Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g0107800 | OGI:06001080 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:484346-485308 | ||||||||
| Gene Symbol | BPH29, Bph29 | ||||||||||
| DNA seq | CACAATCAACCCGCAAAAACAAATTCTATTCATCGATCTGACAAGAAACATGAAATTTAATTTGGAAAAATGAAAGCAAAGCTAGCTAGGTACCTTAGCCTTGTGTTGTTGCTTGCTTCCATCGTCCAATTAATCATCTTCAGTGCATATATATCAATCGATCCATGTCTAATTAATTAAATTCACCCCTCCTAATTAATCTTGTGCTAATCTAATGTACAACTTCGTCTTCGACGACCTCATTTTATTCGACAGGAGAGCAGCATGCATGTTCGTGTATGAATAATACTAATTTTTTTGAGGGAAAATGAATACTAATCAGTTGGAGAATTAGTACAAAACTGATGAGATGCCTCAGCTAGATCAAAGCTGCAAATCCAGCGCCGGCGAGGCATCGGCGCGGAGCTGGAGGTCCACGCCGAACAGCCGGAGGCACCGCCGGCCACACGCAGCCTCCTCCTCGTCGACGACAGGCCGCGACGGCGGCAGCTGCACCTTGATCAAGGCCGGTGGCACCAGCGACGAGGACGACACGGAGGCGGCGCGCTTCCGGCAGTCGATGAAGAGGCGGGCACCGGCGCGGCAGAAGGAGACGGTGTCGCCGGCGGCGAGGCGCTTGTCGCGGACGTAGCGGCTCCATCCCTTGGTGATGACGTAGCTCTGGCTGCTGCTCCAGTAGGAGTAGCGGAAGCGCCACGTGCTGTCGCCGCCCCGCGCGTCCTCGAAGCACAGCACGGTGCCCGCCGGGCTGGTCCTCGCCGCCGGCCCCAGCGGGAAGTACTTCTCGGCGTAGTGCTTCGGCACCACCAGCCTGTTCAGCTTCCCCACGTCGCTCGGCGTCACCACCTTCTCGAACATGTACTCCCGCCGCTCGCCGCCGCCACCGCCGCCGCCACCGCCATGGCCACCTCCTCCTCCTTGCAGCTGCAGGTTTCTACTCTCCCATGCAACAATGGTGGCCAT
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| CDS seq | ATGGCCACCATTGTTGCATGGGAGAGTAGAAACCTGCAGCTGCAAGGAGGAGGAGGTGGCCATGGCGGTGGCGGCGGCGGTGGCGGCGGCGAGCGGCGGGAGTACATGTTCGAGAAGGTGGTGACGCCGAGCGACGTGGGGAAGCTGAACAGGCTGGTGGTGCCGAAGCACTACGCCGAGAAGTACTTCCCGCTGGGGCCGGCGGCGAGGACCAGCCCGGCGGGCACCGTGCTGTGCTTCGAGGACGCGCGGGGCGGCGACAGCACGTGGCGCTTCCGCTACTCCTACTGGAGCAGCAGCCAGAGCTACGTCATCACCAAGGGATGGAGCCGCTACGTCCGCGACAAGCGCCTCGCCGCCGGCGACACCGTCTCCTTCTGCCGCGCCGGTGCCCGCCTCTTCATCGACTGCCGGAAGCGCGCCGCCTCCGTGTCGTCCTCGTCGCTGGTGCCACCGGCCTTGATCAAGGTGCAGCTGCCGCCGTCGCGGCCTGTCGTCGACGAGGAGGAGGCTGCGTGTGGCCGGCGGTGCCTCCGGCTGTTCGGCGTGGACCTCCAGCTCCGCGCCGATGCCTCGCCGGCGCTGGATTTGCAGCTTTGA
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| Protein seq | MATIVAWESRNLQLQGGGGGHGGGGGGGGGERREYMFEKVVTPSDVGKLNRLVVPKHYAEKYFPLGPAARTSPAGTVLCFEDARGGDSTWRFRYSYWSSSQSYVITKGWSRYVRDKRLAAGDTVSFCRAGARLFIDCRKRAASVSSSSLVPPALIKVQLPPSRPVVDEEEAACGRRCLRLFGVDLQLRADASPALDLQL |
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| Function | B3 domain-containing protein Os06g0107800 [UniProtKB/Swiss-Prot:Q5VS55] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0107800 | OsNip_06t0107800-01 | Chr06 | 484346 | 485308 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCGGACGCGCGGGGCGGCGACAGCACGTGGCGCTTCCGCTACTCCTACTGGAGCAGCAGCCAGAGCTACGTCATCACCAAGGGATGGAGCCGCTACGTCCGCGACAAGCGCCTCGCCGCCGGCGACACCGTCTCCTTCTGCCGCGCCGGTGCCCGCCTCTTCATCGACTGCCGGAAGCGCGCCGCCTCCGTGTCGTCCTCGTCGCTGGTGCCACCGGCCTTGATCAAGGTGCAGCTGCCGCCGTCGCGGCCTGTCGTCGACGAGGAGGAGGCTGCGTGTGGCCGGCGGTGCCTCCGGCTGTTCGGCGTGGACCTCCAGCTCCGCGCCGATGCCTCGCCGGCGCTGGATTTGCAGCTTTGA
