Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_05g0475600 | OGI:05063580 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr05:23374299-23375716 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAATCAATGTCCAGCTGCATCAAAGTGCATGAGCTTGGATCGAGAAGGTCCATGATGTGATCGATGCTAACATCGTCAAGTATTACGCCAACCTGTGGATCCAATCCAGCCCGTGTGACTTGATTTTGTTCAGTAAGATCCCAATCCCAATGTTGTTGCCTTTGTTTTTCAGATCTGTTCAATTTTTGACAACTTCTGAATGCTATGCATGATTTAGATAGTATCTTGTGGCCTGAAGAGGATTGCTGTATAGTTTGCACATCGTTTATTCAAAATCTGACCAAAAACACATATTACTACTAATAAGTAAACTTCATTGCAGTGTTCAGTAAATTAAAAATACGAAATGTTGTTGCACTAAAAGAAATTAATATTGCAAGTAGGTCAGGGGAACATATTGTGGAAATCAGTGTCAAATTGTTGAAATGGCCTCCCTTGGTGCAGCCCCTGACTTTCTGGAGTCACTGAGATAGGAGTATGAAATAAAGGGTGTGTTGACGCTTCCAGAGCAGCATAGTACTGTGATACATGTAAAAAAGTTTGGTTGCTAGGAACCTCCAGATGGCCCTAACATAACAAAAAAAAAACAGAGGAAAGGTCAGGGATGATAACAAGAGCATGCGATTTTGGAGATTAATTATGTGAGAAATATACCATTACTGTAGCAGGTGGTTGTGACTGCATCTCAGGTTGTGGTTCTAGCACATGGTCCGGAACATCGTCATCCTTCTTCTTTCTCTTCCTCTGCGATGATGCTTTCTCTAAGCCACCAACACGTCTAGCTGAACCATGGATGCCCTTTTCCTTGAGCTTAATGCCTCTTGGCTTTTTGGGCATCTGATTTTCTTTCCCAACTGGAAATAATATGTTTAGAATTGTATCGGTCAGACTATAATATTACTTATAATTAACATATAGAACTTTGATACGAACCTTGTGGGGAAGGCGACTTGTCTAAATCTGGATCACTTCTGATTCTCAAGAACTTCTCTATATCTTCTGCCAATTTTTCAGCACAATTAGTAGACATGGAGTATGTTTCTTCAGATTTTGCAGCTGTAGAAGCTATTCGAACAAACATTCTACACAATGAGGAGTATCGATCTGATATCTTTATTCTAGGGTCATCATGCATATTGCTGTTGCCACTTATATGCAATACTTTTGCATCAATTGTCCATCTTTTTAATATATATTGTTGAGGAACTGATTTAATATTGTTGACGTCAAGTATCTTCAGTGCATGAGAGCACAAGATGCCAGCAAATTCAAACTTCTTGCAACTGCATTTAACATTGGATTCCAACGGAGAGTATCTAACAACATGTTCAAGATGCTTACCGTTGGCCTTTATTTTGTACACCTTTTCTACATCAACCTCACCACAGTAGAATATGTCACAATTCAAAGTCTGCAT
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| CDS seq | ATGCAGACTTTGAATTGTGACATATTCTACTGTGGTGAGGTTGATGTAGAAAAGGTGTACAAAATAAAGGCCAACGCTTCTACAGCTGCAAAATCTGAAGAAACATACTCCATGTCTACTAATTGTGCTGAAAAATTGGCAGAAGATATAGAGAAGTTCTTGAGAATCAGAAGTGATCCAGATTTAGACAAGTCGCCTTCCCCACAAGTTGGGAAAGAAAATCAGATGCCCAAAAAGCCAAGAGGCATTAAGCTCAAGGAAAAGGGCATCCATGGTTCAGCTAGACGTGTTGGTGGCTTAGAGAAAGCATCATCGCAGAGGAAGAGAAAGAAGAAGGATGACGATGTTCCGGACCATGTGCTAGAACCACAACCTGAGATGCAGTCACAACCACCTGCTACAGTAATGCAATCCTCTTCAGGCCACAAGATACTATCTAAATCATGCATAGCATTCAGAAGTTGTCAAAAATTGAACAGATCTGAAAAACAAAGGCAACAACATTGGGATTGGGATCTTACTGAACAAAATCAAGTCACACGGGCTGGATTGGATCCACAGGTTGGCGTAATACTTGACGATGTTAGCATCGATCACATCATGGACCTTCTCGATCCAAGCTCATGCACTTTGATGCAGCTGGACATTGATTAA
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| Protein seq | MQTLNCDIFYCGEVDVEKVYKIKANASTAAKSEETYSMSTNCAEKLAEDIEKFLRIRSDPDLDKSPSPQVGKENQMPKKPRGIKLKEKGIHGSARRVGGLEKASSQRKRKKKDDDVPDHVLEPQPEMQSQPPATVMQSSSGHKILSKSCIAFRSCQKLNRSEKQRQQHWDWDLTEQNQVTRAGLDPQVGVILDDVSIDHIMDLLDPSSCTLMQLDID |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0475600 | OsNip_05t0475600-00 | Chr05 | 23374299 | 23375716 | - | RAP2018-11-26 | ||
