Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g0111100 | OGI:06001390 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:623493-626093 | ||||||||
| Gene Symbol | OsFbox286, Os_F0619 | ||||||||||
| DNA seq | GTGCAAGTCGCAACTCGCAAGCGATAATATGACATTCAGTAAGCAGTCTTCGAAAAAAGAAGAGAAAATCGTAAGCCTGCATTCACAAGGTCACAGAACACAAGCCAACTATGCGTACAAGCGAAGCAAGAACTAAGCATGGAAACTGCACGACAATACAACTTCGATGTACAAGAATCCATATATGCCAGGTCAAGAAGCCATTACAGGTACATAACCTATTAAATCTAACAAGCAGTAAGGAAAGGGCTTTGCAATGATGGCTAAAACATGATGACAAAACAAAGATGATAGATCACTGGTCAACACCATTAATAAAACTGGGGAGCACCCAGAGGTACTCTAGTTGACTGCAATGGCCTTCAGTTCGCAGGAGTGGATGACTGTATGGAACACAATGTGTTGCACCAGGAATTGGCTGACCAAGCTCGACTGCAGTCCAAGGTTCATCAGAATCTTCAGATGGTTTCGCAACATAAATGCAGTTACTCTTTCCGCCCCATCTTTCAGGGTTCGTGCAAGAGAACGTAGGATTCCTCCTATCAAGGCTGACAAATAGAGCACTATTTTCCAACTTTTCCATCTTCATCCACTTGGCTGTTTGAGCAGAAAAGTCAAGACGAAAGACTTGAAAGGTGCCAGGGAAACCATACGAATGGTGAATGCCTACTGAGAGGTCAAGCATGAGAAGCATGTCACCGCTGATCACCAGCCACGGCTTAAAATGTACACCCACAAACATTTCTTCTCCCCACACAACCCCTACTTCCTGCATGCTGAGCTGAGGTGCAAAGCGCATGGTATGGAGCCTGTGATGAAAGTCCATCGCAAAAAACTCACCTTTGAAGAGCACAATCTGAAGAATGCGCTCACCGCCAAAAGGGTGCTCTGACCAAGAATTCGTTCCAACCTGCCAATAGAATATGGACGATCTCGAACAAAGTAGGAGATGCGATATTGGCAAATTAAGTGGAGCAGTAAGGATGCCATAGTATGTTTCCTTGTTGCCTGCGGATTGTAGTTTGGGAGGCTTCACCTTAGCGCCAGTGTACATATCAACAAGGAGGCAATTCTCATAATATGAGAAGATGAGATACCCATATGAACAACCCAAATAGCGCATGCGATTTGGAGTATTTTGTGGAGCTGAACAGCGAAGGGATAAAGTTCTCTTGGATGGATCACCAAGCTGCCATCTGCATTTATATAAAAGAGTGTACCTAAAACTGCTGCAATGGGGATGGGAATTAGGTATATCTGGTTTCAGGTGAAGAGGTGGGAAGGTGAAAGTATATATGGATGGGAAGGAAGATAATGCAGCTCGCCAAGAGCGGCAAGTGCCACTAAAAGCAAGCAAGTCCTGGAATGAGCTAAGCAAAGCAATGATTTGGTGAAGCATGCTGTCCATGAGACCTGGCCAAACATGGGGTTCACACATGGTAGAGGATGTAGACACTGATGAGTGGCAGGTTTTCTTAAAGGGCCTTTCTGCAACAGAAACTTCCCTGTCAAACAAATGAAAAAAATTCAGGACGACTGGATCAGAGAAAGCACTCAAAGATAACATTATTAGTAAAGATTTAGAAATGGAATGATATTGATCACAATGTCGGTTCATTTAAAGAAGCAACATGAATTGGTAACTTCACCTACAGCTTGGGCATATCGAGCAATAGGCTCTTGTAACATGCTGAGGCAAATAATTATGCCCGTTTCATTGAACTGTAACAATTCCAAGAACCACTTACAGCTTTGATACCTTGAACAATAGCACAGTTGTAATCTGTCTAGTGTTCCAAACCCTTTTTTGGCCCCTCAAAACAATGACAGAGGGGTACGTTGTAGAGCACCCTCAGAACAAATATCACCAAAAGTGATGAAAATATTTATTCCGACAACATGAATATGCGGGCAATGCATCCAATTTAACAGGAAAAAAAATTGTAAGCGCATTTGATTAATTCATTAATCGATCTTGCTCCTCTCGCGGCCCAATTTAAACCACTACTGGCAGTGCTACCATACAAGAATGTCAGGTACCATAAACGTCCTGGAACTATGTAATCGACTAGAATCGTGTCGAGACCGCATTAAATTGTACCTAAATTTGAACACCAAATATCCATCATCTCCCACTATACCAAATTACCAATAGTTTCACACCTCATCACTGAACAACAGAACAAGTTATGCACTGGTGAGCTAGCTCACCCTACCTAGTTCATGACATCATGAGACGAAATCGCTATCGGCGCGTGGTATACGATGAATGAGGGTTCTTTGTCGCCTCACGATGATTTGACGCACATCCATCCACTCAGGAACATCGAATTAACAAAGGTGAAACAGAGAAGGATAAATAAAACAAACCAAATCATGGTTAGGGTTGCGGTGCGGACCTTTGGCCGAGAGCGGTGAGCTCCGTTGGCGAGGGCTCGGCCTGCGGCGACGGCGGCCGTGGTCTTCGCCGCTGCCGCTTCCGGCGGCTCCCGTCCATGAGCGCTTGCTAACCCGTAGCTTCCCCGGATGCGCCGGTGAGGAGACCAACCCGGCGGTGGCGACGGCGGCGGCGGCGGCGGCGCGTCCGATGGGAGTGGAGGC
