Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_05g0372100 | OGI:05048420 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr05:17922839-17930282 | ||||||||
| Gene Symbol | RLCK185, OsRLCK185 | ||||||||||
| DNA seq | ATCTCACTCTTGCCCCTGGGCTGACTTTTGCCCTCCCTTGGGCATCCATCTCCTCTCCCTCCCTCCCCTCCCCTCCCATCCCTACCCCCAAAATCGCCGACCGACCGCCCCCAAATCCCATCCAAGAGCCGTCGCCTCCTCCAAAGATCGGATTTCGAGACCCCCCAGATCGGGGGGAGAGATCCCCGTGTCGTCTGGTGTGGTGGGTCGGCCTCCGCCCCCCGGCCGCCGCGCTTCTCTTGATCTTTCTTTCTTTTTTTTGATTTTTTTGCGTTTCCCCTCCGGGAGAGGGGAGGGGAGGAGGGTTCTTGGATGGGCTGCTTTCCGTGCTTCGGGTCGGGCGGCAAGGGGGAGGCGAAGAAGGGCGGCGGCGGGCGCAAGGACGGCGGCTCGGCGGATCGCCGCGTCGCCCGGGTCGGATCAGGTGCGGTTCTTGTGGTGGGGGTGTGGGGGGAAAGGGTTGGATCTTGGGGGTGGTTTTGTTTGTAGGAAATGGTAGCTGATGATTTGCTCCGATGTGGTCAGTTCATGAGATTTTGGTGTGATTCGGATCAATGGGCGATTCGAACTTTGTGCTAACACGTATTCGATTTTAGCGAATGGGTTGGAGACAATCTCGAGGTTTCGGCGCGGATGGTGGTGTGGTGGTATTTGGGAGATTTTCCTTTTGTTTGTGTTAGGCTATTTTGATGGTATGAGTGCTTGATGTTAGTATGCGTTACTTATCTATTTGTAGTTTATCTGTGATGTTTTGGATCGGTAAGCTAGGTCATCCTTTTTGGTTTATCCTATAACTGATAGAAGCCAGCGGCTTTAGTGATATTTTCGTGGATGGATAGGAGGTTGTGGATGGATAGGAGGTTGCAGTATGACTCTTGCAGTATTGGATTCAGGGGGACAAGGAAATTAATGTTTCACTTCTTGTTTATACTGATAAATGATGTGGAAGTACTTGCAAGACTGCTATAGATGTATATGAAGAAATGGACGAGTCAGGGAGACTTAGCTTCCCCCCAGGAAATATCACCTGCAATTTTAGCAATAATCGGTAACAATGTGGTTAACCTTGTTAGTAAAGCTGACCTTTGAAAGCATTCTATCTGTTTGACTTATTCTCTGGGCTACAATGACAAACCTATGGACAACACATGCTAGTGTTGGTACGTATGGTAGAAGACCCAGATGCAACATCAAACAAGTGCCAAAGAAGCGTCATTTTGTACTTTTATTTATTTCCATACAACATGGTACATTCACCACAAAATTTTAATCCTGGTTTGTGATGACCAAAATGGCCAATGTGTTTTAGAATGATTAGGCAGGTTATCTCAGTTCTTCCACTGGATATGTTTTTAATATGCACAACACATCTGTAAATGGACTGGAAAATTATGTGATTTTCATGAAAGATCTTCTATATGACATTCATCAAAACGGAAATGCATATTTCAATTTCTCTAATATAATTCTCTGTCTGGATTTTTGTCCTATGCTCCAACTCCAACATGCATGCTGACAAAAGTGAAACCTTTCCGACTTTGTCCTGACTTAAACATATTTTTTATTCACCCCCCTCAATCGATAAGACAATAAATCAATATAACTTGTATAATGATGATATTGAGCGCAGTTTAGCTGGCCATGGATTCCGTTTGTGTTTCAAGATGAGGCATTGATTTTGTAGGGATTTTTCATCAGACTGTAAATGGTCTAATCATCAATAACTAAAATTGTACCTGCTTTTCACATTTGTTATTATAAAAGCTCAAACTATCGTAATATGAGGAGGCACCACATTTTCTCCGAGTGGTCAAAATGTACAACTCTAATCAGAGGGAGAAGAAATGAGTCAGCATTTGGTGTGCCCATAAATAAGAGAAAATTCCTTATATACCATTGGATGTTACCCTATTCCTCTATTGCCATTCAAAAATTGACGTTTAATTATTTTTCACATTCTCATTTCTTGTTCCTCTTTCTTCTCCTTTCCTCTCTTCCTCTCTCTCCTCACCTGCTGTTTCCTTTTTATTTCTTCCTTCCTAGCCTGTTCTGTCTTCGAGGATGTTACCCTATTCCTCCATGGCCTTGTTCCTCTTTCTTCTCCTTTCCTCTCTTCCTCTCTCTCCTCACCTGCTGTTTCCTTTTTATTTCTTCCTTCCTAGCCTGTTCTGTCTTCAAGGTCTGCTGTACTGAGCACCGTGGATGATTACATCAAGCCAGAATACCATGAAGTTGGGGCCCATTGTCAATAGAGACTGAGGTCAAAGCCATAATGTTGGGGGACAAATACAAAGAATGGCTGAAATTGAAGCCATGACGACGGGAAGAGCACATTGGCAGCAGTGTGAGCTTGGCAGTGCACAAATTGAGGCACGATGGCACATGAAGTTAAAGCTCCTCGTCCAAGGATTAGGCTGTCTGCGCTTGAAATCAGAACACACTGGCAACAAAATCTAAGTTCCTTCCTCTCGTTCTAAACCCAAGGTCCATGGTGGCTAACTGGCCATGACCTTGAAGGCAGTGGTTGTGTTTGGGAATGGTGTGGATGTGTCTAGCAGCAGTAGAAAGACATTAAGTCCGTCCACTGACAACAATGCTTGGCTGCAGGGGGCTGCATCCATGGCTGCCGAAATCAAAACTTGAGGGTGGCAAAGCTTTTTTGGCTGTGGGGACGAGCTCAGTGGCAGCTGAATTTGTAATCAATGGTACATCGTTGGGGCTGGGAGAGGTGAGGGAGGCAACTAAATTACATGGGTGATTATGTGATTGGGATAGGAGAGGGAAGTCCAGCAGTTGAGCCGCTTAGAGTACCTTGTGGACCATGGTAGCGTGCCATCTGGCATGGTGGGTGAATAAGAGAGAGGAGTATTTAGTGCAGCTGGCTGTAGGTTGATATTAGTGCTAGTAGAGTAGGGTATGGTCGTTTTATTTTTTATTGGTGGCACATTGGTAATGTTTTGATACTAAAATGTACTAATGTTTCTCTTCCGCGTATTCGAGAAAAATGAAGAAGAGAGGAGAGCAGAAAGAGATTGGATGAAGATGATAAGTGGCCGTGTAAGGGCAAGAATAGGATTTTGCCAAGAAAAAAAAAACCTGACCACTAACAATGCGTCGTCCTACCAGAGTAATAAATGGACTAGGGCAAGAAAGGGTTATTAAATATGGGTCGGTGGAAAATAAGTGAACATCAAATTTTAGATGGTAAATAGGGGATTTAAGTAACACTCAATGGTACATAAGGAATTTTCTCAGTAAAAAAGGGAAGTTTACTAAATAGATATTATTACTGTTATATTTGATTTGTTTAATAACAAACATAACCATATTCTCAATTTAGGTATTAGAGCATTTTAAGCAATTTAACTGCACAATCATGTGGTATCTATGACTTGTTTTTACTATTTTACTATTTATTCTTTAGGAGTAGTTCACCTTTTTTTGTTACATTGATGATTCAGGTGGCCCCTAACACTAGATCATTTTCTCTAGATAAATCAAAATCACAGGGTGGATTGGACTCTAGGAAGGATGCATTCATCCCAAGGGATGCGAATGGTCAACCTATTGCTGCACACACTTTCACTTTTCGTGAACTTGCTGCTGCCACTAAGAACTTCAGACAAGATTGTCTATTGGGGGAGGGAGGTTTTGGCCGCGTATATAAAGGACACTTGGAGAATGGGCAGGTTTGTGTTCTGAAATATGTTTTTCGTGGTTGGGGATTTTTTGAATTCTCTATGGTTAGCTACTGTGCACTTTTGGTAATTTGCGTACTAAAACACCACATTATGGTTACTGCATTTCTTTTAACCCCCTATGTGATCTGTGGAGCATTAGAGGAGACATGTTTCCTTAAAGTCTTGATCGATGAGCTTACCAAATATGCAGGCTGTTGCAGTGAAGCAACTTGATCGCAATGGACTTCAAGGAAATAGAGAGTTTCTGGTTGAAGTCCTTATGCTCAGTCTATTGCACCATGATAACCTGGTTAACCTAATTGGATACTGTGCTGATGGGGATCAACGTCTCCTTGTATATGAGTTTATGCCATTGGGATCACTTGAGGATCATTTGCATGGTAAATTTGCTACTCTACTACACTCATGAACTCCTATTGTATTTGTATGCCTATGTCCTGTATATTCAAAGACACATGTGGCATTATACATGCAGTATCTGTCAACTCAGCTTGCAAGTACCTACATGTGTTTATTCTATCGTTGTGAGCTCGTTATAACTCACACTTCCAACAGTATAAAGTTTCTTCCAGAAAAAGGAAAAAAAACAACAGTTTTGTGGGTTATCCTGTATTAACTCACAATTAATAAATACTAGTTAAAATAATTTGCGTCGTGAAAGTGGTTTACCAAACAGAAACCTTACATTGTTGTTACTTCAACTTTATTGTCTCCCACATATCCTGTCTCAAGTTTATATATCTAGAATACCCTATGATGTAATTATGCTCAGATACTTGTTCCATTGCTAAATCATGAAAACAAAACATTGTGTCTATAATCTGGACTTGATTTACTTAGCATTATGGTTTTTCGAAACCAACAGACTCTTATGTTTCCATAAAAGTTGGTAATATGCAACAACGATGTCTGCATCAGACTCTTAAGCGCATTGTTTGTTCATAAGACGTATTTAGTTTGTTTAAATTAATTTGCATGATTCATAAATGGCAACGTTTTGTACTTTTGTGTGTTAGATATTCCACCTGACAAGGAACCTCTCGACTGGAATACACGGATGAAGATTGCTGCTGGTGCAGCCAAGGGCTTGGAATTCTTGCATGACAAGGCAAATCCTCCTGTTATTTACAGGGATTTCAAGTCATCGAACATTCTTCTTGGTGAGGGATACCATCCAAAACTATCAGACTTTGGCCTGGCAAAACTTGGCCCTGTTGGTGACAAAACTCATGTTTCGACACGTGTTATGGGAACTTATGGCTACTGTGCCCCAGAATATGCGATGACTGGGCAGCTTACTGTTAAATCTGATGTGTATAGTTTTGGTGTTGTGTTCCTTGAACTGATTACTGGCCGCAAAGCAATCGACAACACCAAACCACTTGGAGAGCAGAACCTAGTGGCATGGGTATGTTCATCTATTGTCTAAATTTTGTCATAAGCTTGATGGTTGCCTATCGATATATCGTAGCAAATTCATTTATTTTACAATTTCTTGGATGAAGCATAGGTACTAAAACATTGTAGTTAAGGAAAAAATGAACTAAAAGATTTAAAAGTATAACTAGGATGGGAGTAAACTGTTTTTCCTAGCTTGGAAAATGAAATAATCCACTAGCCAAAAAGCTAATGTCTCAAAAGACATTTTTGGAAATTGTGCAAGGTTAGTCTTTTATTTACTTCTCAGATCATATAACCTTTTCTAACTGAACCTTGAGACTAACATTTATATCAAATGCCTCATTTGTTAATTCATATGGCATTTCCCTCGTATTTTCTGGAACGCAATCTTCGAAAGCCTTACACTGTAGCACATATAACATGCAATCTTCGAAAACTATTTCTATTCAGCTATTGTTATTGCTTATTCATCCAGAAACAGTAACTTTTCATTAGGCAGTTTGACCAGGGTCAGCCCTTCTTGGCCTTGGATTTATTGTCAGTTCCAAACCAATTTTGATTTTTTAAGAATGATTTTACATTTTTTTTTACTTTTCTTATTAGCAATCATGAAAGGAGAAAGCAATTAGAGCGATGAAGAAAACCCCTAAAATTGATCATGAAGTCAAAAGTTTAAATTAAATTCAGCTTAGAATTATGATCTGGAGCTGAGGAGCTCAGCCAAGCGGGTAAACCAGCTGGTAAAGTTTGTTGATTTGACTTTATAATCTAAACCAGCTGAGCATACTTGTATAATTGTCAAGTTTACCTCAATATCGGATTCCACCTTGGTTCTGAAATCCTCTTATAATACAAGAACGGTGTCTCTTATCAAGTGAGCGTAAAGTAGTTTTTTTTTGGGGGGGAAAGTAATTATTTTATTTTGATTGTTAACACCAGTGGAATTAGGTTATTTATTATTGACCATTGACACTAGTTCTTGTGATATCTTGATCACTCCTTTATCTATACTAATTTATTACCTGACAATATATTTTCTTGCAGTTGCAGATTTAAATAAGCTTTACTTTCGATAAATATTCAGATAACACAATTTTGGATATCTGATACCATTGATCTTATTTGCAGGCCCGTCCCCTGTTTAAAGACCGCAGGAAATTTCCTAAAATGGCTGATCCATTACTTGCGGGCCGATTTCCTATGCGGGGCCTGTATCAGGCTTTAGCAGTTGCTGCAATGTGTTTGCAGGAGCAAGCTGCCACTAGGCCTTTTATAGGAGATGTGGTCACTGCTCTTTCATATCTTGCTTCCCAGACATATGATCCAAATACACCTGTTCAGCACAGTCGGAGCAATGCATCTACCCCTAGGGCCAGAAACCGTGTTGGTGCGAATTTTGACCAGCGTCGTCTTCACTCACCAAATCACCAACAATCTCCAGATTTAAGGAAAGAAGGCACCACAACATCAAAATATGAAGCTGAGGTTAGCAGGACTAATTCTGGCAGTGGCTCTGGTCGACGAGCTGGCTTGGACAGCATGGATGTGACAGGTTCACAGATGGGTAGTCCTGCTCACGCAGGAAGGAAGAGGGAATCATCGCGGAGTACTGATAGGCAGCGTGCAGTCGCAGAGGCCAAAACATGGGGGGAGAATTCAAGAGAAAGAAAGTGGCCAAATGCTCGTGGCAGCTTTGATAGTACAAATGAGTAAACCTCTGAAGCAGAAGGTTCAGTTAAGTCGTCATTCTAGGGGAAAAAAAAAGATGAATCACTTGCAGAACCCAACTGGGTCGAATTAGGTACATGGGGCATTTTCGCTCCATCTCGGCTCTGCGGTCTATGTGAATAGAGCTTCTCTTTTTCTTTTTTCTGTCCTGGAGACACCACCGCTGCTTCAGAGCTCTCCTCTCGTCCATACGAATAGCATCACCGCGATCTCATCGTCGACGCGCCTATTCCTGGCGTCCATTCCTCGTGATTGATCATGCAAATGTGCCTTTTATTCATCATGAAGACAGAAACACCGTTTGGCTGGAAATGTAGGTAGAAAGCAAAAGAGAAAATTTGCTCTGGAGCTATCCATTGGGTATCTCATGTCGATGTTGTTGCATGATGAGTGTCAGCGGCTGCACCATTGTTCCTGAGTGTTCTAGCTCTATGTGAAGTGAAGTCTGCGTACCGAGGGATGTGATGTTCTTTTTTCTTTTCTTTTCTTTTCTTTTTGTCTCAATGGTTTGTACCTAGGGGGTACGGCATTTTACCTGTGTTTCATACACCTGTCATTTGACAATTTCATGTCGGAGTTATCTGTTGTTTTATCTCTACGAGTAAGCTGTTCTT
