Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_05g0525900 | OGI:05070600 | 3/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr05:26171097-26172343 | ||||||||
| Gene Symbol | C3H37, OsC3H37, OsTZF7, OsCCCH-Zn-1 | ||||||||||
| DNA seq | AACCACAGGAAGATAGATAAAAAAAAGCATCGAATTTAGCATAATTAAGTACATCAAATGTGATAATATCACGAAACAGGCAGAGGCTATTAGCATATTACACTCCATATCTACACTGGTAGATAATAATAATAATAATCGAAAAGCAAGGGTGCTACTAGCTCCCCAAGATTTTCGAAAAAAAAAGGCAGGCAAACGCACGCCACACTTACAGTTACGGATTGCTGTGTTCAGATTAACTTGCACCATATTTGTTTATGTACAGAAGAATGATGCAATTTGCGAAATGATCATCGAATTGAAGTGAACTTAATTAATGAAGCTGTTCTGCGAGGCGCCTCTGCATCTTAATCGTCGCCGCCGAGAGAGATGATGTCTTTGAGCTTGTCGGGTGCTTCTACATCACAAGCTCGGACACCCACCCGAAATCCGGCCCGTCCTCGTCCGTCACCGGCGGTAGCACCGGCGTTACGGACGATGCCGACGGCCTCACCTTCCGGAGGCCGAGCTCCCGCATTGCGAACATCAACTCTTCCATCTCCGCGTCCGCGTCGCATTCATCGATGCCGTCCACCCACCTCCGCCCCTCCACCGGCGACACCGGCGGCGACTCCCAGAGGGAGGCCAGGGTCGACTTGGGGGAGAGCGACAGCGGCGAGTCTTCCTTGGACCCGGCGCGGAGCTCGCCGGCGGTGTGCGCGAAGAAGCAGACGCGGCGGCGGCACGCGACGCCCGCGCGGCACGGCCGCGTGCGGTAGCGCGACGGGTGGAGCCAGAGCTCGAACGTGCCGTGCGCGAACGGGCACGTGCTGCCCCTCGGGCACGCGGCGCCCGGCCGGCGGCGGAAGTCCGGGCACGGCTCGCCCGTGTACGCCACGCGCCTCGGGTCACGCCGCCTCGCGGCCTCGCCAGGGTGCGCGTACGGGCACGCCGTCCAGTCGTGGCTCCGCGCCCGCGCGCACCGCCGCACCTTGAACTCGTACATCATGAACTCATCATCAGCCTCCGCCTCGGCGTCGGCCTCGGCCTCCCCGTCGCTACGCCTGGCGGACAGGTACTCACCCAGCGCGGCGAGGAGCTCGGGCGGGATCTCCACCGCAGCGGGGTCAGCCCAAGAGACGGCCAGCGCCGCCGGGTCGAGCAGGAGGTGCTCTCGGCTCGCCATGGTGCTCACTACTCACTCACACTACCTTGTCCACTCCCAACACCACCGAAGAAAAAAAAAAGAGGAAACTGTACTTTGAGGT
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| CDS seq | ATGGCGAGCCGAGAGCACCTCCTGCTCGACCCGGCGGCGCTGGCCGTCTCTTGGGCTGACCCCGCTGCGGTGGAGATCCCGCCCGAGCTCCTCGCCGCGCTGGGTGAGTACCTGTCCGCCAGGCGTAGCGACGGGGAGGCCGAGGCCGACGCCGAGGCGGAGGCTGATGATGAGTTCATGATGTACGAGTTCAAGGTGCGGCGGTGCGCGCGGGCGCGGAGCCACGACTGGACGGCGTGCCCGTACGCGCACCCTGGCGAGGCCGCGAGGCGGCGTGACCCGAGGCGCGTGGCGTACACGGGCGAGCCGTGCCCGGACTTCCGCCGCCGGCCGGGCGCCGCGTGCCCGAGGGGCAGCACGTGCCCGTTCGCGCACGGCACGTTCGAGCTCTGGCTCCACCCGTCGCGCTACCGCACGCGGCCGTGCCGCGCGGGCGTCGCGTGCCGCCGCCGCGTCTGCTTCTTCGCGCACACCGCCGGCGAGCTCCGCGCCGGGTCCAAGGAAGACTCGCCGCTGTCGCTCTCCCCCAAGTCGACCCTGGCCTCCCTCTGGGAGTCGCCGCCGGTGTCGCCGGTGGAGGGGCGGAGGTGGGTGGACGGCATCGATGAATGCGACGCGGACGCGGAGATGGAAGAGTTGATGTTCGCAATGCGGGAGCTCGGCCTCCGGAAGGTGAGGCCGTCGGCATCGTCCGTAACGCCGGTGCTACCGCCGGTGACGGACGAGGACGGGCCGGATTTCGGGTGGGTGTCCGAGCTTGTGATGTAG
