Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_05g0561800 | OGI:05075620 | 5/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr05:27950781-27955317 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACTCAGAAAACCCATTCTTTCAGTGATACTCCTCCAAAGAGTAACATGCTGGGAGCCATACAAAAAGGTTTCTGCTAAATGGTACTAACCACTAAAACAACTTAGCTGCTATACATTTATTCAGTGCAACACTATTATCAACAGAAAACACTGGCTTATCTAGACGCCTAGTTTTTTTTTAGATAAAGGAGATTTCTTGGGAAATTCTCGTTAGATACTTGCACCATAAACATACTAGCAAAAGGTTAAATGACCAGCATGACACTTGGTACAACTATTCCAAGTATCTCGCAATGTGACTTGGCAGCTCGGCGTAGTTCCCTTCCATAGTCAGGAGCTGGTACAAAAGATCCTTGCGCAAGGCAGTAATACTACCCTGCCGATGGAGAATTGAGGAATCATTATTTTCAGGTTACACAAATTGGAGAAAAAAACATAAGGAAATGTATCAACGCCGTGTGCTCACCGAATCTAGACTTCTCTGCAGCTTGCCATCATGGAACTCACGCGAGTAGTATAATGTGTAAAAACCAGAGTTCCTACTGCAGCAGCAAAATGATTTAAATTTGTAATGGGATGAATCTCTCTCTTTTTTCTGTGGCATTGGCAGAAGCCACTCACCTTTGGCTCCTTGGGCTAATCCCTGTGTAGTACGAAAACATCCATTCGTTTGGGTTAATATCCCAGCCGCCATAGAATTTGTTTATACATGTTAACAGGCCTGCGTGGATCATTGTGGCTGTTCGATGGTGCTTACTGCTTAGCACTCACATTGTAAGTCTCCCGCTGCTGCAAGACAGGGTCCAAAATGTGCATTTGCCTCTTCTCCATGTCCCAAATGTAGCATGACCATGTACCGCCAGCTAGTTCAACTGGGGCAATGAGCTGTAGTTTCCACATAAAATGTTTCACTAGCCAATATATGTGATGATCCAAGGAGAATTGATAATAAAAACAAAAAGGCTTGTTTTGTCTTGAAAATCTGTACCAGTTGACAGTTCTGTATTTTGTAGCCATTAACACGTTGATCAAACATGTCACTGACTTCTTTCATGGAACTGAAGTTTGGCTCAATCATCAAAGCTTTATAAAACCAAAATCAAGGGGAAAAGACATCAAGCTTTGATCATTGTTTAACCACGATTTATGTTTTTACAAATGTTGGGGATGTTGGTGTACCGCAAATTGGGGTGGGAAGAAGTGGCGCCAACGCTGTCCAGATGGGTTTGTATTCATCTTGGCATCTAACTGTTGGTAGAGTCTGATAAATGCCGAACAAAGGTCCATACATAGATTGCCACCGTGGGTGACCTGCATTTTGAGCTTCATGGCACTTATCTCAATTGGTGTAGGCTTGTCGTGCTTGAACCAAACCCTTCATATAGGATAAACAATTAATAAGCAACACAAAGTTTATTTGTAATGAAAATTCACACATTTTTAAAGATTGTTTTTCACAGACCCGGTTATATCTTCATCACGTGACTTCAACTCCAGCCAACGGTACAACCTCCGAGCTAATTTAGCATTTGGCCATTCGTGAAGTATGGGCATTGAAAACGGTGACATGCAAGCTGGCCTTGGACATGCCACCTCTTTCGTCATCTGTGTCTCGCAATGTTCTGGTTGTCGTTGGCACGTGACAACCGCGAGGTTGTCATCGTTGCTTTGATCCAATGTGGCACTGGCTCCTGCAACATAAAACACGACAGATGCATTTCATTCTCTAAAGTATGCGTGGGGTGGGTTGAAGGATATGAGGCATGTATGCGTACTCATGGTGGCTTCTCCCACAGCTGCTGCTGATACCAACCATTCAAGGCCACATTTGTCTTGCATTTGGAATCCTGCATTGTGGGGAAAAAAATAGTCCCATTACTGCACAAGTATTCAAGTATTCAGTGTTTTTACTCTTTTTTTGGCAAGCTAACCTTGATCCAGCTCATGGTGGACTGCTGCCGTCACTTGGGCTGATGAGTTCAATGGACGGTGATGCGCAGTAGGGGCCATGCCCAATATCGGATTTGCATGGTCAACAGCTTGATAGCTTTGTTGGTCTATATGCTCGCTTGCTTCATTTTCCGAGTTGCTTGGCCCTAACAAGTCACCTGTGAATGTGATTCAAATGTTTGTGTCATGAGTATATATGCAGTGGAAAAATGCAAGAGATTTGATTTTCTTTTACAGTTTACAAATTGGGCTTCGCTTATTTGACATCTTGGCTTATTGCCATAGACTCAGTCGGTCCCATAAGTCATTATCACAAGTGTTAGTACCATCAAAGTGGTAGCGAATAGTGTGAAATCATCAAATTTTACGGAAAAGTGCAGCACCATGTGAAACGAAATACCTCTCAAATCAACGGGGGCTTGGGATCTATTGGCTGCAGAAGCCACGCGTGACAACTTGCTTCGTTTACGAGTAGTCTTGGCACCTTCTTCGACATGCGGGTGGACAGGAATTGTAAGTGTTTTTCACTTTGAAAATATATTATAACCTTTACTAATGGAACCAAATGGTCACTGATAGGCCCAACGAAAAATGGTACTGCTAGTAAACATACTGTTAATGTGTGAGCTTACCGTGTAGTCATGCAGCTTTTCGCTTTGCTGCTGCCTGCACATCGGCAGCATCCGCATCTTCGATTCCACGATGTAATCGAGCATTCACTTGAGCGTGCTCTGCCTGGATGGCTTCCATTACATCTGAAATAACGAGGGTGAATTCCTCACTGTGTTTCGAGGCCAATGCCTGCATGACTTCTTGCGTTTCCTGAGTTAAAATTTTGATTTCTCTCATAGCCTCATCCAACAGCTGCGCGCATCGTTCGGCAAGATGACGTCCCAAATCCTGCAAGGGCAGCTGCTATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAGGTCGTGACAGGATTACTTCTAGAATCGATTTAGTAAGCTTTTGCTTGGGATGAAGAGATTAGCGGCGAACCTTGGCAGGCAGGTCGTTCAGGCCATGGCTATCGCTATTGCTCGGGTCAGTGTTATCGTCCTGAGTATCACTTCGAGCTATACATTTGCCCTTCATTGATGCAAAAAAAGAAGAAAAAAAGAGAAGAAGAACAGAGTAAATAACATTTTTACGCTTCAAAAATCAAAACACTCTTGGCTTTGATCAGCATCTCGATGTAATCCCTAATATAATACTCCCTTGTTCCAAAAGTCTAAGACCTACTCCCTCCATTCTAAAATATAAGGCACAACCACTCTTAACCCAAAGACCAAGAAATAATTATTATCATCTCATAGATTGGGTTACCTTAATAAATAGAAAGCATGCACCCAATAAAATTAGAGATCTTATGGTGTAGGATTTAAATAATAATATTTTAGTAAAAAAGAGGTGCTAGCTAATGACATGCATGCCTTAGAGCAAGTTTAATAGTATAGCCCACTACTGGCTCCAATCCATATATAGCCAATCTAAAAGCCAATTCATACAATAGTTGCTTACTATACTATTAATATATGGTCCCATATGGCATACACACATTGCGTCTTAGAGTCCGTGCTGCAGCTGGCTACAGATCTGTAGCCCGCTGCTCTTCTCTCTCATGTTTTATCTCATTAAAATATATTTGCAGCTGGCTAATAGTCTGCTATTGTACCTGCTCTTATATTATGAAACAACTTTAAGAAGTAGTTGTGCCTTATATTATGGAATGGAGGGAGTATTTCTTTTTACACTAAGACCAATGTGTAGTTAACTCATGTGATAGAACCAATAAACATGCAACCAATAAATACTAAAATAATTTCTTGAATTCCGATAAAAAAATCAATATAGCACATAGTGACTATAAATAGGAGTTGGACTTTTAGGAAAACTATAGAATGAAATATAGGACTTAGACTTTTATTTTTAGAGCAGATACAATAGCAGGCTATTAGTTAGCTGTAAACATATTTTAATGAGATGAAAGATGAGAGAGAAGAGCAGCGGGCTACAAATCTGTAGCCAACTGTAGCGCGGAATCTAAGACGCAATATGTGTATGACATGTAAGACCATATATTAATAGTATAGTAAGCAACTATTGTATGAATTAGCTATTAGATTGGCTATAGATGAATTGAAGCTAGTAGTGGGCTATACTATTAAACTTGCTCTTAGAAGGAGGGCTTTTTTTTTTGTGAATGATGCATGCCGTAATGAACCATATTTTGCTTGAAAGCAACACATATAGTTCATCTAGGCGGAAATAAAAGAAACTCAGTAGGAGTACAAAAAATGCAGGAAGCGGCGGAGCGATGAGAAAAGGGATATTGCCACCTTCCTAAGGCTCGTCGACGCCGGCGGGCCGCGTTGGCCGCGAGCAGAAAAGGTTGGGTGGTGAGGAAGCGGCGGGGAAGACGGTGGCGATGGCGATCCCGACGGTCCGACCCTCCATCGGTGGGAGTGGGAGGATGGGAAGGGGAACCAGTACTGGAGCTGGAGTAGTACTCCATATTGTAGTCCAAAGAACAAGTGAAGAAGACTGAGAGAAGGTAGTACTACAGT
More
|
||||||||||
| CDS seq | ACTGTAGTACTACCTTCTCTCAGTCTTCTTCACTTGTTCTTTGGACTACAATATGGAGTACTACTCCAGCTCCAGTACTGGTTCCCCTTCCCATCCTCCCACTCCCACCGATGGAGGGTCGGACCGTCGGGATCGCCATCGCCACCGTCTTCCCCGCCGCTTCCTCACCACCCAACCTTTTCTGCTCGCGGCCAACGCGGCCCGCCGGCGTCGACGAGCCTTAGGAAGGGCAAATGTATAGCTCGAAGTGATACTCAGGACGATAACACTGACCCGAGCAATAGCGATAGCCATGGCCTGAACGACCTGCCTGCCAAGCTGCCCTTGCAGGATTTGGGACGTCATCTTGCCGAACGATGCGCGCAGCTGTTGGATGAGGCTATGAGAGAAATCAAAATTTTAACTCAGGAAACGCAAGAAGTCATGCAGGCATTGGCCTCGAAACACAGTGAGGAATTCACCCTCGTTATTTCAGATGTAATGGAAGCCATCCAGGCAGAGCACGCTCAAGTGAATGCTCGATTACATCGTGGAATCGAAGATGCGGATGCTGCCGATGTGCAGGCAGCAGCAAAGCGAAAAGCTGCATGA
