Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_05g0497500 | OGI:05066280 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr05:24464286-24466738 | ||||||||
| Gene Symbol | C3H36, OsC3H36 | ||||||||||
| DNA seq | TAACCACACATGCAATAAAGATTCTGTCTTGGTTGCATTAGATCTCCTCTCAGCTCACATGCAAAAACATATTAAATTAAACATCCACCATGTTAAGATGCTGCTAGGGAGCCCAGACTGAAGTCTACAAAACCAAACAGGTTCATGTAACAGAGTACCTTACTCAAAACATCTAGCACAGCAACAAAACGCATTGGTAGGCCAGCAGGCTCAAACCCCATCTCTTCAATGTTGTAGCTCATAATTAGAAGCCTGGATCTCATGATGTGCGATAACGATCAACATATGCCTGTGGCAAAAATCATACAGAAGTCAAACATATAATCAATAATCAGAAGATGTGCCATTCACCAACAAATTCAAGATATTTTACCTTCACAAGTTTTTCTATCTTTGGTGCAGAGGCTGTTATATAAGTAGTTATCGCCTTCTCAGTCTCTGGCATCTGATTTGGCTCAAGTGAAGCAAAAATCTTATCAACAGATTTTTTCACAATCAGTTTATGAGCCTCTTTACTCAAATTGCCTTCCTTCCAGATTGGTTTCACCAGCTCCTTTACATGCTCCACCAAATGAAAACGAAAGTCTGATTTCTCATTGTTAAGTGATGCATCATTTTTCCTTTCACAGGTTTTCACCCTATTATCACCATCCAGGCTAGAGCTGTGTCCCCTATCATATGAAATCAAACCAAAATCATTTGATCCTTTAGCAGATACATTCCTTGCCAACTTGTCAGCAAAAGTCAATGGTTTTTCAAGACTTCCCCCTCTTATAACATTCGTATCTACATGTTGGCTTGAAATGCTGCAGGATATGTTTGAGGTCTTCAGATTATTTAAACTTTCAACTTTGGGAGGGTCGATACTGTCGACAAGTGGGTCATACTGACTTTTTGAAGGTGATGTACTGCCAGGAAAATCAGGAAAATTAAAAGAAGGTACAAAAGGCACTGAAGTTATCCAAACCTCATCCTTGATTGGGGAAAGTTTCCCAGCCGATGCTACCACAGGTTGAGATGAACTGCTCACATGTAATGTAGACCTAGAGGTACCACCCTTGTCAAAATCAGCACCTTTATGGTGACTGGCATCCTTATCAGGTGTTAATTGATGAAGAGGCAGGGTTCCATGGTGAGAAGTTGCTCGGAGAGACTGATTAACCAAGAAAAAATCAGAGCTGTCATGACCTTGCTTTCTGAATCCTGTATAACTATTCAAACTGTATGAGACATGGCTTGAACTTTTTTCTTCCTGATGTTTGTGAGGAAGATTCTCTGTTGCTCCACCATAAGCTGACAACTTCTTGCTATATTGGTGAGGATCTAATGAAATAGTTGAGTCAAACGGTTGATACCGATAATCAGGCTTTAAGGGGTTCTTTTCAAGGTAAGATCTTGATAGATGTGAATCCCTTGGACTGTCACCCTTGGCCACTTCAAACTGCAGCTTTCCTCCATCTAGGCGCAATCTAGAATAGGCACCCATGTCATTCAAACAGTTGTTAGTGCCCAAACTAATTTGATGTCCCATGAAATAAGGTTCATGATTCTTCTCTTGAACTACTGGAAGCTGAACCACCTCATTAGTAGGATTTGCAGTCAATGAACCACCAATTTTGAAACCATGCGAAGCCTTTAGCATGTGACAACTATGTTTAACAACGGGATGTGTCAACCCCCTATTATCTTCACCATATGCATGAACAAGGGTCCTATATATCTCATGTTGGGATGACCCCGCTGAATTTTTGAACTGGTGCTCTTTTGAGCTGGATGGATGTTGTATTTCAGATCCTTCTCCAGTGCCTGAACACAGCAGATAAGGAGCAACCAAAAGTGTTTAGATTGACAGAGTGATCATAAGTTCACAGCTACATGATATTCTTCAGCTTATTCTAATGAAAAAGTTCATACCTCCATGATTTCCATAAACCTGGTTATCAGAACCAGATACCTCCCCTTCATGAAGAAAAGTGCAACTCTTCCCATTCTTGCATCGCCCTTGAGCATAAAAGGTACAGGTACGCTTTCTGGTTTTGTTCTTCATATCTCCACCAGGAGATGAACTCCCAAATCGTTGCGAACTAGTGACAAAATATATTATTTTTAAGATGTGATACAGAAAGAAGTATGTTTTAGTCAAACATCACAGAAAATAAGAAATTTTCTTCTAAATTTCAAAATTCCTAGTGCAGTAGCACATACCTCAAAGCATTAGAATCAGGTGGGCTTTGTGATACATGACCACCATGCAAATGAAGACCTCCAGTTTTGGATGTATCATCAATGGTAGGAGGTACAGGATCATTCCCAGCTTTCTTCTGATATTTTTCATCGCCATGAAGCTGCAGTGCTGGTTTCTTCTCAGCAGCAATCACTCCAACAAAACCTAGATGATGAGTGGTAAGTATGAGATGTGTGTGCATGTGTGTTACACAAATAAAAATGGACAT
