Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_05g0393900 | OGI:05051700 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr05:19166560-19168329 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGTGGAACAAAAGATCATCTCAATCTGAGCATTCTTTCCAATATATGGCAAACTTTGTACATTTCTACGCTTTGACAGTATCCATTCTTACAAAGAGCCTTGATCAGTTCCTGGTAAATATACACTTCTATTATAAAGCCTTGTCCAAGAACACATCCAATTAGAGTATGCAATTGACCAAGCATACCACCAACAATTAGACCTCGTATAATACTGAGAAATGCAGATGGGAAGAAGTCGTCCTCAAGTGATTGGTAAAAACAGCAAAGAGCCACCAAGAACTTCTCTTCTCTACAGAGACAATCAATCACAAGACTGTAGGTGATGTCATTGGGAGCAATGCCTCCCTCAATCATCTGATAAAGTAAGAGGCAAACTTCATTGCCTTCCCCAGAAATACTGAGATGACGGATTAAAGTATTGTATGTGATAACGGTAGCTACAAACTCTTTGCTTCTCAGCAGAAAAAGCGCTTTATGAAGTCTCCCCAATTTACAGAGGCTGTGGACAACAATGTTGAAGGTCCAGCTATTTGGAGCAATGCCTTTCTTGGCCATGTCAGTGAAAAGTTTGACAACAGACAGCCATCTGTGCTCATCGCAAAGCTTCCTCATCACCGTGTTATAATTGACAACATTGGCATCCCACCCAAGCTCTGCGCTGCACTCCAAGAGGCGTTTTGCAGCCCATGCAGTTGAGCTACGACAAACACCATCAAGAAGGATATTCAGAGTCACCTCACTAGGTTGTAACCCGTTGGATAACATCTTATCAACCAATGCAAAGCTCTTATCTATTCTGCCGGCTTTGCATAGCCCATCCATGTAACTGCTATATGTGATTACATCTGGTGTCCACCCTTTTGCAGTGCTCTCCTCAAGAAGGGCATCTACCTCCTCGAAAGCCCCAACCTTGCAGAGAGCTTCAACCAAGACATTGTAAGTGGCTGTACTTGGAGCAAATCCACTGGCAATCATAGTGTTCAACAGCCTCTTCGCCTCATGTATCCTCCCACCCGTGCAATATGCGTGCACGATAGGTGTATATGTGTGCGCATTGGGTTGGCAACCTTCCTCCAGCATCAAGTCCAGCACGCCGAGAGCTTCAGCCACCTGCCCAGCGCTGCACAGCCCAGATATCAACGTCGAGTAGGTGACCACGTCAGGGGCCACGCCATTCGCCACCATCCAGCGCACGACCTCGTAGGCGGCGTCGAACCGCCGCAGGCGGCAGGCGTACACCCCGACGAGCACCGTGCACGCCGCGGCGTCGGGCGCGACGCCATCCGCGGCCATGGCGTCGAGCACGGCGAGCGCCGCGCCCGGGCGGGACGCGGACGACAGCGCCGCGGCGACCGTTGTGAAGCAGGCGGCGTCGGGGCGGCGCCGGAGGAGGGCGCGCATTTCGTCGAGCAGGTGGAGGGCGCGGTCCGCGCCGGCGCCGTCCCGCGTCCCCGCGTGCGCGGACATGAGGCGGTTGTAGTCGTAGGGGTGCGGGGACCGCGGCCGTGTAGGGGGCGGCGGCGTTCCCGGCCGGGGACGGTGGTCGGAGAGCTCCTTGGCGAGGGCGGCGAAGCGGAGGAGGGGGAGGAAGCGGCGGTCTCGGTGTGGGGCGGAGGAGAGGCAGCGGCGGCGGAGGAGGAGGAGGCGAGGGAGGGGACGGGAGGGGGAGCGCATGGGGTGGTGCGGGAGGAGGCGGCGGCGGCGGCGACATCGGAGAGCGGCGGCCGCGGGTGCAGCCTTGCAGCCCACGGCGGAGCGCGCGACGTTC
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| CDS seq | ATGCGCTCCCCCTCCCGTCCCCTCCCTCGCCTCCTCCTCCTCCGCCGCCGCTGCCTCTCCTCCGCCCCACACCGAGACCGCCGCTTCCTCCCCCTCCTCCGCTTCGCCGCCCTCGCCAAGGAGCTCTCCGACCACCGTCCCCGGCCGGGAACGCCGCCGCCCCCTACACGGCCGCGGTCCCCGCACCCCTACGACTACAACCGCCTCATGTCCGCGCACGCGGGGACGCGGGACGGCGCCGGCGCGGACCGCGCCCTCCACCTGCTCGACGAAATGCGCGCCCTCCTCCGGCGCCGCCCCGACGCCGCCTGCTTCACAACGGTCGCCGCGGCGCTGTCGTCCGCGTCCCGCCCGGGCGCGGCGCTCGCCGTGCTCGACGCCATGGCCGCGGATGGCGTCGCGCCCGACGCCGCGGCGTGCACGGTGCTCGTCGGGGTGTACGCCTGCCGCCTGCGGCGGTTCGACGCCGCCTACGAGGTCGTGCGCTGGATGGTGGCGAATGGCGTGGCCCCTGACGTGGTCACCTACTCGACGTTGATATCTGGGCTGTGCAGCGCTGGGCAGGTGGCTGAAGCTCTCGGCGTGCTGGACTTGATGCTGGAGGAAGGTTGCCAACCCAATGCGCACACATATACACCTATCGTGCACGCATATTGCACGGGTGGGAGGATACATGAGGCGAAGAGGCTGTTGAACACTATGATTGCCAGTGGATTTGCTCCAAGTACAGCCACTTACAATGTCTTGGTTGAAGCTCTCTGCAAGGTTGGGGCTTTCGAGGAGGTAGATGCCCTTCTTGAGGAGAGCACTGCAAAAGGGTGGACACCAGATGTAATCACATATAGCAGTTACATGGATGGGCTATGCAAAGCCGGCAGAATAGATAAGAGCTTTGCATTGGTTGATAAGATGTTATCCAACGGGTTACAACCTAGTGAGGTGACTCTGAATATCCTTCTTGATGGTGTTTGTCGTAGCTCAACTGCATGGGCTGCAAAACGCCTCTTGGAGTGCAGCGCAGAGCTTGGGTGGGATGCCAATGTTGTCAATTATAACACGGTGATGAGGAAGCTTTGCGATGAGCACAGATGGCTGTCTGTTGTCAAACTTTTCACTGACATGGCCAAGAAAGGCATTGCTCCAAATAGCTGGACCTTCAACATTGTTGTCCACAGCCTCTGTAAATTGGGGAGACTTCATAAAGCGCTTTTTCTGCTGAGAAGCAAAGAGTTTGTAGCTACCGTTATCACATACAATACTTTAATCCGTCATCTCAGTATTTCTGGGGAAGGCAATGAAGTTTGCCTCTTACTTTATCAGATGATTGAGGGAGGCATTGCTCCCAATGACATCACCTACAGTCTTGTGATTGATTGTCTCTGTAGAGAAGAGAAGTTCTTGGTGGCTCTTTGCTGTTTTTACCAATCACTTGAGGACGACTTCTTCCCATCTGCATTTCTCAGTATTATACGAGGTCTAATTGTTGGTGGTATGCTTGGTCAATTGCATACTCTAATTGGATGTGTTCTTGGACAAGGCTTTATAATAGAAGTGTATATTTACCAGGAACTGATCAAGGCTCTTTGTAAGAATGGATACTGTCAAAGCGTAGAAATGTACAAAGTTTGCCATATATTGGAAAGAATGCTCAGATTGAGATGA
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| Protein seq | MRSPSRPLPRLLLLRRRCLSSAPHRDRRFLPLLRFAALAKELSDHRPRPGTPPPPTRPRSPHPYDYNRLMSAHAGTRDGAGADRALHLLDEMRALLRRRPDAACFTTVAAALSSASRPGAALAVLDAMAADGVAPDAAACTVLVGVYACRLRRFDAAYEVVRWMVANGVAPDVVTYSTLISGLCSAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYCTGGRIHEAKRLLNTMIASGFAPSTATYNVLVEALCKVGAFEEVDALLEESTAKGWTPDVITYSSYMDGLCKAGRIDKSFALVDKMLSNGLQPSEVTLNILLDGVCRSSTAWAAKRLLECSAELGWDANVVNYNTVMRKLCDEHRWLSVVKLFTDMAKKGIAPNSWTFNIVVHSLCKLGRLHKALFLLRSKEFVATVITYNTLIRHLSISGEGNEVCLLLYQMIEGGIAPNDITYSLVIDCLCREEKFLVALCCFYQSLEDDFFPSAFLSIIRGLIVGGMLGQLHTLIGCVLGQGFIIEVYIYQELIKALCKNGYCQSVEMYKVCHILERMLRLR |
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| Function | Protein Rf1, mitochondrial [UniProtKB/Swiss-Prot:Q76C99] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0393900 | OsNip_05t0393900-00 | Chr05 | 19166560 | 19168329 | - | RAP2018-11-26 | ||
| CDS seq | ATGCGCTCCCCCTCCCGTCCCCTCCCTCGCCTCCTCCTCCTCCGCCGCCGCTGCCTCTCCTCCGCCCCACACCGAGACCGCCGCTTCCTCCCCCTCCTCCGCTTCGCCGCCCTCGCCAAGGAGCTCTCCGACCACCGTCCCCGGCCGGGAACGCCGCCGCCCCCTACACGGCCGCGGTCCCCGCACCCCTACGACTACAACCGCCTCATGTCCGCGCACGCGGGGACGCGGGACGGCGCCGGCGCGGACCGCGCCCTCCACCTGCTCGACGAAATGCGCGCCCTCCTCCGGCGCCGCCCCGACGCCGCCTGCTTCACAACGGTCGCCGCGGCGCTGTCGTCCGCGTCCCGCCCGGGCGCGGCGCTCGCCGTGCTCGACGCCATGGCCGCGGATGGCGTCGCGCCCGACGCCGCGGCGTGCACGGTGCTCGTCGGGGTGTACGCCTGCCGCCTGCGGCGGTTCGACGCCGCCTACGAGGTCGTGCGCTGGATGGTGGCGAATGGCGTGGCCCCTGACGTGGTCACCTACTCGACGTTGATATCTGGGCTGTGCAGCGCTGGGCAGGTGGCTGAAGCTCTCGGCGTGCTGGACTTGATGCTGGAGGAAGGTTGCCAACCCAATGCGCACACATATACACCTATCGTGCACGCATATTGCACGGGTGGGAGGATACATGAGGCGAAGAGGCTGTTGAACACTATGATTGCCAGTGGATTTGCTCCAAGTACAGCCACTTACAATGTCTTGGTTGAAGCTCTCTGCAAGGTTGGGGCTTTCGAGGAGGTAGATGCCCTTCTTGAGGAGAGCACTGCAAAAGGGTGGACACCAGATGTAATCACATATAGCAGTTACATGGATGGGCTATGCAAAGCCGGCAGAATAGATAAGAGCTTTGCATTGGTTGATAAGATGTTATCCAACGGGTTACAACCTAGTGAGGTGACTCTGAATATCCTTCTTGATGGTGTTTGTCGTAGCTCAACTGCATGGGCTGCAAAACGCCTCTTGGAGTGCAGCGCAGAGCTTGGGTGGGATGCCAATGTTGTCAATTATAACACGGTGATGAGGAAGCTTTGCGATGAGCACAGATGGCTGTCTGTTGTCAAACTTTTCACTGACATGGCCAAGAAAGGCATTGCTCCAAATAGCTGGACCTTCAACATTGTTGTCCACAGCCTCTGTAAATTGGGGAGACTTCATAAAGCGCTTTTTCTGCTGAGAAGCAAAGAGTTTGTAGCTACCGTTATCACATACAATACTTTAATCCGTCATCTCAGTATTTCTGGGGAAGGCAATGAAGTTTGCCTCTTACTTTATCAGATGATTGAGGGAGGCATTGCTCCCAATGACATCACCTACAGTCTTGTGATTGATTGTCTCTGTAGAGAAGAGAAGTTCTTGGTGGCTCTTTGCTGTTTTTACCAATCACTTGAGGACGACTTCTTCCCATCTGCATTTCTCAGTATTATACGAGGTCTAATTGTTGGTGGTATGCTTGGTCAATTGCATACTCTAATTGGATGTGTTCTTGGACAAGGCTTTATAATAGAAGTGTATATTTACCAGGAACTGATCAAGGCTCTTTGTAAGAATGGATACTGTCAAAGCGTAGAAATGTACAAAGTTTGCCATATATTGGAAAGAATGCTCAGATTGAGATGA
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| Protein seq | MRSPSRPLPRLLLLRRRCLSSAPHRDRRFLPLLRFAALAKELSDHRPRPGTPPPPTRPRSPHPYDYNRLMSAHAGTRDGAGADRALHLLDEMRALLRRRPDAACFTTVAAALSSASRPGAALAVLDAMAADGVAPDAAACTVLVGVYACRLRRFDAAYEVVRWMVANGVAPDVVTYSTLISGLCSAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYCTGGRIHEAKRLLNTMIASGFAPSTATYNVLVEALCKVGAFEEVDALLEESTAKGWTPDVITYSSYMDGLCKAGRIDKSFALVDKMLSNGLQPSEVTLNILLDGVCRSSTAWAAKRLLECSAELGWDANVVNYNTVMRKLCDEHRWLSVVKLFTDMAKKGIAPNSWTFNIVVHSLCKLGRLHKALFLLRSKEFVATVITYNTLIRHLSISGEGNEVCLLLYQMIEGGIAPNDITYSLVIDCLCREEKFLVALCCFYQSLEDDFFPSAFLSIIRGLIVGGMLGQLHTLIGCVLGQGFIIEVYIYQELIKALCKNGYCQSVEMYKVCHILERMLRLR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.413803 | 0.565820 | 0.168565 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g32730 | RBH | 0.298019 | 0.405291 | 0.046211 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0393900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0016030 | RBH | 0.052232 | 0.988117 | 0.381593 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0016030 | RBH | 0.0 | 0.647056 | 0.191962 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0015850 | RBH | 0.253397 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0015890 | RBH | 0.0 | 0.035491 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0016050 | RBH | 0.629866 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0293600 | RBH | 0.364904 | 0.9823925 | 0.375303 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0015610 | RBH | 0.068736 | 0.0 | 0.088729 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0276500 | SBH | 1.5814175 | 6.843718 | 4.4453595 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0015880 | RBH | 0.099692 | 0.142347 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0015860 | RBH | 0.0 | 1.817715 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0015900 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0015950 | RBH | 0.103194 | 0.0 | 0.138514 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0016000 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G015490 | RBH | 0.094334 | 0.416429 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0015810 | RBH | 0.0 | 0.0 | 0.472272 |
