Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_05g0526600 | OGI:05070640 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr05:26186333-26187544 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCGCGGCACGGCGCGCGTCCTGCACTCCAGCTCCGCGCCATAACTGCGATCCCCTCCTCCTCGGCCTCCCCCTCCTCACCGGCAATTAATGCCGCCAACTACCAGATCCACCCCTCCGGAAACCTAAAACAAAATACCCCTCTTCCCGTTTTGCCCCTCCTCGGCTCTTCTCCCACCCCAGCCGCGCCCCCCCGCACGCCATGCCATTCCGCCCCACGGTCTCGCCGCCGCCACCGCCGCCGCCGTCATGGCGTCGTTCCTCGACTCGTTCTCCTCGCTCGGCGTCGGGTACGCGGTCGCCATCGCGCTCGGCTTCCTCGTCCTCCTCGCGTCGCTGCTCCTCGCCTTCTACTTCTGCTCCCGCCGCGGCGGGGCCGGGGTCGTCCGCCGCGGCGGCGGCCAGGGGGTCCACTCCGCGCGCCACGCCGTGTCCTCCGCGTCCAGCTCCGGGCACATCTCCATCACCGTCCCGCGGGTCATCTTCGTCGCGGACGACTCCGACTCCCCGGGCTCCTCGTCCCGCGGCGGCGCCGGGGGCGGCGCGGCGTCGTCGCCCGTCGGGCTCGACCCCGCGGTGATCGCCTCGTACCCCAAGGTGCCCTTCTCTAGGGCGGCGACGGGGGCGGACGCCGAGGCCGCGTGCTCGATCTGCCTCTGCGAGTACAAGGAAGGGGAGATGCAGCGCATGATGCCCGAGTGCAGGCACAGGTTCCACCTCATGTGCCTGGACGCGTGGCTGCGGCGGAGCGCGTCGTGCCCGGTCTGCCGGTCCTCGCCCATCCCCACTCCAGTCTCCACTCCGCTCGCCACCCCGCTGTCGGAGCTCGTCCCGCTATCACAGTACGCCGCCGACCGCCGGCGCCACAGGTGACGGAATTGGGTGCATCATGTCTTCTCTTCTATATTCGTTTTTTGGCACCATTTTCTACTGGTTATCAACGATGGGATGGTGTATCCATTGTTTTATTGTTCAGATGAGGTTTGGCTGATCCATGGCAATATTAGTATATTTAGCCATTTAGGTGAGATTGTGGACTAGGACAGCCTTGACTTTGAGGAAGTTTTGCTTAGTAGCAGTAGATCGTTGCACTGAAGCAGACATGCAGTGTATATACATTGTTTTTTCCATTCGGATATAGTAGCTTTTACCAAGTAAGGTTACTTGCCCTACAGTTGTATGTGCAAGATCAATATCTGAATTGCTTCATTCCA
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| CDS seq | ATGGCGTCGTTCCTCGACTCGTTCTCCTCGCTCGGCGTCGGGTACGCGGTCGCCATCGCGCTCGGCTTCCTCGTCCTCCTCGCGTCGCTGCTCCTCGCCTTCTACTTCTGCTCCCGCCGCGGCGGGGCCGGGGTCGTCCGCCGCGGCGGCGGCCAGGGGGTCCACTCCGCGCGCCACGCCGTGTCCTCCGCGTCCAGCTCCGGGCACATCTCCATCACCGTCCCGCGGGTCATCTTCGTCGCGGACGACTCCGACTCCCCGGGCTCCTCGTCCCGCGGCGGCGCCGGGGGCGGCGCGGCGTCGTCGCCCGTCGGGCTCGACCCCGCGGTGATCGCCTCGTACCCCAAGGTGCCCTTCTCTAGGGCGGCGACGGGGGCGGACGCCGAGGCCGCGTGCTCGATCTGCCTCTGCGAGTACAAGGAAGGGGAGATGCAGCGCATGATGCCCGAGTGCAGGCACAGGTTCCACCTCATGTGCCTGGACGCGTGGCTGCGGCGGAGCGCGTCGTGCCCGGTCTGCCGGTCCTCGCCCATCCCCACTCCAGTCTCCACTCCGCTCGCCACCCCGCTGTCGGAGCTCGTCCCGCTATCACAGTACGCCGCCGACCGCCGGCGCCACAGGTGA
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| Protein seq | MASFLDSFSSLGVGYAVAIALGFLVLLASLLLAFYFCSRRGGAGVVRRGGGQGVHSARHAVSSASSSGHISITVPRVIFVADDSDSPGSSSRGGAGGGAASSPVGLDPAVIASYPKVPFSRAATGADAEAACSICLCEYKEGEMQRMMPECRHRFHLMCLDAWLRRSASCPVCRSSPIPTPVSTPLATPLSELVPLSQYAADRRRHR |