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| CDS seq | ATGTCCATTTTTATTTGTGTAACACACATGCACACACATCTCATACTTACCACTCATCATCTAGGTTTTGTTGGAGTGATTGCTGCTGAGAAGAAACCAGCACTGCAGCTTCATGGCGATGAAAAATATCAGAAGAAAGCTGGGAATGATCCTGTACCTCCTACCATTGATGATACATCCAAAACTGGAGGTCTTCATTTGCATGGTGGTCATGTATCACAAAGCCCACCTGATTCTAATGCTTTGAGTTCATCTCCTGGTGGAGATATGAAGAACAAAACCAGAAAGCGTACCTGTACCTTTTATGCTCAAGGGCGATGCAAGAATGGGAAGAGTTGCACTTTTCTTCATGAAGGGGAGGTATCTGGTTCTGATAACCAGGTTTATGGAAATCATGGAGGCACTGGAGAAGGATCTGAAATACAACATCCATCCAGCTCAAAAGAGCACCAGTTCAAAAATTCAGCGGGGTCATCCCAACATGAGATATATAGGACCCTTGTTCATGCATATGGTGAAGATAATAGGGGGTTGACACATCCCGTTGTTAAACATAGTTGTCACATGCTAAAGGCTTCGCATGGTTTCAAAATTGGTGGTTCATTGACTGCAAATCCTACTAATGAGGTGGTTCAGCTTCCAGTAGTTCAAGAGAAGAATCATGAACCTTATTTCATGGGACATCAAATTAGTTTGGGCACTAACAACTGTTTGAATGACATGGGTGCCTATTCTAGATTGCGCCTAGATGGAGGAAAGCTGCAGTTTGAAGTGGCCAAGGGTGACAGTCCAAGGGATTCACATCTATCAAGATCTTACCTTGAAAAGAACCCCTTAAAGCCTGATTATCGGTATCAACCGTTTGACTCAACTATTTCATTAGATCCTCACCAATATAGCAAGAAGTTGTCAGCTTATGGTGGAGCAACAGAGAATCTTCCTCACAAACATCAGGAAGAAAAAAGTTCAAGCCATGTCTCATACAGTTTGAATAGTTATACAGGATTCAGAAAGCAAGGTCATGACAGCTCTGATTTTTTCTTGGTTAATCAGTCTCTCCGAGCAACTTCTCACCATGGAACCCTGCCTCTTCATCAATTAACACCTGATAAGGATGCCAGTCACCATAAAGGTGCTGATTTTGACAAGGGTGGTACCTCTAGGTCTACATTACATGTGAGCAGTTCATCTCAACCTGTGGTAGCATCGGCTGGGAAACTTTCCCCAATCAAGGATGAGGTTTGGATAACTTCAGTGCCTTTTGTACCTTCTTTTAATTTTCCTGATTTTCCTGGCAGTACATCACCTTCAAAAAGTCAGTATGACCCACTTGTCGACAGTATCGACCCTCCCAAAGTTGAAAGTTTAAATAATCTGAAGACCTCAAACATATCCTGCAGCATTTCAAGCCAACATGTAGATACGAATGTTATAAGAGGGGGAAGTCTTGAAAAACCATTGACTTTTGCTGACAAGTTGGCAAGGAATGTATCTGCTAAAGGATCAAATGATTTTGGTTTGATTTCATATGATAGGGGACACAGCTCTAGCCTGGATGGTGATAATAGGGTGAAAACCTGTGAAAGGAAAAATGATGCATCACTTAACAATGAGAAATCAGACTTTCGTTTTCATTTGGTGGAGCATGTAAAGGAGCTGGTGAAACCAATCTGGAAGGAAGGCAATTTGAGTAAAGAGGCTCATAAACTGATTGTGAAAAAATCTGTTGATAAGATTTTTGCTTCACTTGAGCCAAATCAGATGCCAGAGACTGAGAAGGCGATAACTACTTATATAACAGCCTCTGCACCAAAGATAGAAAAACTTGTGAAGGTAAAATATCTTGAATTTGTTGGTGAATGGCACATCTTCTGA
