Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_05g0565900 | OGI:05076170 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr05:28154693-28157931 | ||||||||
| Gene Symbol | WRKY49, OsWRKY49 | ||||||||||
| DNA seq | ATGTCGGGCGGCGGCGGCGGCGGCGAGGGCTTCCCGTTCCACGACGAGCTGGCGTCGCTGTTCGCTGAGCGGCCGCCGAACGGCGCCATGCCGGGGATGCTGCAGCAGCAGCAGCCGTGGTCGTTCATCGACTACCACCACCACCTGATGCAGGAGAGCGCGCCGACGACGCCGCCGCTGGACTACGAGGCATTCGCCGGGGAGTTCGACGACGACGTGGCGCCTCTGGAGGAGGTGAAGAGGGAGCTGGTGGTGGACGGCGTCGGGTTGTTCCCTGGGGGTGGTGCTTCTGCTGCTGCGGCGGCGGCGGCGGTGGCGGGGCCGATGACTCCGAACAGCATGTCGGTGTCGTCGACGTCGAGCGAGGCGTGCGGCGTCGGCGGCGGCGCCGGAGGGGACGAGGAGTCGGCCGGGAAGTGCAAGAAGGAGGAGGAGGGGGACGGCGGCGACGACGACGGCAAGGAAGGATCGTCGACGACCAAGGGGGATGGCGATGGAGAAGACAAGAACAAGAAAGGGTGAGTTCTTTCATCTCATCTCATCTCATCCCATCCCATCTTGAACTGGATCTTGAAATTCATCCCATCTTGAACTGTATCTTGAAATTCATTTTGCTAGCTTTAGAAAGGTTGATTTGGCGAAGTCTTTGATTTTCTGTTCTGACTGGTGCTATTGGTGACATTAATGTGACAAAAAAAGATTAATAATCAGGAACAGGTTTTCTCTTTGTGTTCATGTTGATTTTTCTTCCGTCTGTTTCCTGAATGACTGTATCCAGATTTGAGCATGTTTAATTTTCTTCACGTTTTAATTTATTTCCTCTTTGGTTTGGTCAAGATGTGTGCATTTTGGCTCCTCTTTTGGTTTCGGTCAAGGACGTGTGAACTCGATGCGCTAGGGTTTCTCACTAGCTAGCACATGCTCGCCGAGCAATTAATACAAAACGAAAAGAGCTTGATCGTTAGGTAGTTTTTTTCTTTCAGAAAAAAGTTGATCAATGTTTTTTTGCTCACGCCTTTTGCTAGTCTTTGCATCACTTTCTTGATCTCTTCCTCTTGTCTTCATCTGATATCTCTTTGAGATATGCATGGTGCGTTCTTAGTTCGCAAGCATTATATTACGACACACACACACACAATATATGAATTGCATTTAATTAGGATAATATATCACACCAGTCTGCAGATTCAGCCTATCAACTCAACTGATCGATCGATATCGATCAATCTCAGTTGGTGGCCAAGTTTTAAGTTTAACTGAACACATCGATCTATCGTTTTCATGGCAAACTTAATTTACCTTGCAACTTTAAACTCCTAGATTTTTGTTGCATCTGTAAATGTGACCCTGACCCCTCCTCCAAATTGTCTAGCTAGCAGTTAAATCACAAATTGATCAGTAGATCCTACCAAAATATATGACCAGGCCGTACATACGTACGCATGTATGTATGGCCGTGTGAACTCTGAAGTCGTCATGTGTAGATGCCCGCGCCGCCGTGCCGTCCATACGTACCTACGCGGCTACTACTACCCTCTGTACGCAGCCACTATGTTTGAATGGACCAACAACTGATCATCCATCGATTAGTATAATTAATCTCAATTTGCAGCTAATTAAGCTAGCTAGTATGAACATGATCTTGCTCGATCTATGGCACACACCAAAAATATGTAGCTTGTTGGGTAGTATAGTAGTACTGTCATTGAATTGACCTTGCTGTTAATTAGTTAGCATAGCTAGCTGATGTGTGATGAACTGATGACTGGATGAATTGATGTGAGTGAAAAAAAAATTTCATTTGCAGAGGTAAGGGGAAGGGGAAGGGGGAGAAGAGGCCGCGGCAGCCGCGGTTCGCGTTCATGACCAAGAGCGAGGTCGACCACCTCGAGGATGGCTACCGGTGGCGCAAGTACGGCCAGAAAGCCGTCAAGAACAGCCCATTTCCCAGGTACTTCGTTTTATATTATAAGTCGTTTTAATTTTTTTTAATTAAATTTTCTTAAGTTTGATCAAATTTATAGGAATGTTTAGCAACGTCTATAGCACCAAATTAGCTTCATCAAAACTAGCATTTAAATTAATATGTTTGATAATACGTTTGTTTCGTGTTGAAAATTAATGTAGCTATATTTTTCTATAATAAACTCGATCAAACTTTTAAAAGTTTAATTAGAAAAAAAGTTAAAATGATTTATAATATGAAATGGAACGAGTAAGAACTTAGTTATGAATCATGAATGCATTTGGTAGCTGAGATATATATGGATCATTGATAATTGATTAGGGTTCTTACGTTTGTGTGATGGATGGATGGATGGGTGCAGGAGCTACTACCGGTGCACGACGCAGAAGTGCCCGGTGAAGAAGAGGGTGGAGCGGTCGTACCAGGACGCGGCGGTGGTGATCACCACCTACGAGGGGAAGCACACGCACCCGATCCCGGCGACGCTGCGCGGCACGGCGCACCTCCTCGGCGCCGCCGCCGCCGCGCACCACCACGGCGGCCTCCAGTACCACCATCCCGGCCACTTCGCAGCCGCCGTCGGCCACCGTTTGCCTCCGCAGCCGCACGACGCGCTCGGCGGCGGCCTCCTGGCGCCGCCGCATGCGCAGCATCTCCATGCCATGCAGCACCAGATGCAGCTGGCGGCGGCGGCGGCGGCGAGCGGCGGATCACTGCACGCCGCCGCCATGCAGCAGATGCCGCAGCCTGATCATGCTGGCTTGGTTGCCATCATCGCCTCTACCACCGGTGCTTCCACCACGCCGCCGCCGCCGCCGGCGACGGGGAGCGCTGCTGCTGCTACTACTCCTCTCCGGATGCAGCACTTCATGGCGCAGGATTACGGCCTCCTGCAGGACATGTTCATCCCGTCGCCGTTCTTGCACAACGACGACGCCAACAACAACAACCACCGTTGATCGATGATGATGATGATGATCACTAGCTCGAGCTGGATGGCCGGCTACTGATATACTCTGATAGTGATTTGCATCTTGTTAACTTAATTTCTCCTTTTTTTGGTTCTGAACATCTGATCGATTGATCTGTATACGATGCATTCTACGACGATGGTACGTGTAGTACTATGATGATGATCTAGCAAGTAGCCTAGTTGTAGCATGCAGCATCGGCGGCAGCAGCAGTAGTATACTACTAGTAGTAGAAGTTGTTGTACATGTACCTGATTCTCATGAGCTCGTACGTGCAGACTTGCACTGCACTTTGGGGGGCA
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| CDS seq | ATGTCGGGCGGCGGCGGCGGCGGCGAGGGCTTCCCGTTCCACGACGAGCTGGCGTCGCTGTTCGCTGAGCGGCCGCCGAACGGCGCCATGCCGGGGATGCTGCAGCAGCAGCAGCCGTGGTCGTTCATCGACTACCACCACCACCTGATGCAGGAGAGCGCGCCGACGACGCCGCCGCTGGACTACGAGGCATTCGCCGGGGAGTTCGACGACGACGTGGCGCCTCTGGAGGAGGTGAAGAGGGAGCTGGTGGTGGACGGCGTCGGGTTGTTCCCTGGGGGTGGTGCTTCTGCTGCTGCGGCGGCGGCGGCGGTGGCGGGGCCGATGACTCCGAACAGCATGTCGGTGTCGTCGACGTCGAGCGAGGCGTGCGGCGTCGGCGGCGGCGCCGGAGGGGACGAGGAGTCGGCCGGGAAGTGCAAGAAGGAGGAGGAGGGGGACGGCGGCGACGACGACGGCAAGGAAGGATCGTCGACGACCAAGGGGGATGGCGATGGAGAAGACAAGAACAAGAAAGGAGGTAAGGGGAAGGGGAAGGGGGAGAAGAGGCCGCGGCAGCCGCGGTTCGCGTTCATGACCAAGAGCGAGGTCGACCACCTCGAGGATGGCTACCGGTGGCGCAAGTACGGCCAGAAAGCCGTCAAGAACAGCCCATTTCCCAGGAGCTACTACCGGTGCACGACGCAGAAGTGCCCGGTGAAGAAGAGGGTGGAGCGGTCGTACCAGGACGCGGCGGTGGTGATCACCACCTACGAGGGGAAGCACACGCACCCGATCCCGGCGACGCTGCGCGGCACGGCGCACCTCCTCGGCGCCGCCGCCGCCGCGCACCACCACGGCGGCCTCCAGTACCACCATCCCGGCCACTTCGCAGCCGCCGTCGGCCACCGTTTGCCTCCGCAGCCGCACGACGCGCTCGGCGGCGGCCTCCTGGCGCCGCCGCATGCGCAGCATCTCCATGCCATGCAGCACCAGATGCAGCTGGCGGCGGCGGCGGCGGCGAGCGGCGGATCACTGCACGCCGCCGCCATGCAGCAGATGCCGCAGCCTGATCATGCTGGCTTGGTTGCCATCATCGCCTCTACCACCGGTGCTTCCACCACGCCGCCGCCGCCGCCGGCGACGGGGAGCGCTGCTGCTGCTACTACTCCTCTCCGGATGCAGCACTTCATGGCGCAGGATTACGGCCTCCTGCAGGACATGTTCATCCCGTCGCCGTTCTTGCACAACGACGACGCCAACAACAACAACCACCGTTGA
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| Protein seq | MSGGGGGGEGFPFHDELASLFAERPPNGAMPGMLQQQQPWSFIDYHHHLMQESAPTTPPLDYEAFAGEFDDDVAPLEEVKRELVVDGVGLFPGGGASAAAAAAAVAGPMTPNSMSVSSTSSEACGVGGGAGGDEESAGKCKKEEEGDGGDDDGKEGSSTTKGDGDGEDKNKKGGKGKGKGEKRPRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCPVKKRVERSYQDAAVVITTYEGKHTHPIPATLRGTAHLLGAAAAAHHHGGLQYHHPGHFAAAVGHRLPPQPHDALGGGLLAPPHAQHLHAMQHQMQLAAAAAASGGSLHAAAMQQMPQPDHAGLVAIIASTTGASTTPPPPPATGSAAAATTPLRMQHFMAQDYGLLQDMFIPSPFLHNDDANNNNHR |
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| Function | WRKY transcription factor 28 [UniProtKB/Swiss-Prot:Q8VWJ2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0565900 | OsNip_05t0565900-00 | Chr05 | 28154693 | 28157931 | + | RAP2018-11-26 | ||
| CDS seq | ATGTCGGGCGGCGGCGGCGGCGGCGAGGGCTTCCCGTTCCACGACGAGCTGGCGTCGCTGTTCGCTGAGCGGCCGCCGAACGGCGCCATGCCGGGGATGCTGCAGCAGCAGCAGCCGTGGTCGTTCATCGACTACCACCACCACCTGATGCAGGAGAGCGCGCCGACGACGCCGCCGCTGGACTACGAGGCATTCGCCGGGGAGTTCGACGACGACGTGGCGCCTCTGGAGGAGGTGAAGAGGGAGCTGGTGGTGGACGGCGTCGGGTTGTTCCCTGGGGGTGGTGCTTCTGCTGCTGCGGCGGCGGCGGCGGTGGCGGGGCCGATGACTCCGAACAGCATGTCGGTGTCGTCGACGTCGAGCGAGGCGTGCGGCGTCGGCGGCGGCGCCGGAGGGGACGAGGAGTCGGCCGGGAAGTGCAAGAAGGAGGAGGAGGGGGACGGCGGCGACGACGACGGCAAGGAAGGATCGTCGACGACCAAGGGGGATGGCGATGGAGAAGACAAGAACAAGAAAGGAGGTAAGGGGAAGGGGAAGGGGGAGAAGAGGCCGCGGCAGCCGCGGTTCGCGTTCATGACCAAGAGCGAGGTCGACCACCTCGAGGATGGCTACCGGTGGCGCAAGTACGGCCAGAAAGCCGTCAAGAACAGCCCATTTCCCAGGAGCTACTACCGGTGCACGACGCAGAAGTGCCCGGTGAAGAAGAGGGTGGAGCGGTCGTACCAGGACGCGGCGGTGGTGATCACCACCTACGAGGGGAAGCACACGCACCCGATCCCGGCGACGCTGCGCGGCACGGCGCACCTCCTCGGCGCCGCCGCCGCCGCGCACCACCACGGCGGCCTCCAGTACCACCATCCCGGCCACTTCGCAGCCGCCGTCGGCCACCGTTTGCCTCCGCAGCCGCACGACGCGCTCGGCGGCGGCCTCCTGGCGCCGCCGCATGCGCAGCATCTCCATGCCATGCAGCACCAGATGCAGCTGGCGGCGGCGGCGGCGGCGAGCGGCGGATCACTGCACGCCGCCGCCATGCAGCAGATGCCGCAGCCTGATCATGCTGGCTTGGTTGCCATCATCGCCTCTACCACCGGTGCTTCCACCACGCCGCCGCCGCCGCCGGCGACGGGGAGCGCTGCTGCTGCTACTACTCCTCTCCGGATGCAGCACTTCATGGCGCAGGATTACGGCCTCCTGCAGGACATGTTCATCCCGTCGCCGTTCTTGCACAACGACGACGCCAACAACAACAACCACCGTTGA
