Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_05g0507300 | OGI:05067920 | 12/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr05:25054712-25059048 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCAGTGAAGCGTACAGCCGAGCTACCACCACTCTCCGGCGCCGGCGAGCGGCGGACACGGCGACGGCGATGGGTCGCCTCCGCCGCGGCGGGGTCGGTCTCCTGCGTGGTGCCGTGGTGCTCGCGTCCCTTCTCCTCGTCGTCTCCGGCGAAGTCATCTTCGAGGAGCGATTCGATGGTACTGTGTACTACTGTTCCTGTACAAATCTCATTTGGTCTCGTTATCTGTTTTAGCTGTGTTGAACTGGAACGCTCAATTGATTATTACTGCCGCTTACTGTCTCCTCTACTGCTTATACTAGCTGTTGCTTTCAAATCGAGTTGAATATTTGATTGGATGCATGGGAAGCATTTCCTACCTGTAAATGTTATTCTGCTTCCGTGTTGATACTTTCTTGGTACTGAACTACTTATTGCTGCTTTCATGTTGCCGTTCTTGCTTGTTACAATTGATAAACTCAAAAAAATATATATCTGTTTGTGCCCTTTGGTCAGAGGAAGCTGTGATTATTGTTAAACTCAGAGAGTTTGAGCTAACCAACGGTGCAATGTTTTTCACGTTTAGATGATTGGGGAAGCAGATGGGTGAAATCTGACTGGAAAAAGAGCGAAGGGAAAGCCGGGACATTCAAACATACAGCAGGGAGCTATTCTGGAGATCCTGACGATAGAGGTGAGGGCCTGATTTGGTGCTACTTTCATTACAATTAGCATACTTCATTTATCAAATTAGCACTTCAAAATTCAGTCCTCATGTTTCAACTGTCAAGCCATACGATTAGAGCCTTATTTGTGCTATGAATTATGTCATGAATCATGTTGGTAATCTGTGTTGAAACCATGTTAGGTATACAAACAACCTCGGATGCTAAGCATTTTGCTATATCGGCCAAGTTCCCAGAATTCAGTAACAAGAACCGGACATTGGTGGTTCAGTATTCGATAAAGATTGAGCAGGATATTGAATGTGGTGGTGCTTATATCAAGCTTATGTCTGGCTATGTGAATCAGAAGAAATTTGGCGGTGACACTCCTTATAGGTAAATTTGGCTCCCTGTTTTTGATCTGCAAAAAGCTAATGATGCTATTTCTGAATTTGGTCTACACATTGACTCTAAAAGTTCTAACAAGGGCCATATAAAAGATTTTGTATGTGCAAAAGATAAAAAGCTTGAATGCAAATATGCAATTTGTTGAATAGTGAGTAAACCAGAATGTTAAGCCTTAACAGCTAAGCTGGTTTGGTTTACCACAAAAACCTAATAACCCATCCTTACAGTAAAATGGGTTACTATCTTACTAGTATTAAGTACTTGCTAGCCAAATATTGGTTGGTGGATATAGAATGTACCAATTACTTTCCGGTCCTCATGTTTTTTAGATAATGATCCGGTTGTCATTGTCTCATTGTGTTCCTCACTGAACTATTATTGTGTTTTCGTTCTGTCTAATCCTCTTCTGAGTTGCATCTGCTAACATCATGATGTTTACTTTTGCAGCTTCATGTTTGGGCCTGATATATGTGGTGATCAGACAAAGAAACTCCATCTGATACTGTCTTACCAAGGGCAAAACTACCCTATAAAGAAAGATCTGAAATGTGAAACTGACAAGTTGACACATTTTTACACATTCATTCTTAGGCCAGATGCCTCTTATAGTCTACTTGTTGATAACCGGGAGAGAGAATTTGGTAGTATGTACACTGACTGGGACATCCTCCCTCCTCGCAAGATCAAAGAATCTAATGCGAAGAAGGTTTGGGATCTGCAGCATGATTCAGAGAGATGTTATTGTGAGGAATTTCAACAAAAGCTTCTCTTATATTTGTCTTCTCTTGCAGCCAAAAGATTGGGATGACAGGGAATATATTGAAGATCCTGATGAAGTTAAACCAGAGGTTTGCAATTTCATATTTGTTATACATTGATAATACAAATAAAGAACGTTATGTAATCTTTTACCTTAATTTTCCAGGGCTATGACTCTATTCCTAAAGAGATTCCTGATCCAAAGGACAAAAAGGTTTGCACTTAAGAATTACGCTGTAAATCCAGCTTCTAATATTTTCGCATTTAATTGGCATATCCGTTTATAATGGACATAGTGTCATATGTTCTTAATATTATGAGAAGAACCCGAGTGCAGACAAAGGTTCCATTTTACCTGTTCAAGCTTGTTTCATTAGAAACATCCTATGGCATGTTAGCATTTTCTATCTGCTATTAGCTATATTGAACCCAGCATGACCTCAATGGCTCTTATGGTGTGTTTGCTAAGTTAATAAATATAACACAGGATGACATATGTTTTCCTTTCTACACTAAATCAGCCTGAGTCATGGGATGATGATGATGATGGTGTATGGAAGCCTAGAATGATACCGAATCCAGAATACAAGGGACGTTGGAAACGCAAGGTTTGTTTTATTGACTGATTAGCTCCTCATTGCCACATTTTGTAGCATTTTTTTAACATGCTTCTGTACGCAGAAAATTAAGAACCCTAACTACAAGGGAAAATGGAAGATCCCATGGATTGATAATCCAGGTGAGAAATGATGGGCTTTTTTTTTTTAACAGTACTATGTTAGCGTTTTTCATTTCTTGCTGCATATCTGACTTAGAGCTGGACCTCACCTCCTTCCAAATTTGAAGTGAATATTAAGTGATGTATATGCATCTTTCACAGAATTTGAGGACGACCCAGACCTATATGTGCTGAAACCTTTGCAGTATGTGGGAATTGAGGTTTGGCAGGTATTATATTTCTTGGTTAAATATGCTTGTTCTGTTGGAATGCTGCTTCTAGGCTGTGTCAAACGACACAGTCCTTTACATGAATGGCATAAATGCTATGTAAGCTAACATTCCAGGTGGTATGCAGGTGAAAGCTGGTTCAGTTTTTGACAACATTTTGATTTGTGACGACCCGGAGTATGCAAGAAGTGTTGTTGATGAAGTTAGGGCTGCAAATAAAGAGGTAGGCTCACCTGGAATAACAACACAGAACGCATATTTGTAAATTTATCCATGCCATTAGTTTCATGTCATGGAAACCCCCATTTCAATATATTTTTCTGTGTTGTAGGCTGAAAAGGAGGCCTTCGAGGAGGCTGAAAAGCGGAGGAAGGCTAGAGAAGACGAGGTTTGTGATTGCTTTTAGTTCACTGGTTACTCTTCTGTTTGTTCATTATTATGAAGAGTTGGGTCTTGTGACTCAGCAATTCCAGTTCATAGGGAAGCTAACAGATGCTTCTTTTCCACAGGAGGCTCGGCGTGCACGAGAGGAAGGAGAGAAACGAAGAAGAGACAGGGATCGGCACCGAGGCAGGGACCGTTACAGGGATAGATATAGAGTACATTTCTTCTCCCTGCTATCATGTGGAATACTTTCTTCCTTCTACAATTCAGCTGGTCTTTTTACTCCTTTCAGAGAGGGGTTGCCTCTAATATATCAAACACCGACCATAATAATCTATCAAAAATTTTAGCTTGTATCTGCTTGCTTTAGGATATAACAGGAAAATCTATAGCTGTATTAAAATTTACAAAGATCAGGTAAAAGATAGGTAGCAAGAAAAAAAAGTAATAGACATTCTGTCAGCAAAACATGTAAGAATTCTAGACATCATCACTGTGGAGACATGTAGAGGTAGTGTGCGTGCTAACCACTAACTGCCATATACATGTACAATTTGCTAATGCTGATGCATAGGCTAGTATCAGTAATATGACACCGGTTGATGGCCATCACAACTGACATCTTATTTTGTTTCTCTACATTTGCAGGGTCATCATCGTAGGTATGACTACCATGTAAGTTACAAAACTTCTCCATTTGCTTGTATCTCTAGAACTGCCAAAGGTACAGGAGAAACAGTTCAGTAACATTTTCAATCTGTTGGTTTCATATTCAGGACGAGCTATGAGGTCTCCAGATTATCCCATTCTTTCAAGGAACTTCAGGAAGTTAGTGTTGCCCATCGACTATTTCATCACCCAATTGATGATTGTACCAATAAAATAGAACATGTTATTTCGAGGACAGAACAAAGCTTTATTTCAGGTGTGGATAGCACACTACAACACGAACTGATGCTGTTCACCTGAAACCAAGTAACAAACTGAAGATGTGAAAGCTAGAACGTACATTTTTGGGCAGTAACAATATGCTAGCGAAGAGGACGATATGTTTCCATCTTCCAGTAATATTTCTCCTTATTAGTGCCTTAGAACATAGAAAATAAATCACTCTAGGTTGTGAAATATAAACTGTACTTTCATTGTACTTCAGTTATATATATCTGGCAGTGTGTGTTACTAATGTTCAGAGAGT
