Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_05g0441400 | OGI:05058560 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr05:21610392-21611511 | ||||||||
| Gene Symbol | OsOFP14, OsOFP21 | ||||||||||
| DNA seq | ACACACTTACACTCAATATTACAGTTTACTTGATTACTTCCACTCATGCAAGCTTGATACACGACGGGTAGGAGGAGTCATGTGCATTATCGGTAATCTGGCATTGATCCATGATTAACCGGAGGCTAGCTAGCTACTTCGTCATTCAATTGGAAAGTGCTACTACAGTTTAGCACAAAGACAAACGGAATTAATTAACACGCGCACACACACACGTAGGTAGCCAGCCCGCATTGTCTCGGGGCTAGCTTTAGTTATTTTACCTTAGCCTGAAAGAGATATGGCCGGCGGCGCCGCCGCCGGCGCTGCTGCTCTCCAGGTCGGTCCCGGCGAGAGTGAACGACGAGTGGCGGGAGGAGCTGGAGCCCCTTGCCGCCGTGGAGACGACAAGGTCGACGAACGCCGCGACGATGGCGGCGTGCGTCTCCTTGCCGTTGGCGCGGAGGTACCACCCTAGCATGGCCTCCAGCCAGCCCCAGTCGCCCACGCCGTGCGCGGCCAGCATCTCCGCCATGGACGCCCGGAAGTCCTCGTACGGATCCTCCGAGTCGAACGCCACCGCGACGCCGCCGCCGAACGACGCCGCGCCGTCGTCGTCGTCGTCGCCGCCGCCTGCGGCGCGGCGCACGGGCTTCTTATCGAGGATGGAGCTGGAGGGCGCGCGGGGCTCGAAGAGGAGGCGGTCGGAGCGGAGCCCGCGGACTATGGCGTCGGCCATGTCCTCGGCCGTGGCGGAGACGTCGGACTCGGTGGAGAGGCTGTCGGAGGCGCAGTCGTGGTGCATGCGCGCGGATGAGTTGGCGAAGGAGGACTCGCCGGAGTCGAGGAAGATCGACGCGATGGTCTTGGCCGCTGCGGCTGCCGAGGCGGCGGACGGTGAACGGAAGGAATGAGCTCTAGGGTGCTTGCAAGAAGGCCACATCCATGCCGGTGGAGTGGCCGCCGGAGGGGGAGGCGACGAGGGTGGGATGTCCCTGGCCGAGTTGATGGTGTAGAGGACGGAGCTTAGCGGCAGCTTCCTCACCATTGGCGTGGCAGTTGAAGCGAGTGCAGCCGCACTAGCCGCACTAGGAGGGTGTTTGTTTGTGTGTATGTGCGCCTTTGAAGTCGGATTTTCTTC
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| CDS seq | ATGGTGAGGAAGCTGCCGCTAAGCTCCGTCCTCTACACCATCAACTCGGCCAGGGACATCCCACCCTCGTCGCCTCCCCCTCCGGCGGCCACTCCACCGGCATGGATGTGGCCTTCTTGCAAGCACCCTAGAGCTCATTCCTTCCGTTCACCGTCCGCCGCCTCGGCAGCCGCAGCGGCCAAGACCATCGCGTCGATCTTCCTCGACTCCGGCGAGTCCTCCTTCGCCAACTCATCCGCGCGCATGCACCACGACTGCGCCTCCGACAGCCTCTCCACCGAGTCCGACGTCTCCGCCACGGCCGAGGACATGGCCGACGCCATAGTCCGCGGGCTCCGCTCCGACCGCCTCCTCTTCGAGCCCCGCGCGCCCTCCAGCTCCATCCTCGATAAGAAGCCCGTGCGCCGCGCCGCAGGCGGCGGCGACGACGACGACGACGGCGCGGCGTCGTTCGGCGGCGGCGTCGCGGTGGCGTTCGACTCGGAGGATCCGTACGAGGACTTCCGGGCGTCCATGGCGGAGATGCTGGCCGCGCACGGCGTGGGCGACTGGGGCTGGCTGGAGGCCATGCTAGGGTGGTACCTCCGCGCCAACGGCAAGGAGACGCACGCCGCCATCGTCGCGGCGTTCGTCGACCTTGTCGTCTCCACGGCGGCAAGGGGCTCCAGCTCCTCCCGCCACTCGTCGTTCACTCTCGCCGGGACCGACCTGGAGAGCAGCAGCGCCGGCGGCGGCGCCGCCGGCCATATCTCTTTCAGGCTAAGGTAA
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| Protein seq | MVRKLPLSSVLYTINSARDIPPSSPPPPAATPPAWMWPSCKHPRAHSFRSPSAASAAAAAKTIASIFLDSGESSFANSSARMHHDCASDSLSTESDVSATAEDMADAIVRGLRSDRLLFEPRAPSSSILDKKPVRRAAGGGDDDDDGAASFGGGVAVAFDSEDPYEDFRASMAEMLAAHGVGDWGWLEAMLGWYLRANGKETHAAIVAAFVDLVVSTAARGSSSSRHSSFTLAGTDLESSSAGGGAAGHISFRLR |
