Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_05g0583950 | OGI:05058520 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr05:29061003-29062235 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTACACAAAAGAAACATTAGCAGAACCTCTCAATCTTGCCTTGGCATCCAATAATGCCTGGCAGATCGACTCACTTGTTTGCAAACCAGCACGCACCATGTCATCAAGCAGAGCCTCAGCTTCCTGACATTTATCATCCTTGCAAAGAACACGGATTGTCAAGCCGTAACTTGCAGAATTTGGAATCAAACCCTTCTGCCTCATCTCCATGATTAACTTCAGAGCCTTGTATGAGCTCCCTTCTCTCCCATAGCCATAAATCATCATGTCATAGATCACATTGCTTGGCTCAACACCTTTCTCTCCCATTGACTGAAACAGCTTTCTAGCATCCTTCATATTCCCTTCCATGCAGAGTGCACGGACCAGAACACCATAAGTGTGTGCATCCACCTCTAGACCTGCCTTTTCCATCCCTGCGAGAATCTCAAAAGCCTTACCCATGTGATTTTCTCTAGCAAATGAATCAATTAGTATCGTGTATGTCACTTTGGTCGGTTCCAAGCCTCGTTCCTTCATGTCAGATAAAGCCCTGTTTGCCCGGGTCATATCTCTAGCACGACAGAAGCCAGCAATAAGCATGTTGTATGTCACTGCACTTGGCTGGAAACCAGCCGCTTTCATCTGGTTGAAGAAAGGCAAAGCATTGGACATCTTGCCAGCTTTGCCGTATCCATCAACAAGAAGATTAAATGTAATGATGCTCGGACGGGTACCCTCCGTGCGCATCATATCCAACAGCTTGGCAGCATCCCACAACTTGCCATGCCTACATAGGCCGGCAATGAGGGTGTTATAGCTGACAACATTGCGCACAATGCCCCTCACAGGCATTTCGTCGAACAAGCTACGAGCGCGCTCGAACTCCCCTGTCCTGCACCACTCCCCAATCAAGCAGTTGTAGGTGTAGAGATTTGGCTCGACTCCACCCCTCCTCATCTCCTCAAACAAGGCGAAACCCTTCTCCCTTTGGCCATGAGTGAAGTAGCCATGCATCAGAGCAGTGTAAGTGACCTCGTTAGGTGCAAGCCCCAGGAGCGGCATTTCATCGAACACCCTCCGGGCCTCCGCCACATCGCCGCCCTTGCAGCAGCCGTTGACGAGCGCCGTGCACGCGGTGACGTCCAGCGCCGCATCGCCCGACTTGGTCCCGCGGGCGAGCATCGCGAGCGCCGAGCGGACATCGCCGGCCGCGCAGAGCCGGCGCACGGCTGCGGCCGTGGTTCCCCACAT
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| CDS seq | ATGTGGGGAACCACGGCCGCAGCCGTGCGCCGGCTCTGCGCGGCCGGCGATGTCCGCTCGGCGCTCGCGATGCTCGCCCGCGGGACCAAGTCGGGCGATGCGGCGCTGGACGTCACCGCGTGCACGGCGCTCGTCAACGGCTGCTGCAAGGGCGGCGATGTGGCGGAGGCCCGGAGGGTGTTCGATGAAATGCCGCTCCTGGGGCTTGCACCTAACGAGGTCACTTACACTGCTCTGATGCATGGCTACTTCACTCATGGCCAAAGGGAGAAGGGTTTCGCCTTGTTTGAGGAGATGAGGAGGGGTGGAGTCGAGCCAAATCTCTACACCTACAACTGCTTGATTGGGGAGTGGTGCAGGACAGGGGAGTTCGAGCGCGCTCGTAGCTTGTTCGACGAAATGCCTGTGAGGGGCATTGTGCGCAATGTTGTCAGCTATAACACCCTCATTGCCGGCCTATGTAGGCATGGCAAGTTGTGGGATGCTGCCAAGCTGTTGGATATGATGCGCACGGAGGGTACCCGTCCGAGCATCATTACATTTAATCTTCTTGTTGATGGATACGGCAAAGCTGGCAAGATGTCCAATGCTTTGCCTTTCTTCAACCAGATGAAAGCGGCTGGTTTCCAGCCAAGTGCAGTGACATACAACATGCTTATTGCTGGCTTCTGTCGTGCTAGAGATATGACCCGGGCAAACAGGGCTTTATCTGACATGAAGGAACGAGGCTTGGAACCGACCAAAGTGACATACACGATACTAATTGATTCATTTGCTAGAGAAAATCACATGGGTAAGGCTTTTGAGATTCTCGCAGGGATGGAAAAGGCAGGTCTAGAGGTGGATGCACACACTTATGGTGTTCTGGTCCGTGCACTCTGCATGGAAGGGAATATGAAGGATGCTAGAAAGCTGTTTCAGTCAATGGGAGAGAAAGGTGTTGAGCCAAGCAATGTGATCTATGACATGATGATTTATGGCTATGGGAGAGAAGGGAGCTCATACAAGGCTCTGAAGTTAATCATGGAGATGAGGCAGAAGGGTTTGATTCCAAATTCTGCAAGTTACGGCTTGACAATCCGTGTTCTTTGCAAGGATGATAAATGTCAGGAAGCTGAGGCTCTGCTTGATGACATGGTGCGTGCTGGTTTGCAAACAAGTGAGTCGATCTGCCAGGCATTATTGGATGCCAAGGCAAGATTGAGAGGTTCTGCTAATGTTTCTTTTGTGTAG
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| Protein seq | MWGTTAAAVRRLCAAGDVRSALAMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQKGLIPNSASYGLTIRVLCKDDKCQEAEALLDDMVRAGLQTSESICQALLDAKARLRGSANVSFV |