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| CDS seq | AGTGAAGCGTACAGCCGAGCTACCACCACTCTCCGGCGCCGGCGAGCGGCGGACACGGCGACGGCGATGGGTCGCCTCCGCCGCGGCGGGGTCGGTCTCCTGCGTGGTGCCGTGGTGCTCGCGTCCCTTCTCCTCGTCGTCTCCGGCGAAGTCATCTTCGAGGAGCGATTCGATGATGATTGGGGAAGCAGATGGGTGAAATCTGACTGGAAAAAGAGCGAAGGGAAAGCCGGGACATTCAAACATACAGCAGGGAGCTATTCTGGAGATCCTGACGATAGAGGTATACAAACAACCTCGGATGCTAAGCATTTTGCTATATCGGCCAAGTTCCCAGAATTCAGTAACAAGAACCGGACATTGGTGGTTCAGTATTCGATAAAGATTGAGCAGGATATTGAATGTGGTGGTGCTTATATCAAGCTTATGTCTGGCTATGTGAATCAGAAGAAATTTGGCGGTGACACTCCTTATAGCTTCATGTTTGGGCCTGATATATGTGGTGATCAGACAAAGAAACTCCATCTGATACTGTCTTACCAAGGGCAAAACTACCCTATAAAGAAAGATCTGAAATGTGAAACTGACAAGTTGACACATTTTTACACATTCATTCTTAGGCCAGATGCCTCTTATAGTCTACTTGTTGATAACCGGGAGAGAGAATTTGGTAGTATGTACACTGACTGGGACATCCTCCCTCCTCGCAAGATCAAAGAATCTAATGCGAAGAAGCCAAAAGATTGGGATGACAGGGAATATATTGAAGATCCTGATGAAGTTAAACCAGAGGGCTATGACTCTATTCCTAAAGAGATTCCTGATCCAAAGGACAAAAAGCCTGAGTCATGGGATGATGATGATGATGGTGTATGGAAGCCTAGAATGATACCGAATCCAGAATACAAGGGACGTTGGAAACGCAAGAAAATTAAGAACCCTAACTACAAGGGAAAATGGAAGATCCCATGGATTGATAATCCAGAATTTGAGGACGACCCAGACCTATATGTGCTGAAACCTTTGCAGTATGTGGGAATTGAGGTTTGGCAGGTGAAAGCTGGTTCAGTTTTTGACAACATTTTGATTTGTGACGACCCGGAGTATGCAAGAAGTGTTGTTGATGAAGTTAGGGCTGCAAATAAAGAGGCTGAAAAGGAGGCCTTCGAGGAGGCTGAAAAGCGGAGGAAGGCTAGAGAAGACGAGGAGGCTCGGCGTGCACGAGAGGAAGGAGAGAAACGAAGAAGAGACAGGGATCGGCACCGAGGCAGGGACCGTTACAGGGATAGATATAGAGGTCATCATCGTAGGTATGACTACCATGACGAG
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| Protein seq | SEAYSRATTTLRRRRAADTATAMGRLRRGGVGLLRGAVVLASLLLVVSGEVIFEERFDDDWGSRWVKSDWKKSEGKAGTFKHTAGSYSGDPDDRGIQTTSDAKHFAISAKFPEFSNKNRTLVVQYSIKIEQDIECGGAYIKLMSGYVNQKKFGGDTPYSFMFGPDICGDQTKKLHLILSYQGQNYPIKKDLKCETDKLTHFYTFILRPDASYSLLVDNREREFGSMYTDWDILPPRKIKESNAKKPKDWDDREYIEDPDEVKPEGYDSIPKEIPDPKDKKPESWDDDDDGVWKPRMIPNPEYKGRWKRKKIKNPNYKGKWKIPWIDNPEFEDDPDLYVLKPLQYVGIEVWQVKAGSVFDNILICDDPEYARSVVDEVRAANKEAEKEAFEEAEKRRKAREDEEARRAREEGEKRRRDRDRHRGRDRYRDRYRGHHRRYDYHDE |
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| Function | Calreticulin-3 [UniProtKB/Swiss-Prot:O04153] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0507300 | OsNip_05t0507300-01 | Chr05 | 25055345 | 25059031 | + | RAP2018-11-26 | ||
| CDS seq | ACAGCAGGGAGCTATTCTGGAGATCCTGACGATAGAGGTATACAAACAACCTCGGATGCTAAGCATTTTGCTATATCGGCCAAGTTCCCAGAATTCAGTAACAAGAACCGGACATTGGTGGTTCAGTATTCGATAAAGATTGAGCAGGATATTGAATGTGGTGGTGCTTATATCAAGCTTATGTCTGGCTATGTGAATCAGAAGAAATTTGGCGGTGACACTCCTTATAGCTTCATGTTTGGGCCTGATATATGTGGTGATCAGACAAAGAAACTCCATCTGATACTGTCTTACCAAGGGCAAAACTACCCTATAAAGAAAGATCTGAAATGTGAAACTGACAAGTTGACACATTTTTACACATTCATTCTTAGGCCAGATGCCTCTTATAGTCTACTTGTTGATAACCGGGAGAGAGAATTTGGTAGTATGTACACTGACTGGGACATCCTCCCTCCTCGCAAGATCAAAGAATCTAATGCGAAGAAGCCAAAAGATTGGGATGACAGGGAATATATTGAAGATCCTGATGAAGTTAAACCAGAGGGCTATGACTCTATTCCTAAAGAGATTCCTGATCCAAAGGACAAAAAGCCTGAGTCATGGGATGATGATGATGATGGTGTATGGAAGCCTAGAATGATACCGAATCCAGAATACAAGGGACGTTGGAAACGCAAGAAAATTAAGAACCCTAACTACAAGGGAAAATGGAAGATCCCATGGATTGATAATCCAGAATTTGAGGACGACCCAGACCTATATGTGCTGAAACCTTTGCAGTATGTGGGAATTGAGGTTTGGCAGGTGAAAGCTGGTTCAGTTTTTGACAACATTTTGATTTGTGACGACCCGGAGTATGCAAGAAGTGTTGTTGATGAAGTTAGGGCTGCAAATAAAGAGGCTGAAAAGGAGGCCTTCGAGGAGGCTGAAAAGCGGAGGAAGGCTAGAGAAGACGAGGAGGCTCGGCGTGCACGAGAGGAAGGAGAGAAACGAAGAAGAGACAGGGATCGGCACCGAGGCAGGGACCGTTACAGGGATAGATATAGAGGTCATCATCGTAGGTATGACTACCATGACGAGCTATGA
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| Protein seq | TAGSYSGDPDDRGIQTTSDAKHFAISAKFPEFSNKNRTLVVQYSIKIEQDIECGGAYIKLMSGYVNQKKFGGDTPYSFMFGPDICGDQTKKLHLILSYQGQNYPIKKDLKCETDKLTHFYTFILRPDASYSLLVDNREREFGSMYTDWDILPPRKIKESNAKKPKDWDDREYIEDPDEVKPEGYDSIPKEIPDPKDKKPESWDDDDDGVWKPRMIPNPEYKGRWKRKKIKNPNYKGKWKIPWIDNPEFEDDPDLYVLKPLQYVGIEVWQVKAGSVFDNILICDDPEYARSVVDEVRAANKEAEKEAFEEAEKRRKAREDEEARRAREEGEKRRRDRDRHRGRDRYRDRYRGHHRRYDYHDEL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0507300 | OsNip_05t0507300-02 | Chr05 | 25054712 | 25059048 | + | IsoSeq | ||
| CDS seq | AGTGAAGCGTACAGCCGAGCTACCACCACTCTCCGGCGCCGGCGAGCGGCGGACACGGCGACGGCGATGGGTCGCCTCCGCCGCGGCGGGGTCGGTCTCCTGCGTGGTGCCGTGGTGCTCGCGTCCCTTCTCCTCGTCGTCTCCGGCGAAGTCATCTTCGAGGAGCGATTCGATGATGATTGGGGAAGCAGATGGGTGAAATCTGACTGGAAAAAGAGCGAAGGGAAAGCCGGGACATTCAAACATACAGCAGGGAGCTATTCTGGAGATCCTGACGATAGAGGTATACAAACAACCTCGGATGCTAAGCATTTTGCTATATCGGCCAAGTTCCCAGAATTCAGTAACAAGAACCGGACATTGGTGGTTCAGTATTCGATAAAGATTGAGCAGGATATTGAATGTGGTGGTGCTTATATCAAGCTTATGTCTGGCTATGTGAATCAGAAGAAATTTGGCGGTGACACTCCTTATAGCTTCATGTTTGGGCCTGATATATGTGGTGATCAGACAAAGAAACTCCATCTGATACTGTCTTACCAAGGGCAAAACTACCCTATAAAGAAAGATCTGAAATGTGAAACTGACAAGTTGACACATTTTTACACATTCATTCTTAGGCCAGATGCCTCTTATAGTCTACTTGTTGATAACCGGGAGAGAGAATTTGGTAGTATGTACACTGACTGGGACATCCTCCCTCCTCGCAAGATCAAAGAATCTAATGCGAAGAAGCCAAAAGATTGGGATGACAGGGAATATATTGAAGATCCTGATGAAGTTAAACCAGAGGGCTATGACTCTATTCCTAAAGAGATTCCTGATCCAAAGGACAAAAAGCCTGAGTCATGGGATGATGATGATGATGGTGTATGGAAGCCTAGAATGATACCGAATCCAGAATACAAGGGACGTTGGAAACGCAAGAAAATTAAGAACCCTAACTACAAGGGAAAATGGAAGATCCCATGGATTGATAATCCAGAATTTGAGGACGACCCAGACCTATATGTGCTGAAACCTTTGCAGTATGTGGGAATTGAGGTTTGGCAGGTGAAAGCTGGTTCAGTTTTTGACAACATTTTGATTTGTGACGACCCGGAGTATGCAAGAAGTGTTGTTGATGAAGTTAGGGCTGCAAATAAAGAGGCTGAAAAGGAGGCCTTCGAGGAGGCTGAAAAGCGGAGGAAGGCTAGAGAAGACGAGGAGGCTCGGCGTGCACGAGAGGAAGGAGAGAAACGAAGAAGAGACAGGGATCGGCACCGAGGCAGGGACCGTTACAGGGATAGATATAGAGGTCATCATCGTAGGTATGACTACCATGACGAG
