Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_05g0468900 | OGI:05062760 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr05:23020500-23021600 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGCTAGCTGCCGCCACCACCACCACCACACGCCGGCCGGAGGACTGGTCAATCTCCCATGTGCCTCCACCGCATATAGCGTGGAGAGCTAGCTAGCTCTACTACTGTGGCTGTGGCCTGTGGGAGCAGGGAGCAATGGCCGCGCAGGAGAGCGCCGCGGGGACGACGAACCAGGTGATGCGGTGGCGGTACGGGGACGTCGACGACAGCAACTTCGCGGTGCACGGCCGCGCCGTGTACCTGCTGGTCGGGCTGCTCGTCGCCGTCGTGGTGTTCGTCGCCCTCTGCCTCTACCTCCGCTGGGCGTGCCACCGGTACACGCCCGACCCGGAGGCCTCCTCCTCGTCGTCGGCGGCGGGGGCGGCGGGGGCCGCAGCGGCGGCGTCGATGCACGGGCTCGACGCCGAGGCGATCGGGGGCCTGCCGGTGACGCTGTACCGCCCGCGCGACTCCTCGTCGCCTCCCGCCGGGAAGGGCGGCGGCGGTGGCGTCGACGACGACCAGGCGGCGCAGTGCTCGATATGCATCAGCGCGCTGGTCGCCGGCGAGAAGGTGAAGGCCCTCCCGCCGTGCGGCCACTGCTTCCACCCGGACTGCGTCGACGCCTGGCTCCGTTCCCAGCCCAGCTGCCCGCTCTGCCGGAGCCTCCTCCTCGCCGCCGCCGCCACCGCCGCCAAACCCGACGTCAACGGCGGCGACGACGACGACTCCGCCGTGTGAAGTGCAACCAGCGCGGCTAGCTGCCAACGCCAAGCTGCTCCGATCCGTCACCCCCACTGACGAAGCGGCCCCACCTGTAAGCTATCACACCACTTGCAGTTGCCTAGCTTGACCGCTTCAGAAAGATCTCGCAATTAAAAAAGAAAAACGCCCGGTTCAACGGCGCGCGGTGCCTAACCACCAATGCGCCACGGCGAGGTGCGTCCTGTCGTGTGGAGGTCGCCGGAAATGGAGCCCTCACCATCGTTCTTTAGTCGCCGGCGTGGGGGCCATGACCTCGCCGGCGATCACTTTAATCTCCTAGCTTTCTGTTCAAGTCTCCAGGGGGAATTTGGAGTGCTGTAAGCTGTACATACCTTTTGAGTATTTAAAACGGGAGAGG
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| CDS seq | ATGGCCGCGCAGGAGAGCGCCGCGGGGACGACGAACCAGGTGATGCGGTGGCGGTACGGGGACGTCGACGACAGCAACTTCGCGGTGCACGGCCGCGCCGTGTACCTGCTGGTCGGGCTGCTCGTCGCCGTCGTGGTGTTCGTCGCCCTCTGCCTCTACCTCCGCTGGGCGTGCCACCGGTACACGCCCGACCCGGAGGCCTCCTCCTCGTCGTCGGCGGCGGGGGCGGCGGGGGCCGCAGCGGCGGCGTCGATGCACGGGCTCGACGCCGAGGCGATCGGGGGCCTGCCGGTGACGCTGTACCGCCCGCGCGACTCCTCGTCGCCTCCCGCCGGGAAGGGCGGCGGCGGTGGCGTCGACGACGACCAGGCGGCGCAGTGCTCGATATGCATCAGCGCGCTGGTCGCCGGCGAGAAGGTGAAGGCCCTCCCGCCGTGCGGCCACTGCTTCCACCCGGACTGCGTCGACGCCTGGCTCCGTTCCCAGCCCAGCTGCCCGCTCTGCCGGAGCCTCCTCCTCGCCGCCGCCGCCACCGCCGCCAAACCCGACGTCAACGGCGGCGACGACGACGACTCCGCCGTGTGA
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| Protein seq | MAAQESAAGTTNQVMRWRYGDVDDSNFAVHGRAVYLLVGLLVAVVVFVALCLYLRWACHRYTPDPEASSSSSAAGAAGAAAAASMHGLDAEAIGGLPVTLYRPRDSSSPPAGKGGGGGVDDDQAAQCSICISALVAGEKVKALPPCGHCFHPDCVDAWLRSQPSCPLCRSLLLAAAATAAKPDVNGGDDDDSAV |
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| Function | RING-H2 finger protein ATL72 [UniProtKB/Swiss-Prot:Q9SG96] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0468900 | OsNip_05t0468900-01 | Chr05 | 23020500 | 23021600 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCCGCGCAGGAGAGCGCCGCGGGGACGACGAACCAGGTGATGCGGTGGCGGTACGGGGACGTCGACGACAGCAACTTCGCGGTGCACGGCCGCGCCGTGTACCTGCTGGTCGGGCTGCTCGTCGCCGTCGTGGTGTTCGTCGCCCTCTGCCTCTACCTCCGCTGGGCGTGCCACCGGTACACGCCCGACCCGGAGGCCTCCTCCTCGTCGTCGGCGGCGGGGGCGGCGGGGGCCGCAGCGGCGGCGTCGATGCACGGGCTCGACGCCGAGGCGATCGGGGGCCTGCCGGTGACGCTGTACCGCCCGCGCGACTCCTCGTCGCCTCCCGCCGGGAAGGGCGGCGGCGGTGGCGTCGACGACGACCAGGCGGCGCAGTGCTCGATATGCATCAGCGCGCTGGTCGCCGGCGAGAAGGTGAAGGCCCTCCCGCCGTGCGGCCACTGCTTCCACCCGGACTGCGTCGACGCCTGGCTCCGTTCCCAGCCCAGCTGCCCGCTCTGCCGGAGCCTCCTCCTCGCCGCCGCCGCCACCGCCGCCAAACCCGACGTCAACGGCGGCGACGACGACGACTCCGCCGTGTGA
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| Protein seq | MAAQESAAGTTNQVMRWRYGDVDDSNFAVHGRAVYLLVGLLVAVVVFVALCLYLRWACHRYTPDPEASSSSSAAGAAGAAAAASMHGLDAEAIGGLPVTLYRPRDSSSPPAGKGGGGGVDDDQAAQCSICISALVAGEKVKALPPCGHCFHPDCVDAWLRSQPSCPLCRSLLLAAAATAAKPDVNGGDDDDSAV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.443494 | 0.659632 | 3.811785 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0830900 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g39260 | RBH | 0.252065 | 0.372875 | 1.002896 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0468900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0020360 | RBH | 0.0 | 0.0 | 2.012993 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0020310 | RBH | 0.0 | 0.0 | 1.065867 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0020180 | RBH | 0.0 | 1.588602 | 2.504174 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0020190 | RBH | 0.0 | 0.024681 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0020320 | RBH | 0.0 | 0.0 | 5.557312 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0357000 | RBH | 0.7452505 | 22.6055295 | 0.627697 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0019920 | RBH | 0.0 | 0.119879 | 0.446832 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0367100 | RBH | 0.790265 | 22.993293 | 0.7469465 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0020150 | RBH | 0.0 | 0.101345 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0020150 | RBH | 0.0 | 0.368327 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0020210 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0020290 | RBH | 0.0 | 0.336405 | 0.133831 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0020300 | RBH | 0.0 | 4.003738 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G019770 | RBH | 0.0 | 0.0 | 1.181860 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0020190 | RBH | 0.0 | 0.0 | 0.656833 |
