Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_05g0392400 | OGI:05051530 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr05:19097132-19099197 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTTATGGTCTATATATGAAACTAACATCTGAAAAGGTTGGCTGCACTGGAGAAAACAAAGTGAGAACTATTCTTCTTGAGAACCCTGGTTTGCTTGTTCTCGATGAAGGGCACACACCTAGGAATGAGCGCAGTGTTATTTGGAAGACACTAGGAAAAGTTAAAACCGAGAAGCGTATAATTCTATCTGGAACTCCTTTCCAAAATAATTTTCTTGAGCTTTACAATATTCTCTGTTTGGTGAGGCCTAGGTTTGGTGAAATGTTTTTGACTAAAACAAGAGTGGGTCGAAGGCACTGTGTCTCAAAGAAGCAACGGGATAAATTTTCTGATAAATATGAGAAAGGAGTTTGGGCTTCCTTAACTAGTAATGTAACTGATGATAATGCAGAAAAGGTAAGATCAATACTGAAACCATTTGTTCATATCCATAATGGGACTATTCTTCGAACTCTTCCGGGGCTCAGAGAGTGTGTGATAGTTCTGAAACCTCTACCGCTTCAAAAGAGTATCATTAGAAAGGTAGAAAATGTTGGATCTGGTAACAATTTTGAACATGAGTATGTTATTTCTTTAGCCTCCACACATCCTTCACTTGTAAACGCAATTAACATGACGGAAGAAGAAGCTTCCCTTATTGATAAACCTATGCTTGAAAGATTAAGGTCTAATCCTTATGAAGGAGTAAAAACAAGGTTTGTAATGGAAGTTGTTCGTTTGTGTGAAGCATTGAAAGAAAAGGTATTGATTTTTAGTCAATTTATTCAGCCATTAGAATTGATAAAGGAACATCTTCGTAAGATTTTCAAATGGAGAGAAGGAAAAGAGATTCTCCAAATGGATGGGAAGATCCTCCCGAGATATCGTCAAAATTCAATTGAGGTTTTCAATAATCCGGATAGTGACGCGAGGGTGTTACTTGCATCTACAAGAGCTTGTTGTGAAGGGATTAGCCTAACAGGGGCTTCTAGAGTTGTTCTTCTAGATGTTGTCTGGAATCCAGCTGTTGGAAGGCAAGCTATCAGCAGAGCATTTAGGATAGGACAGAAGAAATTTGTATATACATACAATTTAATAACTTATGGAACAGGTGAAGGTGACAAATATGATAGGCAAGCAGAAAAGGACCACTTGTCCAAGTTGGTCTTCTCTACAGAAGACGAGTTCAGTAATGTTAGGAACATGCTTTCAAAAGCTGAAATGGAGCACTGTTCTAAGTTGATATCCGAGGATAAGGTTCTGGAGGAAATGACTTCCCATGACCAGCTGAAAGGCATGTTTTTAAAGATTCATTATCCACCAACTGAGTCAAACATTGTTTTTACTTACAACCAGATTGCTCCTGAGTTAAGTTAATAATGACTGGCATCAGATGGATTCATTCTTTAAGGTGGTGCTCTCGAACTTTTGACTTCTTATTGTTGTGGCTAGTTCTAGAATGATCAGATATTGATGGAATGCGATGTGCATGTGTAATGCAGCTGACTAGCTAGCGTGAGGACAGTGAGACTGAATACAGCATAAATTTTCAGCTGTTTTTGTTGCAGATGATGATTCATTAATTATAAGGTGAACCCTTGTGTAATCGCACTGGAAGAACATACTATTGCTATGGCATCCGTGGTCCAGAGTTAAATAGTTCTAGTTGACTGTAAGTTTGTTCCACTGACTTCATCATGTTATAAAGTTGACTTGCATACAATTAGTAGTCAGGTGGCTGCTGATTTCCATTATTTTCTTTTAATGGACAGCTATGTGTTTCTGTAGGGCATGCACTGAGAAATTCCTGATGCAGCAGGCTGTGGTATCCCTATACTCTATCAAATAATGGATCTTGGGTTGCATTATGTCACGCATGATCAAATAGGACTAGTCAGTTCTTACATAATGGGTGCAAAGCATCAACCAATCTAGAATCGGCACAAGGTCGCCGGCTGAAAAATCTTCTTGTGTATAATAATGAATCTCCAGATGCGATGTATAATAATGCTATTGGTTCATTTCTGGTGGTCCAATATTTGTTGAACTAAACACAATCTTAATATGAATAAGCGGACTAGTTTCAGC
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| CDS seq | TATGGTCTATATATGAAACTAACATCTGAAAAGGTTGGCTGCACTGGAGAAAACAAAGTGAGAACTATTCTTCTTGAGAACCCTGGTTTGCTTGTTCTCGATGAAGGGCACACACCTAGGAATGAGCGCAGTGTTATTTGGAAGACACTAGGAAAAGTTAAAACCGAGAAGCGTATAATTCTATCTGGAACTCCTTTCCAAAATAATTTTCTTGAGCTTTACAATATTCTCTGTTTGGTGAGGCCTAGGTTTGGTGAAATGTTTTTGACTAAAACAAGAGTGGGTCGAAGGCACTGTGTCTCAAAGAAGCAACGGGATAAATTTTCTGATAAATATGAGAAAGGAGTTTGGGCTTCCTTAACTAGTAATGTAACTGATGATAATGCAGAAAAGGTAAGATCAATACTGAAACCATTTGTTCATATCCATAATGGGACTATTCTTCGAACTCTTCCGGGGCTCAGAGAGTGTGTGATAGTTCTGAAACCTCTACCGCTTCAAAAGAGTATCATTAGAAAGGTAGAAAATGTTGGATCTGGTAACAATTTTGAACATGAGTATGTTATTTCTTTAGCCTCCACACATCCTTCACTTGTAAACGCAATTAACATGACGGAAGAAGAAGCTTCCCTTATTGATAAACCTATGCTTGAAAGATTAAGGTCTAATCCTTATGAAGGAGTAAAAACAAGGTTTGTAATGGAAGTTGTTCGTTTGTGTGAAGCATTGAAAGAAAAGGTATTGATTTTTAGTCAATTTATTCAGCCATTAGAATTGATAAAGGAACATCTTCGTAAGATTTTCAAATGGAGAGAAGGAAAAGAGATTCTCCAAATGGATGGGAAGATCCTCCCGAGATATCGTCAAAATTCAATTGAGGTTTTCAATAATCCGGATAGTGACGCGAGGGTGTTACTTGCATCTACAAGAGCTTGTTGTGAAGGGATTAGCCTAACAGGGGCTTCTAGAGTTGTTCTTCTAGATGTTGTCTGGAATCCAGCTGTTGGAAGGCAAGCTATCAGCAGAGCATTTAGGATAGGACAGAAGAAATTTGTATATACATACAATTTAATAACTTATGGAACAGGTGAAGGTGACAAATATGATAGGCAAGCAGAAAAGGACCACTTGTCCAAGTTGGTCTTCTCTACAGAAGACGAGTTCAGTAATGTTAGGAACATGCTTTCAAAAGCTGAAATGGAGCACTGTTCTAAGTTGATATCCGAGGATAAGGTTCTGGAGGAAATGACTTCCCATGACCAGCTGAAAGGCATGTTTTTAAAGATTCATTATCCACCAACTGAGTCAAACATTGTTTTTACTTACAACCAGATTGCTCCTGAGTTAAGTTAA
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| Protein seq | YGLYMKLTSEKVGCTGENKVRTILLENPGLLVLDEGHTPRNERSVIWKTLGKVKTEKRIILSGTPFQNNFLELYNILCLVRPRFGEMFLTKTRVGRRHCVSKKQRDKFSDKYEKGVWASLTSNVTDDNAEKVRSILKPFVHIHNGTILRTLPGLRECVIVLKPLPLQKSIIRKVENVGSGNNFEHEYVISLASTHPSLVNAINMTEEEASLIDKPMLERLRSNPYEGVKTRFVMEVVRLCEALKEKVLIFSQFIQPLELIKEHLRKIFKWREGKEILQMDGKILPRYRQNSIEVFNNPDSDARVLLASTRACCEGISLTGASRVVLLDVVWNPAVGRQAISRAFRIGQKKFVYTYNLITYGTGEGDKYDRQAEKDHLSKLVFSTEDEFSNVRNMLSKAEMEHCSKLISEDKVLEEMTSHDQLKGMFLKIHYPPTESNIVFTYNQIAPELS |
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| Function | SNF2 domain-containing protein CLASSY 3 [UniProtKB/Swiss-Prot:F4I8S3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0392400 | OsNip_05t0392400-01 | Chr05 | 19097132 | 19099197 | + | RAP2018-11-26 | ||
| CDS seq | TATGGTCTATATATGAAACTAACATCTGAAAAGGTTGGCTGCACTGGAGAAAACAAAGTGAGAACTATTCTTCTTGAGAACCCTGGTTTGCTTGTTCTCGATGAAGGGCACACACCTAGGAATGAGCGCAGTGTTATTTGGAAGACACTAGGAAAAGTTAAAACCGAGAAGCGTATAATTCTATCTGGAACTCCTTTCCAAAATAATTTTCTTGAGCTTTACAATATTCTCTGTTTGGTGAGGCCTAGGTTTGGTGAAATGTTTTTGACTAAAACAAGAGTGGGTCGAAGGCACTGTGTCTCAAAGAAGCAACGGGATAAATTTTCTGATAAATATGAGAAAGGAGTTTGGGCTTCCTTAACTAGTAATGTAACTGATGATAATGCAGAAAAGGTAAGATCAATACTGAAACCATTTGTTCATATCCATAATGGGACTATTCTTCGAACTCTTCCGGGGCTCAGAGAGTGTGTGATAGTTCTGAAACCTCTACCGCTTCAAAAGAGTATCATTAGAAAGGTAGAAAATGTTGGATCTGGTAACAATTTTGAACATGAGTATGTTATTTCTTTAGCCTCCACACATCCTTCACTTGTAAACGCAATTAACATGACGGAAGAAGAAGCTTCCCTTATTGATAAACCTATGCTTGAAAGATTAAGGTCTAATCCTTATGAAGGAGTAAAAACAAGGTTTGTAATGGAAGTTGTTCGTTTGTGTGAAGCATTGAAAGAAAAGGTATTGATTTTTAGTCAATTTATTCAGCCATTAGAATTGATAAAGGAACATCTTCGTAAGATTTTCAAATGGAGAGAAGGAAAAGAGATTCTCCAAATGGATGGGAAGATCCTCCCGAGATATCGTCAAAATTCAATTGAGGTTTTCAATAATCCGGATAGTGACGCGAGGGTGTTACTTGCATCTACAAGAGCTTGTTGTGAAGGGATTAGCCTAACAGGGGCTTCTAGAGTTGTTCTTCTAGATGTTGTCTGGAATCCAGCTGTTGGAAGGCAAGCTATCAGCAGAGCATTTAGGATAGGACAGAAGAAATTTGTATATACATACAATTTAATAACTTATGGAACAGGTGAAGGTGACAAATATGATAGGCAAGCAGAAAAGGACCACTTGTCCAAGTTGGTCTTCTCTACAGAAGACGAGTTCAGTAATGTTAGGAACATGCTTTCAAAAGCTGAAATGGAGCACTGTTCTAAGTTGATATCCGAGGATAAGGTTCTGGAGGAAATGACTTCCCATGACCAGCTGAAAGGCATGTTTTTAAAGATTCATTATCCACCAACTGAGTCAAACATTGTTTTTACTTACAACCAGATTGCTCCTGAGTTAAGTTAA
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| Protein seq | YGLYMKLTSEKVGCTGENKVRTILLENPGLLVLDEGHTPRNERSVIWKTLGKVKTEKRIILSGTPFQNNFLELYNILCLVRPRFGEMFLTKTRVGRRHCVSKKQRDKFSDKYEKGVWASLTSNVTDDNAEKVRSILKPFVHIHNGTILRTLPGLRECVIVLKPLPLQKSIIRKVENVGSGNNFEHEYVISLASTHPSLVNAINMTEEEASLIDKPMLERLRSNPYEGVKTRFVMEVVRLCEALKEKVLIFSQFIQPLELIKEHLRKIFKWREGKEILQMDGKILPRYRQNSIEVFNNPDSDARVLLASTRACCEGISLTGASRVVLLDVVWNPAVGRQAISRAFRIGQKKFVYTYNLITYGTGEGDKYDRQAEKDHLSKLVFSTEDEFSNVRNMLSKAEMEHCSKLISEDKVLEEMTSHDQLKGMFLKIHYPPTESNIVFTYNQIAPELS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.554171 | 0.604684 | 2.489416 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g32610 | RBH | 0.522304 | 0.368446 | 0.351672 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0392400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0015940 | RBH | 0.567505 | 1.424609 | 2.823149 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0015940 | RBH | 0.000000 | 1.167207 | 1.164554 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0015760 | RBH | 1.370570 | 3.283207 | 3.592714 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0015800 | RBH | 0.083966 | 0.074323 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0015960 | RBH | 1.997172 | 2.573117 | 5.125019 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0292300 | RBH | 0.6124695 | 2.937152 | 0.6707405 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0015520 | RBH | 0.285795 | 0.175566 | 0.510999 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0302400 | RBH | 0.7936655 | 2.1303985 | 3.8124395 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0015790 | RBH | 0.112482 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0015770 | RBH | 0.123250 | 2.046773 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0015810 | RBH | 1.029439 | 5.609832 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0015860 | RBH | 0.334004 | 0.221468 | 0.241874 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0015910 | RBH | 0.140593 | 0.567634 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G015410 | RBH | 0.451484 | 1.686340 | 2.071491 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0015720 | RBH | 0.310329 | 0.0 | 2.727220 |