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| Function | Transcription repressor OFP13 [UniProtKB/Swiss-Prot:Q9FMC8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0441400 | OsNip_05t0441400-01 | Chr05 | 21610392 | 21611511 | - | RAP2018-11-26 | ||
| CDS seq | ATGGTGAGGAAGCTGCCGCTAAGCTCCGTCCTCTACACCATCAACTCGGCCAGGGACATCCCACCCTCGTCGCCTCCCCCTCCGGCGGCCACTCCACCGGCATGGATGTGGCCTTCTTGCAAGCACCCTAGAGCTCATTCCTTCCGTTCACCGTCCGCCGCCTCGGCAGCCGCAGCGGCCAAGACCATCGCGTCGATCTTCCTCGACTCCGGCGAGTCCTCCTTCGCCAACTCATCCGCGCGCATGCACCACGACTGCGCCTCCGACAGCCTCTCCACCGAGTCCGACGTCTCCGCCACGGCCGAGGACATGGCCGACGCCATAGTCCGCGGGCTCCGCTCCGACCGCCTCCTCTTCGAGCCCCGCGCGCCCTCCAGCTCCATCCTCGATAAGAAGCCCGTGCGCCGCGCCGCAGGCGGCGGCGACGACGACGACGACGGCGCGGCGTCGTTCGGCGGCGGCGTCGCGGTGGCGTTCGACTCGGAGGATCCGTACGAGGACTTCCGGGCGTCCATGGCGGAGATGCTGGCCGCGCACGGCGTGGGCGACTGGGGCTGGCTGGAGGCCATGCTAGGGTGGTACCTCCGCGCCAACGGCAAGGAGACGCACGCCGCCATCGTCGCGGCGTTCGTCGACCTTGTCGTCTCCACGGCGGCAAGGGGCTCCAGCTCCTCCCGCCACTCGTCGTTCACTCTCGCCGGGACCGACCTGGAGAGCAGCAGCGCCGGCGGCGGCGCCGCCGGCCATATCTCTTTCAGGCTAAGGTAA
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| Protein seq | MVRKLPLSSVLYTINSARDIPPSSPPPPAATPPAWMWPSCKHPRAHSFRSPSAASAAAAAKTIASIFLDSGESSFANSSARMHHDCASDSLSTESDVSATAEDMADAIVRGLRSDRLLFEPRAPSSSILDKKPVRRAAGGGDDDDDGAASFGGGVAVAFDSEDPYEDFRASMAEMLAAHGVGDWGWLEAMLGWYLRANGKETHAAIVAAFVDLVVSTAARGSSSSRHSSFTLAGTDLESSSAGGGAAGHISFRLR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 1.065566 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0863800 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g36990 | RBH | 0.0 | 0.0 | 0.252850 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0441400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0018760 | RBH | 0.0 | 0.0 | 0.708779 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0018700 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0018570 | RBH | 0.347193 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0018590 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0018810 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0333100 | RBH | 3.9554785 | 0.087186 | 1.12174 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0018330 | RBH | 0.0 | 0.0 | 0.101603 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0344100 | RBH | 4.415167 | 0.0110815 | 8.2827875 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0018630 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0018570 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0018690 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0018760 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0018760 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G018260 | RBH | 0.0 | 0.0 | 0.583129 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0018570 | RBH | 0.0 | 0.0 | 0.0 |
