Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g0121400 | OGI:06003030 | 11/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:1132265-1132893 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CCATGGCGAGCAGCCACCCATTTCCAAGCTGGTGGGGCGCCAAGCACTACATCATGGCGGCCATCGCCGGAACCCTCGCCGCCAGCGCCATCGTCATCGTCACCTCCGTCGTCCTCAGCCCGACGCGGATATCCTTCTCGGTCACCGGCGGCGGCGCGTCCATCAGCCGTTCCGCCGGCGGCCAGGCGTTTCTCCTCAACCTCACCATCGCCGCCGACAACCCCAGCCACCGGGCCGGGGTGCAGTACCTCGCCTTCGCGGTGAGCTTGCAGCAGTTCACCGCGAGGAACAGGATGGAGTCGGTGGAGGCGACGGTCCAAGATGGCGTCCCGTTCTACCAGCCGCCGGCGAGCTCGAGGAGCGTGCTCGTGACGGCGCTGCTCGTCGACAAGAACTTCTTCGGCGCCAGCCATGGCGGCGGCGGCGGCGGCAGAGGCCCTCCGCTCACCGTGGTGGTGAGAGGACAGGTAAGGTTCAAGGTCTGGCTGGCCTACTCCAGGCCGTACGACGTCGCGGTGGAGTGCGCGCCTGTCGACGTCTCCTCCGGTGCCGGCGGCGGCAAGACTAGACCCAAATCCACCATGGTCAAGTGCATCCCCTGACATGACATGCGTACACATGTCATCTAC
More
|
||||||||||
| CDS seq | ATGGCGAGCAGCCACCCATTTCCAAGCTGGTGGGGCGCCAAGCACTACATCATGGCGGCCATCGCCGGAACCCTCGCCGCCAGCGCCATCGTCATCGTCACCTCCGTCGTCCTCAGCCCGACGCGGATATCCTTCTCGGTCACCGGCGGCGGCGCGTCCATCAGCCGTTCCGCCGGCGGCCAGGCGTTTCTCCTCAACCTCACCATCGCCGCCGACAACCCCAGCCACCGGGCCGGGGTGCAGTACCTCGCCTTCGCGGTGAGCTTGCAGCAGTTCACCGCGAGGAACAGGATGGAGTCGGTGGAGGCGACGGTCCAAGATGGCGTCCCGTTCTACCAGCCGCCGGCGAGCTCGAGGAGCGTGCTCGTGACGGCGCTGCTCGTCGACAAGAACTTCTTCGGCGCCAGCCATGGCGGCGGCGGCGGCGGCAGAGGCCCTCCGCTCACCGTGGTGGTGAGAGGACAGGTAAGGTTCAAGGTCTGGCTGGCCTACTCCAGGCCGTACGACGTCGCGGTGGAGTGCGCGCCTGTCGACGTCTCCTCCGGTGCCGGCGGCGGCAAGACTAGACCCAAATCCACCATGGTCAAGTGCATCCCCTGA
More
|
||||||||||
| Protein seq | MASSHPFPSWWGAKHYIMAAIAGTLAASAIVIVTSVVLSPTRISFSVTGGGASISRSAGGQAFLLNLTIAADNPSHRAGVQYLAFAVSLQQFTARNRMESVEATVQDGVPFYQPPASSRSVLVTALLVDKNFFGASHGGGGGGRGPPLTVVVRGQVRFKVWLAYSRPYDVAVECAPVDVSSGAGGGKTRPKSTMVKCIP |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0121400 | OsNip_06t0121400-00 | Chr06 | 1132265 | 1132893 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCGAGCAGCCACCCATTTCCAAGCTGGTGGGGCGCCAAGCACTACATCATGGCGGCCATCGCCGGAACCCTCGCCGCCAGCGCCATCGTCATCGTCACCTCCGTCGTCCTCAGCCCGACGCGGATATCCTTCTCGGTCACCGGCGGCGGCGCGTCCATCAGCCGTTCCGCCGGCGGCCAGGCGTTTCTCCTCAACCTCACCATCGCCGCCGACAACCCCAGCCACCGGGCCGGGGTGCAGTACCTCGCCTTCGCGGTGAGCTTGCAGCAGTTCACCGCGAGGAACAGGATGGAGTCGGTGGAGGCGACGGTCCAAGATGGCGTCCCGTTCTACCAGCCGCCGGCGAGCTCGAGGAGCGTGCTCGTGACGGCGCTGCTCGTCGACAAGAACTTCTTCGGCGCCAGCCATGGCGGCGGCGGCGGCGGCAGAGGCCCTCCGCTCACCGTGGTGGTGAGAGGACAGGTAAGGTTCAAGGTCTGGCTGGCCTACTCCAGGCCGTACGACGTCGCGGTGGAGTGCGCGCCTGTCGACGTCTCCTCCGGTGCCGGCGGCGGCAAGACTAGACCCAAATCCACCATGGTCAAGTGCATCCCCTGA
More
|
|||||||
| Protein seq | MASSHPFPSWWGAKHYIMAAIAGTLAASAIVIVTSVVLSPTRISFSVTGGGASISRSAGGQAFLLNLTIAADNPSHRAGVQYLAFAVSLQQFTARNRMESVEATVQDGVPFYQPPASSRSVLVTALLVDKNFFGASHGGGGGGRGPPLTVVVRGQVRFKVWLAYSRPYDVAVECAPVDVSSGAGGGKTRPKSTMVKCIP |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0121700 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g03070 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0121400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0001620 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0001500 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0001460 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0001450 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0001460 | RBH | 0.000000 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0018500 | RBH | 0.146848 | 0 | 0.1050625 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0001490 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0020100 | SBH | 0.182821 | 0 | 3.3739345 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0001550 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0001480 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0001430 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0001490 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0001340 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G001420 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0001550 | SBH | 0.0 | 0.0 | 0.0 |