More
|
||||||||||
| Protein seq | TVVLPSLSLLHLFFGLQYGVLLQLQYWFPFPSSHSHRWRVGPSGSPSPPSSPPLPHHPTFSARGQRGPPASTSLRKGKCIARSDTQDDNTDPSNSDSHGLNDLPAKLPLQDLGRHLAERCAQLLDEAMREIKILTQETQEVMQALASKHSEEFTLVISDVMEAIQAEHAQVNARLHRGIEDADAADVQAAAKRKAA |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0561800 | OsNip_05t0561800-01 | Chr05 | 27950781 | 27955317 | - | RAP2018-11-26 | ||
| CDS seq | ACTGTAGTACTACCTTCTCTCAGTCTTCTTCACTTGTTCTTTGGACTACAATATGGAGTACTACTCCAGCTCCAGTACTGGTTCCCCTTCCCATCCTCCCACTCCCACCGATGGAGGGTCGGACCGTCGGGATCGCCATCGCCACCGTCTTCCCCGCCGCTTCCTCACCACCCAACCTTTTCTGCTCGCGGCCAACGCGGCCCGCCGGCGTCGACGAGCCTTAGGAAGGGCAAATGTATAGCTCGAAGTGATACTCAGGACGATAACACTGACCCGAGCAATAGCGATAGCCATGGCCTGAACGACCTGCCTGCCAAGCTGCCCTTGCAGGATTTGGGACGTCATCTTGCCGAACGATGCGCGCAGCTGTTGGATGAGGCTATGAGAGAAATCAAAATTTTAACTCAGGAAACGCAAGAAGTCATGCAGGCATTGGCCTCGAAACACAGTGAGGAATTCACCCTCGTTATTTCAGATGTAATGGAAGCCATCCAGGCAGAGCACGCTCAAGTGAATGCTCGATTACATCGTGGAATCGAAGATGCGGATGCTGCCGATGTGCAGGCAGCAGCAAAGCGAAAAGCTGCATGA
More
|
|||||||
| Protein seq | TVVLPSLSLLHLFFGLQYGVLLQLQYWFPFPSSHSHRWRVGPSGSPSPPSSPPLPHHPTFSARGQRGPPASTSLRKGKCIARSDTQDDNTDPSNSDSHGLNDLPAKLPLQDLGRHLAERCAQLLDEAMREIKILTQETQEVMQALASKHSEEFTLVISDVMEAIQAEHAQVNARLHRGIEDADAADVQAAAKRKAA |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.038946 | 0.157625 | 0.469304 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g48790 | SBH | 3.146749 | 3.624117 | 0.215465 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0561800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0026880 | RBH | 0.134847 | 0.0 | 0.299342 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0026660 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0026650 | SBH | 0.0 | 0.0 | 0.114784 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0026730 | RBH | 0.064353 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0026660 | RBH | 3.711885 | 0.0 | 3.816886 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0026300 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0447100 | SBH | 28.4320965 | 86.8412205 | 41.981211 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0026480 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0026370 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0026560 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0026610 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0026610 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G026090 | SBH | 0.0 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0026610 | SBH | 0.0 | 0.0 | 0.000000 |