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| Protein seq | MADARGGDSTWRFRYSYWSSSQSYVITKGWSRYVRDKRLAAGDTVSFCRAGARLFIDCRKRAASVSSSSLVPPALIKVQLPPSRPVVDEEEAACGRRCLRLFGVDLQLRADASPALDLQL |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0107800 | OsNip_06t0107800-02 | Chr06 | 484709 | 485308 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCCACCATTGTTGCATGGGAGAGTAGAAACCTGCAGCTGCAAGGAGGAGGAGGTGGCCATGGCGGTGGCGGCGGCGGTGGCGGCGGCGAGCGGCGGGAGTACATGTTCGAGAAGGTGGTGACGCCGAGCGACGTGGGGAAGCTGAACAGGCTGGTGGTGCCGAAGCACTACGCCGAGAAGTACTTCCCGCTGGGGCCGGCGGCGAGGACCAGCCCGGCGGGCACCGTGCTGTGCTTCGAGGACGCGCGGGGCGGCGACAGCACGTGGCGCTTCCGCTACTCCTACTGGAGCAGCAGCCAGAGCTACGTCATCACCAAGGGATGGAGCCGCTACGTCCGCGACAAGCGCCTCGCCGCCGGCGACACCGTCTCCTTCTGCCGCGCCGGTGCCCGCCTCTTCATCGACTGCCGGAAGCGCGCCGCCTCCGTGTCGTCCTCGTCGCTGGTGCCACCGGCCTTGATCAAGGTGCAGCTGCCGCCGTCGCGGCCTGTCGTCGACGAGGAGGAGGCTGCGTGTGGCCGGCGGTGCCTCCGGCTGTTCGGCGTGGACCTCCAGCTCCGCGCCGATGCCTCGCCGGCGCTGGATTTGCAGCTTTGA
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| Protein seq | MATIVAWESRNLQLQGGGGGHGGGGGGGGGERREYMFEKVVTPSDVGKLNRLVVPKHYAEKYFPLGPAARTSPAGTVLCFEDARGGDSTWRFRYSYWSSSQSYVITKGWSRYVRDKRLAAGDTVSFCRAGARLFIDCRKRAASVSSSSLVPPALIKVQLPPSRPVVDEEEAACGRRCLRLFGVDLQLRADASPALDLQL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g01860 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0107800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0000580 | RBH | 0.0 | 14.012362 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0000580 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0000560 | RBH | 0.0 | 6.479244 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0000560 | RBH | 0.0 | 0.286065 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0000540 | RBH | 0.0 | 2.995687 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0006600 | RBH | 0 | 17.111842 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0000510 | RBH | 0.0 | 1.111901 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0006900 | RBH | 0 | 14.560272 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0000540 | RBH | 0.000000 | 0.116611 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0000540 | RBH | 0.0 | 2.899266 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0000550 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0000540 | RBH | 0.0 | 0.229105 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0000510 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G000520 | RBH | 0.0 | 0.795440 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0000530 | RBH | 0.0 | 11.368582 | 0.0 |
