTACAACCGAATGAATTGACAGTGAGCAGTGTGCTGCCTGCATGCGCAGCAGTTGGGGCGATGGAGCTTGGGAGGAAGGTGGAGGAGTATGCGAGGGGAAAAGGCCTCCTGAGGAATGTGTACGTGGCTAATGCACTACTGGAGATGTATTCCAAGTGTGGCAGCATTCGACAAGCTTGGCAGGTGTTTCAGGGTATCGGTCGTCAGCAGGATCTCTGTTCTTGGAACTCTATGATCATGGCATTTGCTGTGCATGGCCTGTGGAGGGAGGCCCTTGCCTTGTTCTATAAGTTGCGGGGGTCAAACCAGATGGTATTACTTTTGTTGGGGTCATCTTGGCTTGTACCCATGGAGGTTTGGTGA
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| Protein seq | MEEAKQLHARALRRGVRLLQPLLLRVLAAGDHRYAARLLESYPAPPSAPLHNRLLHALASLHRPHPLLLPFFSRLHRLRLLTPLSFTLLFSSSSSSASSSTPFFLCSHSLLIKLGHFASSDPFLSSALVSFYAKSKLLVEARKVFDELTCRDTAVYNALLSAYAKGGLVDSAEKLFEEMPDRNVVSWTAMVSGYAQNGRHEEAVETFLEMWERAGVQPNELTVSSVLPACAAVGAMELGRKVEEYARGKGLLRNVYVANALLEMYSKCGSIRQAWQVFQGIGRQQDLCSWNSMIMAFAVHGLWREALALFYKLRGSNQMVLLLLGSSWLVPMEVW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.279816 | 1.297466 | 1.212886 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0125300 | RBH | 0.656702 | 0.362883 | 0.429545 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g03570 | RBH | 1.673069 | 0.869298 | 0.337354 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0125600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0001820 | RBH | 0.000000 | 4.261915 | 2.232937 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0001740 | RBH | 0.000000 | 2.917238 | 0.604350 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0001680 | RBH | 0.895384 | 2.452652 | 4.447462 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0001690 | RBH | 0.118148 | 0.064892 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0001700 | RBH | 2.175522 | 1.863060 | 3.679252 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0021700 | RBH | 2.493486 | 3.811182 | 0.989352 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0001690 | RBH | 0.146475 | 0.000000 | 0.514850 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0022300 | RBH | 2.004547 | 4.0729045 | 4.0374525 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0001780 | RBH | 0.172294 | 0.133231 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0001660 | RBH | 0.168288 | 2.720055 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0001640 | RBH | 2.594416 | 6.354328 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0001670 | RBH | 0.639764 | 0.121585 | 0.594857 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0001520 | RBH | 0.416463 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G001610 | RBH | 0.435613 | 1.508637 | 1.138994 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0001750 | RBH | 0.0 | 0.000000 | 2.612357 |