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| Function | RING-H2 finger protein ATL68 [UniProtKB/Swiss-Prot:Q9M313] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0526600 | OsNip_05t0526600-00 | Chr05 | 26186333 | 26187544 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCGTCGTTCCTCGACTCGTTCTCCTCGCTCGGCGTCGGGTACGCGGTCGCCATCGCGCTCGGCTTCCTCGTCCTCCTCGCGTCGCTGCTCCTCGCCTTCTACTTCTGCTCCCGCCGCGGCGGGGCCGGGGTCGTCCGCCGCGGCGGCGGCCAGGGGGTCCACTCCGCGCGCCACGCCGTGTCCTCCGCGTCCAGCTCCGGGCACATCTCCATCACCGTCCCGCGGGTCATCTTCGTCGCGGACGACTCCGACTCCCCGGGCTCCTCGTCCCGCGGCGGCGCCGGGGGCGGCGCGGCGTCGTCGCCCGTCGGGCTCGACCCCGCGGTGATCGCCTCGTACCCCAAGGTGCCCTTCTCTAGGGCGGCGACGGGGGCGGACGCCGAGGCCGCGTGCTCGATCTGCCTCTGCGAGTACAAGGAAGGGGAGATGCAGCGCATGATGCCCGAGTGCAGGCACAGGTTCCACCTCATGTGCCTGGACGCGTGGCTGCGGCGGAGCGCGTCGTGCCCGGTCTGCCGGTCCTCGCCCATCCCCACTCCAGTCTCCACTCCGCTCGCCACCCCGCTGTCGGAGCTCGTCCCGCTATCACAGTACGCCGCCGACCGCCGGCGCCACAGGTGA
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| Protein seq | MASFLDSFSSLGVGYAVAIALGFLVLLASLLLAFYFCSRRGGAGVVRRGGGQGVHSARHAVSSASSSGHISITVPRVIFVADDSDSPGSSSRGGAGGGAASSPVGLDPAVIASYPKVPFSRAATGADAEAACSICLCEYKEGEMQRMMPECRHRFHLMCLDAWLRRSASCPVCRSSPIPTPVSTPLATPLSELVPLSQYAADRRRHR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0736600 | RBH | 0.0 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g45060 | RBH | 0.0 | 0.0 | 0.121129 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0526600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0024310 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0024200 | RBH | 0.0 | 0.522167 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0024190 | RBH | 0.464329 | 0.0 | 1.457556 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0024140 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0024220 | RBH | 1.154174 | 1.638849 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0404600 | RBH | 0.7809585 | 7.4804285 | 3.033741 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0023790 | RBH | 0.0 | 0.0 | 0.267700 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0416800 | RBH | 2.4397495 | 4.413528 | 6.4136565 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0023960 | RBH | 0.0 | 0.193608 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0023870 | RBH | 0.0 | 2.058227 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0024060 | RBH | 2.597271 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0024060 | RBH | 0.721751 | 0.0 | 0.321272 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0024110 | RBH | 0.0 | 0.462211 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G023490 | RBH | 0.0 | 2.977704 | 1.138584 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0023890 | RBH | 0.515272 | 4.372847 | 1.736538 |