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| CDS seq | ATGGGCTGCTTTCCGTGCTTCGGGTCGGGCGGCAAGGGGGAGGCGAAGAAGGGCGGCGGCGGGCGCAAGGACGGCGGCTCGGCGGATCGCCGCGTCGCCCGGGTCGGATCAGATAAATCAAAATCACAGGGTGGATTGGACTCTAGGAAGGATGCATTCATCCCAAGGGATGCGAATGGTCAACCTATTGCTGCACACACTTTCACTTTTCGTGAACTTGCTGCTGCCACTAAGAACTTCAGACAAGATTGTCTATTGGGGGAGGGAGGTTTTGGCCGCGTATATAAAGGACACTTGGAGAATGGGCAGGCTGTTGCAGTGAAGCAACTTGATCGCAATGGACTTCAAGGAAATAGAGAGTTTCTGGTTGAAGTCCTTATGCTCAGTCTATTGCACCATGATAACCTGGTTAACCTAATTGGATACTGTGCTGATGGGGATCAACGTCTCCTTGTATATGAGTTTATGCCATTGGGATCACTTGAGGATCATTTGCATGATATTCCACCTGACAAGGAACCTCTCGACTGGAATACACGGATGAAGATTGCTGCTGGTGCAGCCAAGGGCTTGGAATTCTTGCATGACAAGGCAAATCCTCCTGTTATTTACAGGGATTTCAAGTCATCGAACATTCTTCTTGGTGAGGGATACCATCCAAAACTATCAGACTTTGGCCTGGCAAAACTTGGCCCTGTTGGTGACAAAACTCATGTTTCGACACGTGTTATGGGAACTTATGGCTACTGTGCCCCAGAATATGCGATGACTGGGCAGCTTACTGTTAAATCTGATGTGTATAGTTTTGGTGTTGTGTTCCTTGAACTGATTACTGGCCGCAAAGCAATCGACAACACCAAACCACTTGGAGAGCAGAACCTAGTGGCATGGGCCCGTCCCCTGTTTAAAGACCGCAGGAAATTTCCTAAAATGGCTGATCCATTACTTGCGGGCCGATTTCCTATGCGGGGCCTGTATCAGGCTTTAGCAGTTGCTGCAATGTGTTTGCAGGAGCAAGCTGCCACTAGGCCTTTTATAGGAGATGTGGTCACTGCTCTTTCATATCTTGCTTCCCAGACATATGATCCAAATACACCTGTTCAGCACAGTCGGAGCAATGCATCTACCCCTAGGGCCAGAAACCGTGTTGGTGCGAATTTTGACCAGCGTCGTCTTCACTCACCAAATCACCAACAATCTCCAGATTTAAGGAAAGAAGGCACCACAACATCAAAATATGAAGCTGAGGTTAGCAGGACTAATTCTGGCAGTGGCTCTGGTCGACGAGCTGGCTTGGACAGCATGGATGTGACAGGTTCACAGATGGGTAGTCCTGCTCACGCAGGAAGGAAGAGGGAATCATCGCGGAGTACTGATAGGCAGCGTGCAGTCGCAGAGGCCAAAACATGGGGGGAGAATTCAAGAGAAAGAAAGTGGCCAAATGCTCGTGGCAGCTTTGATAGTACAAATGAGTAA
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| Protein seq | MGCFPCFGSGGKGEAKKGGGGRKDGGSADRRVARVGSDKSKSQGGLDSRKDAFIPRDANGQPIAAHTFTFRELAAATKNFRQDCLLGEGGFGRVYKGHLENGQAVAVKQLDRNGLQGNREFLVEVLMLSLLHHDNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDIPPDKEPLDWNTRMKIAAGAAKGLEFLHDKANPPVIYRDFKSSNILLGEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDNTKPLGEQNLVAWARPLFKDRRKFPKMADPLLAGRFPMRGLYQALAVAAMCLQEQAATRPFIGDVVTALSYLASQTYDPNTPVQHSRSNASTPRARNRVGANFDQRRLHSPNHQQSPDLRKEGTTTSKYEAEVSRTNSGSGSGRRAGLDSMDVTGSQMGSPAHAGRKRESSRSTDRQRAVAEAKTWGENSRERKWPNARGSFDSTNE |
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| Function | Receptor-like cytoplasmic kinase 185 [UniProtKB/Swiss-Prot:Q6I5Q6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0372100 | OsNip_05t0372100-01 | Chr05 | 17922839 | 17930228 | + | RAP2018-11-26 | ||