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| Protein seq | SEAYSRATTTLRRRRAADTATAMGRLRRGGVGLLRGAVVLASLLLVVSGEVIFEERFDDDWGSRWVKSDWKKSEGKAGTFKHTAGSYSGDPDDRGIQTTSDAKHFAISAKFPEFSNKNRTLVVQYSIKIEQDIECGGAYIKLMSGYVNQKKFGGDTPYSFMFGPDICGDQTKKLHLILSYQGQNYPIKKDLKCETDKLTHFYTFILRPDASYSLLVDNREREFGSMYTDWDILPPRKIKESNAKKPKDWDDREYIEDPDEVKPEGYDSIPKEIPDPKDKKPESWDDDDDGVWKPRMIPNPEYKGRWKRKKIKNPNYKGKWKIPWIDNPEFEDDPDLYVLKPLQYVGIEVWQVKAGSVFDNILICDDPEYARSVVDEVRAANKEAEKEAFEEAEKRRKAREDEEARRAREEGEKRRRDRDRHRGRDRYRDRYRGHHRRYDYHDE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 7.582812 | 6.226716 | 7.708901 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g43170 | RBH | 4.732642 | 3.863550 | 1.750304 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0507300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0022930 | RBH | 1.075521 | 37.586582 | 1.456840 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0022870 | RBH | 0.074215 | 3.847753 | 2.302048 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0022820 | RBH | 4.538451 | 32.291798 | 6.127732 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0022810 | RBH | 0.378669 | 0.490868 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0022880 | RBH | 9.956964 | 9.708517 | 26.519278 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0388400 | RBH | 5.624971 | 11.8537455 | 3.8029875 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0022480 | RBH | 0.836938 | 0.466265 | 0.981272 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0398300 | RBH | 9.6930205 | 12.271675 | 6.359242 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0022660 | SBH | 0.905375 | 0.497405 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0022560 | SBH | 0.606038 | 4.508199 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0022720 | RBH | 2.715542 | 29.789406 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0022750 | SBH | 1.095359 | 3.163542 | 0.679148 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0022760 | RBH | 0.308176 | 2.561709 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G022180 | SBH | 0.600430 | 5.712099 | 0.809596 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0022600 | RBH | 3.491375 | 61.370468 | 9.757614 |
