Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_05g0509700 | OGI:05068310 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr05:25254820-25259747 | ||||||||
| Gene Symbol | SSB | ||||||||||
| DNA seq | CGACAGAAAAAGACGCTGCATTTGCGAGTTGCGACACGAGCAGTTAGGCTGAGCGCATCTACCCCGTGTACCAAAACAACGAGAATTCATCGTTACATCGTCGTGTTGTCGTGACAAGACGTATAGCCACCAAAGCAATACGTTCCCAACACATACACACCATGACACTACTGTAAATTTGACTGCTAAGATGTTAATCAAGAGTACATTAAAGGATGTTGATAATGAAAATACGACTGGAAGGGCGGCCAGGACAAGGTTCACATGCCTGCTACAACAAATTTCGCTTCGGTGAAGCAGCATCGTCGTTTTTCTTTTCTTTGAGAGGCCAGCATCATCGTTGAGCCTGCACGTATCCACTTTATCTTTTGAACCTAATAATGCACAGATAAACAGGTTACGACCTGCCCAGAAAAGTATATACGTACAAACGAAGGCGATGCGACTAATATTAGGAGTGCGACATTTCAGTAATCAACCTAAACAAGGTTGTTGCGTTAGAAACCAGGTGTCTGACATTTCTAGTATATATCACACATATTAGGCATGTAACAACCTTTAAAGACATCATCATGTAAAGACTTATATAAAACAAAATCATTGAAATTTATACTGTCGTAAAAGGATAAGCTAATGTGATGGTGATATGCCCCCACTCCTTCACTAAAGGTAGATAAGCTTGTGTTGTGTTCTTTGTAATGTGCATATGTAGATGGCTAATTGACCGCATGTGATCAAGTATACAATTTTTAGATATGGGAATAACTTTTCTTTTGCATTTTCATTTGGATCTTATAGCATGTTTATTTGTCATCCATCGTGCGTCTTCACACAGGAAAAACAAAACTGTACTAGCTAATTCAGGCTATGGGAACCTGCTCCTGCCTTTACCTTCAACACAGTTGCAGTCATGTGAACTACGGTTTCCTATATTTTTACCTAGGAAACTGGTAGGCATCAAAAAAATCATATTATCTTTCTTATTCTTTCACGAGGTAGTACACTGTTGAAGATACTATGGGTCTGGGCAAATCTCAAAATTTCAATAACATACCAAGCTAAACAAGCCAATCCAAAAGGAAGGAGAGGTCTACAAAAATTATCCACACAAGCAGCAACCTAGTCCTGAACTCCATACTGTTTCCTTCTATTTGCCTTCTCCCACCTTCTTTCTCCTTCTCTACTCCCATGCATCTACTATTGTTCTTTTAGTCCTCTTTCCATCAGGCATCAGCATTGAAGATGGACATTGAATCAGTGAGGTGTGCGTGCTGTGGCCTGGAAGAGGATTGCACCCAGGAATACATAGAGAATGTCAAGGCAAACTTCGGAGGGAAATGGCTTTGTGGCTTATGCTCAGAGGCGGTAGGGGATGAGCTCAGTAAAGACAGAAGAGAACAGGATGGCATCGAAGATGCTATCAAAGCTCATATGGCATTCTGCAGGATGGCACTATCAAGCCCTGCAGTCAAGGTGGCGGATGGCATGAAGGAGATGCTCAGAAAGAGGTCAAAGGATAAGGTAAAGCCTGAAATACCATCAAAAGCACACCCATTCTTACTTGGTGACAATTGACAAGGTTCCAAAGCGAAGAACATCAGAATTATGCTTTTAGATAAGGGTGTGACTGATGTAAGATTTCTCTCAACCTACTCAACAGTTAATTTACTAGTATTACCTTTTATATTCCCTGGCAACATGTCAAGTGTAAATACAATTTGGTCATATGAATAAGTTTCAAGATCACAACATTTCAGCATGAAGATCTACAAACTTCGTTGACAAGAGATACTATGCTTTTGTGTGAACATGCAGGTTATCCTGTGTTCTTCTTCGCCACTCGAGAATATTTACTCAGAGGTTTGTTTCTCACCTAATTGATTTTGATGATCTATGATGAAAATTAATAATGACAAGTGATCACTTTTATTCCACCAACTAGAGACTAGTTATGGTTCAGTGTCTTACATTCTTAAAATCATTGAACAAATTGGCCTAAGATTGTCACTGTGCAACTATTCATGTACAAATACCCCAGGGAGAATCTATCAGCAACATGTACAAATAGAGTGAAGAAATATAAATAGAATTAGGTACTCTACCATTCCAGGTTTGTAATATTTGATTCGCAAGATCCGTGAATCTATGACATTTCTTATAATTTGTAATCACCCTTATGTAACAAGCTGAAGTTGTAACAACATATTTCATTAAGATGAAGACGCGATACAAGTAAAATACCACGCTATGAGAAACTTATGAAGAAATGAGCCTGGTAAAGGCATCAAAATATCACTTTCTACTGAAAGATAGCACGAGGCACCAATCAATGACAGATAAGTATTGGCAGGGAAATGCTTGATTGAAAGCTGAAGGTGTTCTACAGATAATTCACAATATGCACATTTCAAGTTCAAATTAATAAAAAACACATGACCCACAGCTAACAGGGTGCATGGACACTTCTTAGAAGTCAAAATCCTAATACTGTTAAAACAATCAACAAAAGAGTTGAAACATGCCTGTACTCCTGGCCTGCTTGTGCTGAGATCTTTCAAACTAGAACAATCCTTCTCCTGCATACAAAGGTTGTCATGATTAAATGGTAAATACTAAAATCTAAAACACTGGACATCTGCATGCAGATAATTGTGGAGACCAATCATAGTTGCATAATCACAACAAATACAAGTAATGCAAGATTCTCATAAATCAGAATATTAAGGTTTTCAGTGAACTTACTTAGCTCATCTAATGAAATGCTAGCAGCACTCTCGCCAGATTTAATCAGCCGAATCTTACCTGTACATATAAATATTTTTCCAAGGATAAGCTTTTACAACAACAAAGACAATCAAAATAAATAAGTACAAAAGAATAGCTATCAACATTACTCAAATGCAGTATAATTAAACAAAGCAGCAGGCTTCTGTGTCCAGTTTGGTAACAGAGTTATGGAGTTACCCCGAGAAAATTGTTCAAACTTCAAACGTTATTTATTCTTGCTATAAAATATTACTACCACAAAGTTTCTAGTGGAATGGCAGATCAACATACCATCGCGTCGAAGACAAATCTCTGGTATATTTTTCACTTGATCATTAATGCTGTCATTGTATACTCTGGTTTCAATATCACCCTCAACATAAACTGCAGAACTGAAATAAGGCAAGAACAAAGACAGCACCAACCACAGTAAAAAAGAATTTCAAGCCATAGAACTAGGAAATGGTATATAGTTGTATACTTGTATGGAGAAAAGAAAAAGGGTGATCTTCTCACTGAAACCACGTACTTCTTCACCAGCTTCTGGACAGCAAAAGCACCTAGCTGGTCATTATGAATGGCTATCCGATGCCACTGAGCTGGCTTTGGCAGATCTGCATCCCCTACTACCCTCTGGTCAAACATGCCACCAGTTCCAACTGTAAAAACAGTCACTGTACGACCATTCCTTAAAATTTTCTGCACAGGAACCTGTCCGACTTTTCCGCATATTATAGCCTAGAAAGTTGAAACAATCAATTAATACCAAGTTAAGCTTGAAAACCAAAACATGAAGTATCCTTTTCATATTATACTTAAATACCCTGTGAACACCACGGAATCCCCAGCCCTTCTTGGGGTCTACGCTTTGGGGTTCTAACTCTCGTCTTGAATCTGTATAATCATCATCACCTCCCATTTCACTCTTCTCATCAATATCAGAAAAGGAAACAGTAGAACTCCAAGCTTGAGATTTTCTGTAGAAATCTACACAGACAAATATTTAATCAAAACTTACTCAGTAAAAACTGAGTAGAAATCTTGAAACAACCATGAAAAACAACCCACCAATTGGTTTTCTCTGCTGTTCTAAGACCCTCCTCAAGCCCTTCAGTAATCCATTGCTGAGAGAATTCATGGTAAATCTACGCACATTGAGGAAAAACGTTAAATAATAAAATCATAAAAATAATCATCAGAACATATATTTTTTTCCTATTCCTTTAATGGATTTCAAAACAACATAAACATCACAGTCGTCAACTTCATTCAACATTTTCCTGGTAGCAGTTCTATTCTCAAAAGCATTTGTTCAGTGTGACCTTCTACAAGGAAAAAACTACATGAGGAAATAAGGTGCATCAGGATGGCCTATCACGTGGGAGACACTTATTCTTTATGATGAGGCATCCCAGGTTTGTCTCAACAGTGCAGAGGAGTTCCATGACAGTTCTGCTTATTCTTTCCTGCACAAAAACAACTTATGGTCTTATTCAGCTACAGCAGCTCCATTCCGTTGGAACCTCAGGGACGACATCCGGCCAAGACAAGGAAGCTGCTCTACCTGCCTAAGCGGCTGATCCGCCTAGCTAAGCTGCAGCGGCATTCTAGGATCGTAGTATCCAATAACCACCCTCTTCAGGAGGCTGAATTAACACCACCTAAAATCTAAATAGGCAATCACAGAAAAATTAACAGCCTACTGGACTAAACTTTGCATGGATAAAATATGCAAACGGTCCAAGATATTCTACCGAGACATTTTAACAAACACCTTGCAAGCATCGCACACTGGCCATTCAGGGGCTTCACGCGACGTCGACAACAGTTGCATACCCCATAGAACAGTGGCAGACCCAGCCCAAAATGGAAAACTGCAGCCATGGCAGAGTTGGAACAGTAGAACGAGCTCGGGAAAAGGACGTACCTTCAGCCCCGCGCCGGAGGCCTTCGCGCGTCGCCGAGTCGCGGGAGGGATAAGACGGCGGGACGACGACGACGGGCGCAGACCGAGCGAGCGGGGAGGCTATCCGTACGGATCGAGGGAGGATGGGAGGAGGCGGCTGGCGGCGTTGGGTGGTGTCCGGTGGAGTCGGCCGCGGCGGCGCTCGTGCCTGGGTGGAGCGGAGGAGCTTCGTAGCGAGATCAAAAGGTTGAGTTAT
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| CDS seq | ATGAATTCTCTCAGCAATGGATTACTGAAGGGCTTGAGGAGGGTCTTAGAACAGCAGAGAAAACCAATTGATTTCTACAGAAAATCTCAAGCTTGGAGTTCTACTGTTTCCTTTTCTGATATTGATGAGAAGAGTGAAATGGGAGGTGATGATGATTATACAGATTCAAGACGAGAGTTAGAACCCCAAAGCGTAGACCCCAAGAAGGGCTGGGGATTCCGTGGTGTTCACAGGGCTATAATATGCGGAAAAGTCGGACAGGTTCCTGTGCAGAAAATTTTAAGGAATGGTCGTACAGTGACTGTTTTTACAGTTGGAACTGGTGGCATGTTTGACCAGAGGGTAGTAGGGGATGCAGATCTGCCAAAGCCAGCTCAGTGGCATCGGATAGCCATTCATAATGACCAGCTAGGTGCTTTTGCTGTCCAGAAGCTGGTGAAGAATTCTGCAGTTTATGTTGAGGGTGATATTGAAACCAGAGTATACAATGACAGCATTAATGATCAAGTGAAAAATATACCAGAGATTTGTCTTCGACGCGATGGTAAGATTCGGCTGATTAAATCTGGCGAGAGTGCTGCTAGCATTTCATTAGATGAGCTAAGAGAAGGATTGTTCTAG
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| Protein seq | MNSLSNGLLKGLRRVLEQQRKPIDFYRKSQAWSSTVSFSDIDEKSEMGGDDDYTDSRRELEPQSVDPKKGWGFRGVHRAIICGKVGQVPVQKILRNGRTVTVFTVGTGGMFDQRVVGDADLPKPAQWHRIAIHNDQLGAFAVQKLVKNSAVYVEGDIETRVYNDSINDQVKNIPEICLRRDGKIRLIKSGESAASISLDELREGLF |
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| Function | Single-stranded DNA-binding protein, mitochondrial [UniProtKB/Swiss-Prot:Q84J78] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0509700 | OsNip_05t0509700-01 | Chr05 | 25254990 | 25259747 | - | RAP2018-11-26 | ||
| CDS seq | ATGAATTCTCTCAGCAATGGATTACTGAAGGGCTTGAGGAGGGTCTTAGAACAGCAGAGAAAACCAATTGATTTCTACAGAAAATCTCAAGCTTGGAGTTCTACTGTTTCCTTTTCTGATATTGATGAGAAGAGTGAAATGGGAGGTGATGATGATTATACAGATTCAAGACGAGAGTTAGAACCCCAAAGCGTAGACCCCAAGAAGGGCTGGGGATTCCGTGGTGTTCACAGGGCTATAATATGCGGAAAAGTCGGACAGGTTCCTGTGCAGAAAATTTTAAGGAATGGTCGTACAGTGACTGTTTTTACAGTTGGAACTGGTGGCATGTTTGACCAGAGGGTAGTAGGGGATGCAGATCTGCCAAAGCCAGCTCAGTGGCATCGGATAGCCATTCATAATGACCAGCTAGGTGCTTTTGCTGTCCAGAAGCTGGTGAAGAATTCTGCAGTTTATGTTGAGGGTGATATTGAAACCAGAGTATACAATGACAGCATTAATGATCAAGTGAAAAATATACCAGAGATTTGTCTTCGACGCGATGGTAAGATTCGGCTGATTAAATCTGGCGAGAGTGCTGCTAGCATTTCATTAGATGAGCTAAGAGAAGGATTGTTCTAG