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| Function | Pentatricopeptide repeat-containing protein At4g11690 [UniProtKB/Swiss-Prot:Q9T0D6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0583950 | OsNip_05t0583950-00 | Chr05 | 29061003 | 29062235 | - | RAP2018-11-26 | ||
| CDS seq | ATGTGGGGAACCACGGCCGCAGCCGTGCGCCGGCTCTGCGCGGCCGGCGATGTCCGCTCGGCGCTCGCGATGCTCGCCCGCGGGACCAAGTCGGGCGATGCGGCGCTGGACGTCACCGCGTGCACGGCGCTCGTCAACGGCTGCTGCAAGGGCGGCGATGTGGCGGAGGCCCGGAGGGTGTTCGATGAAATGCCGCTCCTGGGGCTTGCACCTAACGAGGTCACTTACACTGCTCTGATGCATGGCTACTTCACTCATGGCCAAAGGGAGAAGGGTTTCGCCTTGTTTGAGGAGATGAGGAGGGGTGGAGTCGAGCCAAATCTCTACACCTACAACTGCTTGATTGGGGAGTGGTGCAGGACAGGGGAGTTCGAGCGCGCTCGTAGCTTGTTCGACGAAATGCCTGTGAGGGGCATTGTGCGCAATGTTGTCAGCTATAACACCCTCATTGCCGGCCTATGTAGGCATGGCAAGTTGTGGGATGCTGCCAAGCTGTTGGATATGATGCGCACGGAGGGTACCCGTCCGAGCATCATTACATTTAATCTTCTTGTTGATGGATACGGCAAAGCTGGCAAGATGTCCAATGCTTTGCCTTTCTTCAACCAGATGAAAGCGGCTGGTTTCCAGCCAAGTGCAGTGACATACAACATGCTTATTGCTGGCTTCTGTCGTGCTAGAGATATGACCCGGGCAAACAGGGCTTTATCTGACATGAAGGAACGAGGCTTGGAACCGACCAAAGTGACATACACGATACTAATTGATTCATTTGCTAGAGAAAATCACATGGGTAAGGCTTTTGAGATTCTCGCAGGGATGGAAAAGGCAGGTCTAGAGGTGGATGCACACACTTATGGTGTTCTGGTCCGTGCACTCTGCATGGAAGGGAATATGAAGGATGCTAGAAAGCTGTTTCAGTCAATGGGAGAGAAAGGTGTTGAGCCAAGCAATGTGATCTATGACATGATGATTTATGGCTATGGGAGAGAAGGGAGCTCATACAAGGCTCTGAAGTTAATCATGGAGATGAGGCAGAAGGGTTTGATTCCAAATTCTGCAAGTTACGGCTTGACAATCCGTGTTCTTTGCAAGGATGATAAATGTCAGGAAGCTGAGGCTCTGCTTGATGACATGGTGCGTGCTGGTTTGCAAACAAGTGAGTCGATCTGCCAGGCATTATTGGATGCCAAGGCAAGATTGAGAGGTTCTGCTAATGTTTCTTTTGTGTAG
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| Protein seq | MWGTTAAAVRRLCAAGDVRSALAMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQKGLIPNSASYGLTIRVLCKDDKCQEAEALLDDMVRAGLQTSESICQALLDAKARLRGSANVSFV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.396016 | 0.285094 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g50690 | RBH | 0.225634 | 0.368601 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0583950 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0028540 | RBH | 0.000000 | 0.0 | 0.403060 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0028330 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0028330 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0028390 | RBH | 0.0 | 0.081417 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0028280 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0422800 | SBH | 0.610802 | 1.9705645 | 1.1906085 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0028020 | RBH | 0.060738 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0467600 | RBH | 0.3472945 | 0.65356 | 1.462504 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0028130 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0028020 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0028270 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0028260 | RBH | 0.0 | 0.186798 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0028310 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G027820 | RBH | 0.098420 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0028340 | RBH | 0.0 | 0.0 | 0.000000 |