| CDS seq | ATGCAGACTTTGAATTGTGACATATTCTACTGTGGTGAGGTTGATGTAGAAAAGGTGTACAAAATAAAGGCCAACGCTTCTACAGCTGCAAAATCTGAAGAAACATACTCCATGTCTACTAATTGTGCTGAAAAATTGGCAGAAGATATAGAGAAGTTCTTGAGAATCAGAAGTGATCCAGATTTAGACAAGTCGCCTTCCCCACAAGTTGGGAAAGAAAATCAGATGCCCAAAAAGCCAAGAGGCATTAAGCTCAAGGAAAAGGGCATCCATGGTTCAGCTAGACGTGTTGGTGGCTTAGAGAAAGCATCATCGCAGAGGAAGAGAAAGAAGAAGGATGACGATGTTCCGGACCATGTGCTAGAACCACAACCTGAGATGCAGTCACAACCACCTGCTACAGTAATGCAATCCTCTTCAGGCCACAAGATACTATCTAAATCATGCATAGCATTCAGAAGTTGTCAAAAATTGAACAGATCTGAAAAACAAAGGCAACAACATTGGGATTGGGATCTTACTGAACAAAATCAAGTCACACGGGCTGGATTGGATCCACAGGTTGGCGTAATACTTGACGATGTTAGCATCGATCACATCATGGACCTTCTCGATCCAAGCTCATGCACTTTGATGCAGCTGGACATTGATTAA
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| Protein seq | MQTLNCDIFYCGEVDVEKVYKIKANASTAAKSEETYSMSTNCAEKLAEDIEKFLRIRSDPDLDKSPSPQVGKENQMPKKPRGIKLKEKGIHGSARRVGGLEKASSQRKRKKKDDDVPDHVLEPQPEMQSQPPATVMQSSSGHKILSKSCIAFRSCQKLNRSEKQRQQHWDWDLTEQNQVTRAGLDPQVGVILDDVSIDHIMDLLDPSSCTLMQLDID
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g39790 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0475600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0020690 | RBH | 0.202172 | 2.573919 | 1.377812 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0020640 | RBH | 0.045811 | 0.000000 | 0.636603 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0020520 | RBH | 0.0 | 1.010219 | 0.827467 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0020520 | RBH | 0.043517 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0020620 | RBH | 3.997426 | 7.671567 | 4.985190 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0361600 | RBH | 2.931365 | 6.2780155 | 11.689623 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0020220 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0371200 | RBH | 3.325797 | 9.4719105 | 10.5136615 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0020480 | RBH | 0.000000 | 0.099828 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0020440 | RBH | 0.197207 | 7.411287 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0020520 | RBH | 1.648388 | 7.434691 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0020590 | RBH | 0.666073 | 0.685010 | 0.661401 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0020590 | RBH | 0.095170 | 2.712805 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G020030 | RBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0020480 | RBH | 0.138442 | 0.000000 | 0.000000 |