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| Protein seq | MNSLSNGLLKGLRRVLEQQRKPIDFYRKSQAWSSTVSFSDIDEKSEMGGDDDYTDSRRELEPQSVDPKKGWGFRGVHRAIICGKVGQVPVQKILRNGRTVTVFTVGTGGMFDQRVVGDADLPKPAQWHRIAIHNDQLGAFAVQKLVKNSAVYVEGDIETRVYNDSINDQVKNIPEICLRRDGKIRLIKSGESAASISLDELREGLF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0509700 | OsNip_05t0509700-02 | Chr05 | 25254820 | 25259710 | - | IsoSeq | ||
| CDS seq | TCCACCCAGGCACGAGCGCCGCCGCGGCCGACTCCACCGGACACCACCCAACGCCGCCAGCCGCCTCCTCCCATCCTCCCTCGATCCGTACGGATAGCCTCCCCGCTCGCTCGGTCTGCGCCCGTCGTCGTCGTCCCGCCGTCTTATCCCTCCCGCGACTCGGCGACGCGCGAAGGCCTCCGGCGCGGGGCTGAAGATTTA
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| Protein seq | STQARAPPRPTPPDTTQRRQPPPPILPRSVRIASPLARSAPVVVVPPSYPSRDSATREGLRRGAEDL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.272433 | 0.070947 | 1.765126 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0363700 | RBH | 1.148000 | 1.105079 | 1.727440 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g43440 | RBH | 0.828988 | 0.045971 | 0.442735 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0509700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0023080 | RBH | 0.242166 | 0.0 | 2.396750 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0023030 | RBH | 0.0 | 0.000000 | 1.159514 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0022970 | RBH | 1.375962 | 9.289857 | 5.755631 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0022960 | RBH | 0.000000 | 0.108562 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0023040 | RBH | 3.268807 | 15.098468 | 2.135566 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0022630 | RBH | 0.000000 | 1.002691 | 0.140811 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0401100 | RBH | 3.1888845 | 7.672852 | 14.689096 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0022800 | RBH | 0.289523 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0022710 | RBH | 0.249822 | 4.359238 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0022870 | RBH | 0.000000 | 9.818989 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0022900 | RBH | 0.0 | 0.431695 | 0.343234 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0022910 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G022320 | RBH | 0.184801 | 2.383925 | 0.798914 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0022750 | RBH | 0.945786 | 6.357644 | 13.547286 |