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| Protein seq | MASREHLLLDPAALAVSWADPAAVEIPPELLAALGEYLSARRSDGEAEADAEAEADDEFMMYEFKVRRCARARSHDWTACPYAHPGEAARRRDPRRVAYTGEPCPDFRRRPGAACPRGSTCPFAHGTFELWLHPSRYRTRPCRAGVACRRRVCFFAHTAGELRAGSKEDSPLSLSPKSTLASLWESPPVSPVEGRRWVDGIDECDADAEMEELMFAMRELGLRKVRPSASSVTPVLPPVTDEDGPDFGWVSELVM |
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| Function | Zinc finger CCCH domain-containing protein 37 [UniProtKB/Swiss-Prot:Q65X92] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0525900 | OsNip_05t0525900-01 | Chr05 | 26171097 | 26172343 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCGAGCCGAGAGCACCTCCTGCTCGACCCGGCGGCGCTGGCCGTCTCTTGGGCTGACCCCGCTGCGGTGGAGATCCCGCCCGAGCTCCTCGCCGCGCTGGGTGAGTACCTGTCCGCCAGGCGTAGCGACGGGGAGGCCGAGGCCGACGCCGAGGCGGAGGCTGATGATGAGTTCATGATGTACGAGTTCAAGGTGCGGCGGTGCGCGCGGGCGCGGAGCCACGACTGGACGGCGTGCCCGTACGCGCACCCTGGCGAGGCCGCGAGGCGGCGTGACCCGAGGCGCGTGGCGTACACGGGCGAGCCGTGCCCGGACTTCCGCCGCCGGCCGGGCGCCGCGTGCCCGAGGGGCAGCACGTGCCCGTTCGCGCACGGCACGTTCGAGCTCTGGCTCCACCCGTCGCGCTACCGCACGCGGCCGTGCCGCGCGGGCGTCGCGTGCCGCCGCCGCGTCTGCTTCTTCGCGCACACCGCCGGCGAGCTCCGCGCCGGGTCCAAGGAAGACTCGCCGCTGTCGCTCTCCCCCAAGTCGACCCTGGCCTCCCTCTGGGAGTCGCCGCCGGTGTCGCCGGTGGAGGGGCGGAGGTGGGTGGACGGCATCGATGAATGCGACGCGGACGCGGAGATGGAAGAGTTGATGTTCGCAATGCGGGAGCTCGGCCTCCGGAAGGTGAGGCCGTCGGCATCGTCCGTAACGCCGGTGCTACCGCCGGTGACGGACGAGGACGGGCCGGATTTCGGGTGGGTGTCCGAGCTTGTGATGTAG
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| Protein seq | MASREHLLLDPAALAVSWADPAAVEIPPELLAALGEYLSARRSDGEAEADAEAEADDEFMMYEFKVRRCARARSHDWTACPYAHPGEAARRRDPRRVAYTGEPCPDFRRRPGAACPRGSTCPFAHGTFELWLHPSRYRTRPCRAGVACRRRVCFFAHTAGELRAGSKEDSPLSLSPKSTLASLWESPPVSPVEGRRWVDGIDECDADAEMEELMFAMRELGLRKVRPSASSVTPVLPPVTDEDGPDFGWVSELVM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.602347 | 2.281693 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0738400 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g45020 | RBH | 0.0 | 0.401586 | 0.582216 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0525900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0404200 | RBH | 7.0519325 | 17.263965 | 179.868805 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0416400 | RBH | 8.247407 | 26.1955555 | 18.7059125 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0006300 | SBH | 0.213799 | 0.000580 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