| CDS seq | ATGGGCTGCTTTCCGTGCTTCGGGTCGGGCGGCAAGGGGGAGGCGAAGAAGGGCGGCGGCGGGCGCAAGGACGGCGGCTCGGCGGATCGCCGCGTCGCCCGGGTCGGATCAGATAAATCAAAATCACAGGGTGGATTGGACTCTAGGAAGGATGCATTCATCCCAAGGGATGCGAATGGTCAACCTATTGCTGCACACACTTTCACTTTTCGTGAACTTGCTGCTGCCACTAAGAACTTCAGACAAGATTGTCTATTGGGGGAGGGAGGTTTTGGCCGCGTATATAAAGGACACTTGGAGAATGGGCAGGCTGTTGCAGTGAAGCAACTTGATCGCAATGGACTTCAAGGAAATAGAGAGTTTCTGGTTGAAGTCCTTATGCTCAGTCTATTGCACCATGATAACCTGGTTAACCTAATTGGATACTGTGCTGATGGGGATCAACGTCTCCTTGTATATGAGTTTATGCCATTGGGATCACTTGAGGATCATTTGCATGATATTCCACCTGACAAGGAACCTCTCGACTGGAATACACGGATGAAGATTGCTGCTGGTGCAGCCAAGGGCTTGGAATTCTTGCATGACAAGGCAAATCCTCCTGTTATTTACAGGGATTTCAAGTCATCGAACATTCTTCTTGGTGAGGGATACCATCCAAAACTATCAGACTTTGGCCTGGCAAAACTTGGCCCTGTTGGTGACAAAACTCATGTTTCGACACGTGTTATGGGAACTTATGGCTACTGTGCCCCAGAATATGCGATGACTGGGCAGCTTACTGTTAAATCTGATGTGTATAGTTTTGGTGTTGTGTTCCTTGAACTGATTACTGGCCGCAAAGCAATCGACAACACCAAACCACTTGGAGAGCAGAACCTAGTGGCATGGGCCCGTCCCCTGTTTAAAGACCGCAGGAAATTTCCTAAAATGGCTGATCCATTACTTGCGGGCCGATTTCCTATGCGGGGCCTGTATCAGGCTTTAGCAGTTGCTGCAATGTGTTTGCAGGAGCAAGCTGCCACTAGGCCTTTTATAGGAGATGTGGTCACTGCTCTTTCATATCTTGCTTCCCAGACATATGATCCAAATACACCTGTTCAGCACAGTCGGAGCAATGCATCTACCCCTAGGGCCAGAAACCGTGTTGGTGCGAATTTTGACCAGCGTCGTCTTCACTCACCAAATCACCAACAATCTCCAGATTTAAGGAAAGAAGGCACCACAACATCAAAATATGAAGCTGAGGTTAGCAGGACTAATTCTGGCAGTGGCTCTGGTCGACGAGCTGGCTTGGACAGCATGGATGTGACAGGTTCACAGATGGGTAGTCCTGCTCACGCAGGAAGGAAGAGGGAATCATCGCGGAGTACTGATAGGCAGCGTGCAGTCGCAGAGGCCAAAACATGGGGGGAGAATTCAAGAGAAAGAAAGTGGCCAAATGCTCGTGGCAGCTTTGATAGTACAAATGAGTAA
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| Protein seq | MGCFPCFGSGGKGEAKKGGGGRKDGGSADRRVARVGSDKSKSQGGLDSRKDAFIPRDANGQPIAAHTFTFRELAAATKNFRQDCLLGEGGFGRVYKGHLENGQAVAVKQLDRNGLQGNREFLVEVLMLSLLHHDNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDIPPDKEPLDWNTRMKIAAGAAKGLEFLHDKANPPVIYRDFKSSNILLGEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDNTKPLGEQNLVAWARPLFKDRRKFPKMADPLLAGRFPMRGLYQALAVAAMCLQEQAATRPFIGDVVTALSYLASQTYDPNTPVQHSRSNASTPRARNRVGANFDQRRLHSPNHQQSPDLRKEGTTTSKYEAEVSRTNSGSGSGRRAGLDSMDVTGSQMGSPAHAGRKRESSRSTDRQRAVAEAKTWGENSRERKWPNARGSFDSTNE
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0372100 | OsNip_05t0372100-02 | Chr05 | 17922844 | 17930282 | + | RAP2018-11-26 | ||