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| Protein seq | MSGGGGGGEGFPFHDELASLFAERPPNGAMPGMLQQQQPWSFIDYHHHLMQESAPTTPPLDYEAFAGEFDDDVAPLEEVKRELVVDGVGLFPGGGASAAAAAAAVAGPMTPNSMSVSSTSSEACGVGGGAGGDEESAGKCKKEEEGDGGDDDGKEGSSTTKGDGDGEDKNKKGGKGKGKGEKRPRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCPVKKRVERSYQDAAVVITTYEGKHTHPIPATLRGTAHLLGAAAAAHHHGGLQYHHPGHFAAAVGHRLPPQPHDALGGGLLAPPHAQHLHAMQHQMQLAAAAAASGGSLHAAAMQQMPQPDHAGLVAIIASTTGASTTPPPPPATGSAAAATTPLRMQHFMAQDYGLLQDMFIPSPFLHNDDANNNNHR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.168263 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0665500 | RBH | 0.351489 | 0.307593 | 1.637980 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g49100 | RBH | 0.000000 | 0.103185 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0565900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0027150 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0026940 | RBH | 0.0 | 0.702881 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0026930 | RBH | 0.245949 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0026990 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0026920 | RBH | 0.0 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0438500 | RBH | 0.083658 | 2.5981425 | 0.0177575 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0026580 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0450400 | RBH | 0.2555515 | 7.706409 | 0.051716 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0026760 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0026630 | RBH | 0.081437 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0026830 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0026880 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0026890 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G026360 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0026890 | RBH | 0.0 | 2.582010 | 0.440631 |