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| CDS seq | ATGGACGGGAGCCGCCGGAAGCGGCAGCGGCGAAGACCACGGCCGCCGTCGCCGCAGGCCGAGCCCTCGCCAACGGAGCTCACCGCTCTCGGCCAAAGGGAAGTTTCTGTTGCAGAAAGGCCCTTTAAGAAAACCTGCCACTCATCAGTGTCTACATCCTCTACCATGTGTGAACCCCATGTTTGGCCAGGTCTCATGGACAGCATGCTTCACCAAATCATTGCTTTGCTTAGCTCATTCCAGGACTTGCTTGCTTTTAGTGGCACTTGCCGCTCTTGGCGAGCTGCATTATCTTCCTTCCCATCCATATATACTTTCACCTTCCCACCTCTTCACCTGAAACCAGATATACCTAATTCCCATCCCCATTGCAGCAGTTTTAGGTACACTCTTTTATATAAATGCAGATGGCAGCTTGGTGATCCATCCAAGAGAACTTTATCCCTTCGCTGTTCAGCTCCACAAAATACTCCAAATCGCATGCGCTATTTGGGTTGTTCATATGGGTATCTCATCTTCTCATATTATGAGAATTGCCTCCTTGTTGATATGTACACTGGCGCTAAGGTGAAGCCTCCCAAACTACAATCCGCAGGCAACAAGGAAACATACTATGGCATCCTTACTGCTCCACTTAATTTGCCAATATCGCATCTCCTACTTTGTTCGAGATCGTCCATATTCTATTGGCAGGTTGGAACGAATTCTTGGTCAGAGCACCCTTTTGGCGGTGAGCGCATTCTTCAGATTGTGCTCTTCAAAGGTGAGTTTTTTGCGATGGACTTTCATCACAGGCTCCATACCATGCGCTTTGCACCTCAGCTCAGCATGCAGGAAGTAGGGGTTGTGTGGGGAGAAGAAATGTTTGTGGGTGTACATTTTAAGCCGTGGCTGGTGATCAGCGGTGACATGCTTCTCATGCTTGACCTCTCAGTAGGCATTCACCATTCGTATGGTTTCCCTGGCACCTTTCAAGTCTTTCGTCTTGACTTTTCTGCTCAAACAGCCAAGTGGATGAAGATGGAAAAGTTGGAAAATAGTGCTCTATTTGTCAGCCTTGATAGGAGGAATCCTACGTTCTCTTGCACGAACCCTGAAAGATGGGGCGGAAAGAGTAACTGCATTTATGTTGCGAAACCATCTGAAGATTCTGATGAACCTTGGACTGCAGTCGAGCTTGGTCAGCCAATTCCTGGTGCAACACATTGTGTTCCATACAGTCATCCACTCCTGCGAACTGAAGGCCATTGCAGTCAACTAGAGTACCTCTGGGTGCTCCCCAGTTTTATTAATGGTGTTGACCAGTGA
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| Protein seq | MDGSRRKRQRRRPRPPSPQAEPSPTELTALGQREVSVAERPFKKTCHSSVSTSSTMCEPHVWPGLMDSMLHQIIALLSSFQDLLAFSGTCRSWRAALSSFPSIYTFTFPPLHLKPDIPNSHPHCSSFRYTLLYKCRWQLGDPSKRTLSLRCSAPQNTPNRMRYLGCSYGYLIFSYYENCLLVDMYTGAKVKPPKLQSAGNKETYYGILTAPLNLPISHLLLCSRSSIFYWQVGTNSWSEHPFGGERILQIVLFKGEFFAMDFHHRLHTMRFAPQLSMQEVGVVWGEEMFVGVHFKPWLVISGDMLLMLDLSVGIHHSYGFPGTFQVFRLDFSAQTAKWMKMEKLENSALFVSLDRRNPTFSCTNPERWGGKSNCIYVAKPSEDSDEPWTAVELGQPIPGATHCVPYSHPLLRTEGHCSQLEYLWVLPSFINGVDQ |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0111100 | OsNip_06t0111100-01 | Chr06 | 623493 | 626093 | - | RAP2018-11-26 | ||
| CDS seq | ATGGACGGGAGCCGCCGGAAGCGGCAGCGGCGAAGACCACGGCCGCCGTCGCCGCAGGCCGAGCCCTCGCCAACGGAGCTCACCGCTCTCGGCCAAAGGGAAGTTTCTGTTGCAGAAAGGCCCTTTAAGAAAACCTGCCACTCATCAGTGTCTACATCCTCTACCATGTGTGAACCCCATGTTTGGCCAGGTCTCATGGACAGCATGCTTCACCAAATCATTGCTTTGCTTAGCTCATTCCAGGACTTGCTTGCTTTTAGTGGCACTTGCCGCTCTTGGCGAGCTGCATTATCTTCCTTCCCATCCATATATACTTTCACCTTCCCACCTCTTCACCTGAAACCAGATATACCTAATTCCCATCCCCATTGCAGCAGTTTTAGGTACACTCTTTTATATAAATGCAGATGGCAGCTTGGTGATCCATCCAAGAGAACTTTATCCCTTCGCTGTTCAGCTCCACAAAATACTCCAAATCGCATGCGCTATTTGGGTTGTTCATATGGGTATCTCATCTTCTCATATTATGAGAATTGCCTCCTTGTTGATATGTACACTGGCGCTAAGGTGAAGCCTCCCAAACTACAATCCGCAGGCAACAAGGAAACATACTATGGCATCCTTACTGCTCCACTTAATTTGCCAATATCGCATCTCCTACTTTGTTCGAGATCGTCCATATTCTATTGGCAGGTTGGAACGAATTCTTGGTCAGAGCACCCTTTTGGCGGTGAGCGCATTCTTCAGATTGTGCTCTTCAAAGGTGAGTTTTTTGCGATGGACTTTCATCACAGGCTCCATACCATGCGCTTTGCACCTCAGCTCAGCATGCAGGAAGTAGGGGTTGTGTGGGGAGAAGAAATGTTTGTGGGTGTACATTTTAAGCCGTGGCTGGTGATCAGCGGTGACATGCTTCTCATGCTTGACCTCTCAGTAGGCATTCACCATTCGTATGGTTTCCCTGGCACCTTTCAAGTCTTTCGTCTTGACTTTTCTGCTCAAACAGCCAAGTGGATGAAGATGGAAAAGTTGGAAAATAGTGCTCTATTTGTCAGCCTTGATAGGAGGAATCCTACGTTCTCTTGCACGAACCCTGAAAGATGGGGCGGAAAGAGTAACTGCATTTATGTTGCGAAACCATCTGAAGATTCTGATGAACCTTGGACTGCAGTCGAGCTTGGTCAGCCAATTCCTGGTGCAACACATTGTGTTCCATACAGTCATCCACTCCTGCGAACTGAAGGCCATTGCAGTCAACTAGAGTACCTCTGGGTGCTCCCCAGTTTTATTAATGGTGTTGACCAGTGA
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| Protein seq | MDGSRRKRQRRRPRPPSPQAEPSPTELTALGQREVSVAERPFKKTCHSSVSTSSTMCEPHVWPGLMDSMLHQIIALLSSFQDLLAFSGTCRSWRAALSSFPSIYTFTFPPLHLKPDIPNSHPHCSSFRYTLLYKCRWQLGDPSKRTLSLRCSAPQNTPNRMRYLGCSYGYLIFSYYENCLLVDMYTGAKVKPPKLQSAGNKETYYGILTAPLNLPISHLLLCSRSSIFYWQVGTNSWSEHPFGGERILQIVLFKGEFFAMDFHHRLHTMRFAPQLSMQEVGVVWGEEMFVGVHFKPWLVISGDMLLMLDLSVGIHHSYGFPGTFQVFRLDFSAQTAKWMKMEKLENSALFVSLDRRNPTFSCTNPERWGGKSNCIYVAKPSEDSDEPWTAVELGQPIPGATHCVPYSHPLLRTEGHCSQLEYLWVLPSFINGVDQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.378874 | 0.0 | 0.699141 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g02100 | RBH | 0.251355 | 0.0 | 0.176559 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0111100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0000760 | RBH | 0.0 | 2.982259 | 0.723156 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0000770 | RBH | 0.069883 | 0.0 | 0.705628 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0000740 | RBH | 0.0 | 1.255039 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0000740 | RBH | 0.079504 | 0.098805 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0000720 | RBH | 1.181753 | 1.965338 | 2.840619 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0008800 | SBH | 6.3565215 | 15.746397 | 4.903684 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0000690 | RBH | 0.0 | 0.182998 | 0.081014 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0009500 | RBH | 1.4282335 | 3.4936775 | 6.234177 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0000720 | RBH | 0.0 | 0.104330 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0000720 | RBH | 0.291321 | 3.458549 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0000730 | RBH | 4.032879 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0000720 | RBH | 0.105510 | 0.204975 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0000680 | RBH | 0.102310 | 1.602157 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G000710 | RBH | 0.089745 | 0.509118 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0000710 | RBH | 0.408055 | 0.0 | 2.469622 |