| CDS seq | ATGGGCTGCTTTCCGTGCTTCGGGTCGGGCGGCAAGGGGGAGGCGAAGAAGGGCGGCGGCGGGCGCAAGGACGGCGGCTCGGCGGATCGCCGCGTCGCCCGGGTCGGATCAGATAAATCAAAATCACAGGGTGGATTGGACTCTAGGAAGGATGCATTCATCCCAAGGGATGCGAATGGTCAACCTATTGCTGCACACACTTTCACTTTTCGTGAACTTGCTGCTGCCACTAAGAACTTCAGACAAGATTGTCTATTGGGGGAGGGAGGTTTTGGCCGCGTATATAAAGGACACTTGGAGAATGGGCAGGCTGTTGCAGTGAAGCAACTTGATCGCAATGGACTTCAAGGAAATAGAGAGTTTCTGGTTGAAGTCCTTATGCTCAGTCTATTGCACCATGATAACCTGGTTAACCTAATTGGATACTGTGCTGATGGGGATCAACGTCTCCTTGTATATGAGTTTATGCCATTGGGATCACTTGAGGATCATTTGCATGATATTCCACCTGACAAGGAACCTCTCGACTGGAATACACGGATGAAGATTGCTGCTGGTGCAGCCAAGGGCTTGGAATTCTTGCATGACAAGGCAAATCCTCCTGTTATTTACAGGGATTTCAAGTCATCGAACATTCTTCTTGAATATGCGATGACTGGGCAGCTTACTGTTAAATCTGATGTGTATAGTTTTGGTGTTGTGTTCCTTGAACTGATTACTGGCCGCAAAGCAATCGACAACACCAAACCACTTGGAGAGCAGAACCTAGTGGCATGGGCCCGTCCCCTGTTTAAAGACCGCAGGAAATTTCCTAAAATGGCTGATCCATTACTTGCGGGCCGATTTCCTATGCGGGGCCTGTATCAGGCTTTAGCAGTTGCTGCAATGTGTTTGCAGGAGCAAGCTGCCACTAGGCCTTTTATAGGAGATGTGGTCACTGCTCTTTCATATCTTGCTTCCCAGACATATGATCCAAATACACCTGTTCAGCACAGTCGGAGCAATGCATCTACCCCTAGGGCCAGAAACCGTGTTGGTGCGAATTTTGACCAGCGTCGTCTTCACTCACCAAATCACCAACAATCTCCAGATTTAAGGAAAGAAGGCACCACAACATCAAAATATGAAGCTGAGGTTAGCAGGACTAATTCTGGCAGTGGCTCTGGTCGACGAGCTGGCTTGGACAGCATGGATGTGACAGGTTCACAGATGGGTAGTCCTGCTCACGCAGGAAGGAAGAGGGAATCATCGCGGAGTACTGATAGGCAGCGTGCAGTCGCAGAGGCCAAAACATGGGGGGAGAATTCAAGAGAAAGAAAGTGGCCAAATGCTCGTGGCAGCTTTGATAGTACAAATGAGTAA
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| Protein seq | MGCFPCFGSGGKGEAKKGGGGRKDGGSADRRVARVGSDKSKSQGGLDSRKDAFIPRDANGQPIAAHTFTFRELAAATKNFRQDCLLGEGGFGRVYKGHLENGQAVAVKQLDRNGLQGNREFLVEVLMLSLLHHDNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDIPPDKEPLDWNTRMKIAAGAAKGLEFLHDKANPPVIYRDFKSSNILLEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDNTKPLGEQNLVAWARPLFKDRRKFPKMADPLLAGRFPMRGLYQALAVAAMCLQEQAATRPFIGDVVTALSYLASQTYDPNTPVQHSRSNASTPRARNRVGANFDQRRLHSPNHQQSPDLRKEGTTTSKYEAEVSRTNSGSGSGRRAGLDSMDVTGSQMGSPAHAGRKRESSRSTDRQRAVAEAKTWGENSRERKWPNARGSFDSTNE
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0372100 | OsNip_05t0372100-03 | Chr05 | 17922861 | 17923936 | + | RAP2018-11-26 | ||
| CDS seq | GACTTTTGCCCTCCCTTGGGCATCCATCTCCTCTCCCTCCCTCCCCTCCCCTCCCATCCCTACCCCCAAAATCGCCGACCGACCGCCCCCAAATCCCATCCAAGAGCCGTCGCCTCCTCCAAAGATCGGATTTCGAGACCCCCCAGATCGGGGGGAGAGATCCCCGTGTCGTCTGGTGTGGTGGGTCGGCCTCCGCCCCCCGGCCGCCGCGCTTCTCTTGATCTTTCTTTCTTTTTTTTGATTTTTTTGCGTTTCCCCTCCGGGAGAGGGGAGGGGAGGAGGGTTCTTGGATGGGCTGCTTTCCGTGCTTCGGGTCGGGCGGCAAGGGGGAGGCGAAGAAGGGCGGCGGCGGGCGCAAGGACGGCGGCTCGGCGGATCGCCGCGTCGCCCGGGTCGGATCAGGTGCGGTTCTTGTGGTGGGGGTGTGGGGGGAAAGGGTTGGATCTTGGGGGTGGTTTTGTTTGTAGGAAATGGTAG