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| Protein seq | MSIFICVTHMHTHLILTTHHLGFVGVIAAEKKPALQLHGDEKYQKKAGNDPVPPTIDDTSKTGGLHLHGGHVSQSPPDSNALSSSPGGDMKNKTRKRTCTFYAQGRCKNGKSCTFLHEGEVSGSDNQVYGNHGGTGEGSEIQHPSSSKEHQFKNSAGSSQHEIYRTLVHAYGEDNRGLTHPVVKHSCHMLKASHGFKIGGSLTANPTNEVVQLPVVQEKNHEPYFMGHQISLGTNNCLNDMGAYSRLRLDGGKLQFEVAKGDSPRDSHLSRSYLEKNPLKPDYRYQPFDSTISLDPHQYSKKLSAYGGATENLPHKHQEEKSSSHVSYSLNSYTGFRKQGHDSSDFFLVNQSLRATSHHGTLPLHQLTPDKDASHHKGADFDKGGTSRSTLHVSSSSQPVVASAGKLSPIKDEVWITSVPFVPSFNFPDFPGSTSPSKSQYDPLVDSIDPPKVESLNNLKTSNISCSISSQHVDTNVIRGGSLEKPLTFADKLARNVSAKGSNDFGLISYDRGHSSSLDGDNRVKTCERKNDASLNNEKSDFRFHLVEHVKELVKPIWKEGNLSKEAHKLIVKKSVDKIFASLEPNQMPETEKAITTYITASAPKIEKLVKVKYLEFVGEWHIF |
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| Function | Zinc finger CCCH domain-containing protein 36 [UniProtKB/Swiss-Prot:Q75K81] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0497500 | OsNip_05t0497500-00 | Chr05 | 24464286 | 24466738 | - | RAP2018-11-26 | ||
| CDS seq | ATGTCCATTTTTATTTGTGTAACACACATGCACACACATCTCATACTTACCACTCATCATCTAGGTTTTGTTGGAGTGATTGCTGCTGAGAAGAAACCAGCACTGCAGCTTCATGGCGATGAAAAATATCAGAAGAAAGCTGGGAATGATCCTGTACCTCCTACCATTGATGATACATCCAAAACTGGAGGTCTTCATTTGCATGGTGGTCATGTATCACAAAGCCCACCTGATTCTAATGCTTTGAGTTCATCTCCTGGTGGAGATATGAAGAACAAAACCAGAAAGCGTACCTGTACCTTTTATGCTCAAGGGCGATGCAAGAATGGGAAGAGTTGCACTTTTCTTCATGAAGGGGAGGTATCTGGTTCTGATAACCAGGTTTATGGAAATCATGGAGGCACTGGAGAAGGATCTGAAATACAACATCCATCCAGCTCAAAAGAGCACCAGTTCAAAAATTCAGCGGGGTCATCCCAACATGAGATATATAGGACCCTTGTTCATGCATATGGTGAAGATAATAGGGGGTTGACACATCCCGTTGTTAAACATAGTTGTCACATGCTAAAGGCTTCGCATGGTTTCAAAATTGGTGGTTCATTGACTGCAAATCCTACTAATGAGGTGGTTCAGCTTCCAGTAGTTCAAGAGAAGAATCATGAACCTTATTTCATGGGACATCAAATTAGTTTGGGCACTAACAACTGTTTGAATGACATGGGTGCCTATTCTAGATTGCGCCTAGATGGAGGAAAGCTGCAGTTTGAAGTGGCCAAGGGTGACAGTCCAAGGGATTCACATCTATCAAGATCTTACCTTGAAAAGAACCCCTTAAAGCCTGATTATCGGTATCAACCGTTTGACTCAACTATTTCATTAGATCCTCACCAATATAGCAAGAAGTTGTCAGCTTATGGTGGAGCAACAGAGAATCTTCCTCACAAACATCAGGAAGAAAAAAGTTCAAGCCATGTCTCATACAGTTTGAATAGTTATACAGGATTCAGAAAGCAAGGTCATGACAGCTCTGATTTTTTCTTGGTTAATCAGTCTCTCCGAGCAACTTCTCACCATGGAACCCTGCCTCTTCATCAATTAACACCTGATAAGGATGCCAGTCACCATAAAGGTGCTGATTTTGACAAGGGTGGTACCTCTAGGTCTACATTACATGTGAGCAGTTCATCTCAACCTGTGGTAGCATCGGCTGGGAAACTTTCCCCAATCAAGGATGAGGTTTGGATAACTTCAGTGCCTTTTGTACCTTCTTTTAATTTTCCTGATTTTCCTGGCAGTACATCACCTTCAAAAAGTCAGTATGACCCACTTGTCGACAGTATCGACCCTCCCAAAGTTGAAAGTTTAAATAATCTGAAGACCTCAAACATATCCTGCAGCATTTCAAGCCAACATGTAGATACGAATGTTATAAGAGGGGGAAGTCTTGAAAAACCATTGACTTTTGCTGACAAGTTGGCAAGGAATGTATCTGCTAAAGGATCAAATGATTTTGGTTTGATTTCATATGATAGGGGACACAGCTCTAGCCTGGATGGTGATAATAGGGTGAAAACCTGTGAAAGGAAAAATGATGCATCACTTAACAATGAGAAATCAGACTTTCGTTTTCATTTGGTGGAGCATGTAAAGGAGCTGGTGAAACCAATCTGGAAGGAAGGCAATTTGAGTAAAGAGGCTCATAAACTGATTGTGAAAAAATCTGTTGATAAGATTTTTGCTTCACTTGAGCCAAATCAGATGCCAGAGACTGAGAAGGCGATAACTACTTATATAACAGCCTCTGCACCAAAGATAGAAAAACTTGTGAAGGTAAAATATCTTGAATTTGTTGGTGAATGGCACATCTTCTGA
