Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_05g0588300 | OGI:05079380 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr05:29310712-29311669 | ||||||||
| Gene Symbol | OsJ_RLL1 | ||||||||||
| DNA seq | ACGATGGACTGGGACGCGCGGATGCGCGCCGCGCTGTCGGCCGCGCGCGGCGTGGCGCACTTGCACGCCGCGCACAGCCTCGCCCACGGCAACCTCAAGTCGTCCAACCTCCTGCTCCGCCCGGACCCCGACGCCACCGCGCTCTCCGACTACTGCCTCCACCAGCTCTTCGCCCCGCTGTCGGCGCGCCCCAACGCCGGCGGGTACCGGGCGCCGGAGCTGGTGGACGCGCGGCGGCCGACGTTCAAGTCCGACGTGTACTCGCTGGGGGTGCTGTTCCTGGAGCTCCTCACCGGCAAGTCACCCGGGAACGCGTCCGTGGACGGCGACGGAGCGGTGGACCTCCCGCGGTGGGTGCAGTCGGTGGTGCGGGAGGAGTGGACCGCGGAGGTGTTCGACGTGGAGCTGGTGCGGCTCGGCGGGAGCGCGGAGGAGGAGATGGTGGCGCTGCTGCAGGTGGCCATGGCGTGCGTCGCCACCGCGCCGGACGCCCGCCCGGACACCGCCGACGTGGTCAAGATGATAGAGGAGATCGGCAGCGGCCACGGGCGGACAACGACGGAGGAGAGCGAGGACCGGTCGAGGGGGACGCCGCCGGCAGGCACGACGCCGTGAACACTCTACTCTCTCTACTGGTGTCGTAATGCAGCAGCACATGTCAGGGTAAATTGATGCATGAACAGCTTCGTTCGTTCGTTCGTGGCGAAGTTCTCTCACTCTGTTTTTTTTTTTGTCCTCCATTTCTTCAGTTTATAGCCTCTCTTGACTTGATCTAGTAATTCTTCCATTGTTTCGTCGATCAAATGAGTTGTTACTACCTGTTCGTTCCTCTTCAGCCAAGTGTAATTTTTCAGTCCGTATCTACTACCACCATTGTAGCTCTTCGTATATGCATCTTCATTTTGATGCTGTGAAGTATATGTAGGAGTATGACACATGAATAAACAGAAAACCTGTG
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| CDS seq | ATGGACTGGGACGCGCGGATGCGCGCCGCGCTGTCGGCCGCGCGCGGCGTGGCGCACTTGCACGCCGCGCACAGCCTCGCCCACGGCAACCTCAAGTCGTCCAACCTCCTGCTCCGCCCGGACCCCGACGCCACCGCGCTCTCCGACTACTGCCTCCACCAGCTCTTCGCCCCGCTGTCGGCGCGCCCCAACGCCGGCGGGTACCGGGCGCCGGAGCTGGTGGACGCGCGGCGGCCGACGTTCAAGTCCGACGTGTACTCGCTGGGGGTGCTGTTCCTGGAGCTCCTCACCGGCAAGTCACCCGGGAACGCGTCCGTGGACGGCGACGGAGCGGTGGACCTCCCGCGGTGGGTGCAGTCGGTGGTGCGGGAGGAGTGGACCGCGGAGGTGTTCGACGTGGAGCTGGTGCGGCTCGGCGGGAGCGCGGAGGAGGAGATGGTGGCGCTGCTGCAGGTGGCCATGGCGTGCGTCGCCACCGCGCCGGACGCCCGCCCGGACACCGCCGACGTGGTCAAGATGATAGAGGAGATCGGCAGCGGCCACGGGCGGACAACGACGGAGGAGAGCGAGGACCGGTCGAGGGGGACGCCGCCGGCAGGCACGACGCCGTGA
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| Protein seq | MDWDARMRAALSAARGVAHLHAAHSLAHGNLKSSNLLLRPDPDATALSDYCLHQLFAPLSARPNAGGYRAPELVDARRPTFKSDVYSLGVLFLELLTGKSPGNASVDGDGAVDLPRWVQSVVREEWTAEVFDVELVRLGGSAEEEMVALLQVAMACVATAPDARPDTADVVKMIEEIGSGHGRTTTEESEDRSRGTPPAGTTP |
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| Function | Probable inactive receptor kinase At2g26730 [UniProtKB/Swiss-Prot:O48788] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0588300 | OsNip_05t0588300-01 | Chr05 | 29310712 | 29311669 | + | RAP2018-11-26 | ||
| CDS seq | ATGGACTGGGACGCGCGGATGCGCGCCGCGCTGTCGGCCGCGCGCGGCGTGGCGCACTTGCACGCCGCGCACAGCCTCGCCCACGGCAACCTCAAGTCGTCCAACCTCCTGCTCCGCCCGGACCCCGACGCCACCGCGCTCTCCGACTACTGCCTCCACCAGCTCTTCGCCCCGCTGTCGGCGCGCCCCAACGCCGGCGGGTACCGGGCGCCGGAGCTGGTGGACGCGCGGCGGCCGACGTTCAAGTCCGACGTGTACTCGCTGGGGGTGCTGTTCCTGGAGCTCCTCACCGGCAAGTCACCCGGGAACGCGTCCGTGGACGGCGACGGAGCGGTGGACCTCCCGCGGTGGGTGCAGTCGGTGGTGCGGGAGGAGTGGACCGCGGAGGTGTTCGACGTGGAGCTGGTGCGGCTCGGCGGGAGCGCGGAGGAGGAGATGGTGGCGCTGCTGCAGGTGGCCATGGCGTGCGTCGCCACCGCGCCGGACGCCCGCCCGGACACCGCCGACGTGGTCAAGATGATAGAGGAGATCGGCAGCGGCCACGGGCGGACAACGACGGAGGAGAGCGAGGACCGGTCGAGGGGGACGCCGCCGGCAGGCACGACGCCGTGA
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| Protein seq | MDWDARMRAALSAARGVAHLHAAHSLAHGNLKSSNLLLRPDPDATALSDYCLHQLFAPLSARPNAGGYRAPELVDARRPTFKSDVYSLGVLFLELLTGKSPGNASVDGDGAVDLPRWVQSVVREEWTAEVFDVELVRLGGSAEEEMVALLQVAMACVATAPDARPDTADVVKMIEEIGSGHGRTTTEESEDRSRGTPPAGTTP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.437063 | 6.648041 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0607900 | RBH | 0.0 | 0.296819 | 2.122998 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g51070 | RBH | 2.338593 | 2.208342 | 0.130912 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0588300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0028870 | RBH | 0.659648 | 8.685388 | 2.077806 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0028670 | RBH | 0.434015 | 4.007259 | 1.010965 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0028670 | RBH | 0.620902 | 0.942693 | 2.124784 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0028730 | RBH | 0.111249 | 0.050524 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0028600 | RBH | 3.792884 | 2.441808 | 7.686363 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0458400 | RBH | 5.9717485 | 5.7064215 | 0.4832995 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0028300 | RBH | 0.133944 | 0.060110 | 0.201118 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0471700 | RBH | 5.374635 | 2.1254265 | 1.267234 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0028470 | RBH | 0.312631 | 0.202871 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0028380 | RBH | 0.101292 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0028620 | RBH | 1.520648 | 2.705341 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0028600 | RBH | 1.789856 | 0.481878 | 1.890389 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0028650 | RBH | 0.603325 | 4.913976 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G028160 | RBH | 0.198628 | 0.736281 | 1.271734 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0028670 | RBH | 0.793468 | 0.0 | 2.471951 |