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| Protein seq | MSIFICVTHMHTHLILTTHHLGFVGVIAAEKKPALQLHGDEKYQKKAGNDPVPPTIDDTSKTGGLHLHGGHVSQSPPDSNALSSSPGGDMKNKTRKRTCTFYAQGRCKNGKSCTFLHEGEVSGSDNQVYGNHGGTGEGSEIQHPSSSKEHQFKNSAGSSQHEIYRTLVHAYGEDNRGLTHPVVKHSCHMLKASHGFKIGGSLTANPTNEVVQLPVVQEKNHEPYFMGHQISLGTNNCLNDMGAYSRLRLDGGKLQFEVAKGDSPRDSHLSRSYLEKNPLKPDYRYQPFDSTISLDPHQYSKKLSAYGGATENLPHKHQEEKSSSHVSYSLNSYTGFRKQGHDSSDFFLVNQSLRATSHHGTLPLHQLTPDKDASHHKGADFDKGGTSRSTLHVSSSSQPVVASAGKLSPIKDEVWITSVPFVPSFNFPDFPGSTSPSKSQYDPLVDSIDPPKVESLNNLKTSNISCSISSQHVDTNVIRGGSLEKPLTFADKLARNVSAKGSNDFGLISYDRGHSSSLDGDNRVKTCERKNDASLNNEKSDFRFHLVEHVKELVKPIWKEGNLSKEAHKLIVKKSVDKIFASLEPNQMPETEKAITTYITASAPKIEKLVKVKYLEFVGEWHIF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.995687 | 0.507733 | 2.086948 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g41790 | RBH | 0.982933 | 0.343726 | 0.549781 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0497500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0022280 | RBH | 0.364386 | 5.304852 | 4.499992 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0022240 | RBH | 0.230845 | 0.966224 | 2.077736 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0022170 | RBH | 0.814081 | 6.903137 | 10.934685 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0022150 | RBH | 0.118174 | 0.073179 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0022220 | RBH | 3.009577 | 17.494267 | 13.851573 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0379100 | RBH | 4.212813 | 11.1634175 | 12.447611 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0021810 | RBH | 0.178681 | 0.275767 | 0.955050 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0388300 | RBH | 5.446024 | 9.368801 | 21.1770355 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0022090 | RBH | 0.094056 | 0.192951 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0022000 | RBH | 0.354925 | 7.545733 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0022140 | RBH | 2.139628 | 11.365582 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0022190 | RBH | 0.370866 | 0.534731 | 0.316765 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0022170 | RBH | 0.160321 | 1.889193 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G021610 | RBH | 0.283412 | 2.145965 | 1.743255 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0022020 | RBH | 0.0 | 11.785419 | 2.955742 |