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| Protein seq | DFCPPLGIHLLSLPPLPSHPYPQNRRPTAPKSHPRAVASSKDRISRPPRSGGEIPVSSGVVGRPPPPGRRASLDLSFFFLIFLRFPSGRGEGRRVLGWAAFRASGRAARGRRRRAAAGARTAARRIAASPGSDQVRFLWWGCGGKGLDLGGGFVCRKW |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0372100 | OsNip_05t0372100-04 | Chr05 | 17922988 | 17930258 | + | RAP2018-11-26 | ||
| CDS seq | ATGGGCTGCTTTCCGTGCTTCGGGTCGGGCGGCAAGGGGGAGGCGAAGAAGGGCGGCGGCGGGCGCAAGGACGGCGGCTCGGCGGATCGCCGCGTCGCCCGGGTCGGATCAGATAAATCAAAATCACAGGGTGGATTGGACTCTAGGAAGGATGCATTCATCCCAAGGGATGCGAATGGTCAACCTATTGCTGCACACACTTTCACTTTTCGTGAACTTGCTGCTGCCACTAAGAACTTCAGACAAGATTGTCTATTGGGGGAGGGAGGTTTTGGCCGCGTATATAAAGGACACTTGGAGAATGGGCAGGCTGTTGCAGTGAAGCAACTTGATCGCAATGGACTTCAAGGAAATAGAGAGTTTCTGGTTGAAGTCCTTATGCTCAGTCTATTGCACCATGATAACCTGGTTAACCTAATTGGATACTGTGCTGATGGGGATCAACGTCTCCTTGTATATGAGTTTATGCCATTGGGATCACTTGAGGATCATTTGCATGATATTCCACCTGACAAGGAACCTCTCGACTGGAATACACGGATGAAGATTGCTGCTGGTGCAGCCAAGGGCTTGGAATTCTTGCATGACAAGGCAAATCCTCCTGTTATTTACAGGGATTTCAAGTCATCGAACATTCTTCTTGGTGAGGGATACCATCCAAAACTATCAGACTTTGGCCTGGCAAAACTTGGCCCTGTTGGTGACAAAACTCATGTTTCGACACGTGTTATGGGAACTTATGGCTACTGTGCCCCAGAATATGCGATGACTGGGCAGCTTACTGTTAAATCTGATGTGTATAGTTTTGGTGTTGTGTTCCTTGAACTGATTACTGGCCGCAAAGCAATCGACAACACCAAACCACTTGGAGAGCAGAACCTAGTGGCATGGGCCCGTCCCCTGTTTAAAGACCGCAGGAAATTTCCTAAAATGGCTGATCCATTACTTGCGGGCCGATTTCCTATGCGGGGCCTGTATCAGGCTTTAGCAGTTGCTGCAATGTGTTTGCAGGAGCAAGCTGCCACTAGGCCTTTTATAGGAGATGTGGTCACTGCTCTTTCATATCTTGCTTCCCAGACATATGATCCAAATACACCTGTTCAGCACAGTCGGAGCAATGCATCTACCCCTAGGGCCAGAAACCGTGTTGGTGCGAATTTTGACCAGCGTCGTCTTCACTCACCAAATCACCAACAATCTCCAGATTTAAGGAAAGAAGGCACCACAACATCAAAATATGAAGCTGAGGTTAGCAGGACTAATTCTGGCAGTGGCTCTGGTCGACGAGCTGGCTTGGACAGCATGGATGTGACAGGTTCACAGATGGGTAGTCCTGCTCACGCAGGAAGGAAGAGGGAATCATCGCGGAGTACTGATAGGCAGCGTGCAGTCGCAGAGGCCAAAACATGGGGGGAGAATTCAAGAGAAAGAAAGTGGCCAAATGCTCGTGGCAGCTTTGATAGTACAAATGAGTAA
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| Protein seq | MGCFPCFGSGGKGEAKKGGGGRKDGGSADRRVARVGSDKSKSQGGLDSRKDAFIPRDANGQPIAAHTFTFRELAAATKNFRQDCLLGEGGFGRVYKGHLENGQAVAVKQLDRNGLQGNREFLVEVLMLSLLHHDNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDIPPDKEPLDWNTRMKIAAGAAKGLEFLHDKANPPVIYRDFKSSNILLGEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDNTKPLGEQNLVAWARPLFKDRRKFPKMADPLLAGRFPMRGLYQALAVAAMCLQEQAATRPFIGDVVTALSYLASQTYDPNTPVQHSRSNASTPRARNRVGANFDQRRLHSPNHQQSPDLRKEGTTTSKYEAEVSRTNSGSGSGRRAGLDSMDVTGSQMGSPAHAGRKRESSRSTDRQRAVAEAKTWGENSRERKWPNARGSFDSTNE
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0372100 | OsNip_05t0372100-05 | Chr05 | 17926405 | 17930264 | + | RAP2018-11-26 | ||
| CDS seq | ATTGCTGCACACACTTTCACTTTTCGTGAACTTGCTGCTGCCACTAAGAACTTCAGACAAGATTGTCTATTGGGGGAGGGAGGTTTTGGCCGCGTATATAAAGGACACTTGGAGAATGGGCAGGCTGTTGCAGTGAAGCAACTTGATCGCAATGGACTTCAAGGAAATAGAGAGTTTCTGGTTGAAGTCCTTATGCTCAGTCTATTGCACCATGATAACCTGGTTAACCTAATTGGATACTGTGCTGATGGGGATCAACGTCTCCTTGTATATGAGTTTATGCCATTGGGATCACTTGAGGATCATTTGCATGATATTCCACCTGACAAGGAACCTCTCGACTGGAATACACGGATGAAGATTGCTGCTGGTGCAGCCAAGGGCTTGGAATTCTTGCATGACAAGGCAAATCCTCCTGTTATTTACAGGGATTTCAAGTCATCGAACATTCTTCTTGGTGAGGGATACCATCCAAAACTATCAGACTTTGGCCTGGCAAAACTTGGCCCTGTTGGTGACAAAACTCATGTTTCGACACGTGTTATGGGAACTTATGGCTACTGTGCCCCAGAATATGCGATGACTGGGCAGCTTACTGTTAAATCTGATGTGTATAGTTTTGGTGTTGTGTTCCTTGAACTGATTACTGGCCGCAAAGCAATCGACAACACCAAACCACTTGGAGAGCAGAACCTAGTGGCATGGGCCCGTCCCCTGTTTAAAGACCGCAGGAAATTTCCTAAAATGGCTGATCCATTACTTGCGGGCCGATTTCCTATGCGGGGCCTGTATCAGGCTTTAGCAGTTGCTGCAATGTGTTTGCAGGAGCAAGCTGCCACTAGGCCTTTTATAGGAGATGTGGTCACTGCTCTTTCATATCTTGCTTCCCAGACATATGATCCAAATACACCTGTTCAGCACAGTCGGAGCAATGCATCTACCCCTAGGGCCAGAAACCGTGTTGGTGCGAATTTTGACCAGCGTCGTCTTCACTCACCAAATCACCAACAATCTCCAGATTTAAGGAAAGAAGGCACCACAACATCAAAATATGAAGCTGAGGTTAGCAGGACTAATTCTGGCAGTGGCTCTGGTCGACGAGCTGGCTTGGACAGCATGGATGTGACAGGTTCACAGATGGGTAGTCCTGCTCACGCAGGAAGGAAGAGGGAATCATCGCGGAGTACTGATAGGCAGCGTGCAGTCGCAGAGGCCAAAACATGGGGGGAGAATTCAAGAGAAAGAAAGTGGCCAAATGCTCGTGGCAGCTTTGATAGTACAAATGAGTAA
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| Protein seq | IAAHTFTFRELAAATKNFRQDCLLGEGGFGRVYKGHLENGQAVAVKQLDRNGLQGNREFLVEVLMLSLLHHDNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDIPPDKEPLDWNTRMKIAAGAAKGLEFLHDKANPPVIYRDFKSSNILLGEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDNTKPLGEQNLVAWARPLFKDRRKFPKMADPLLAGRFPMRGLYQALAVAAMCLQEQAATRPFIGDVVTALSYLASQTYDPNTPVQHSRSNASTPRARNRVGANFDQRRLHSPNHQQSPDLRKEGTTTSKYEAEVSRTNSGSGSGRRAGLDSMDVTGSQMGSPAHAGRKRESSRSTDRQRAVAEAKTWGENSRERKWPNARGSFDSTNE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr05 | 17927556 | 17927947 | + | OsNip_05t0372100-01,OsNip_05t0372100-04,OsNip_05t0372100-05 | OsNip_05t0372100-02,OsNip_05t0372100-01,OsNip_05t0372100-05,OsNip_05t0372100-04 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.893934 | 4.564429 | 11.736587 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0936100 | RBH | 2.704475 | 3.402472 | 8.518624 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g30870 | RBH | 2.214684 | 2.298770 | 2.199581 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0372100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0014650 | RBH | 1.064969 | 29.488531 | 14.913982 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0014650 | RBH | 0.555437 | 6.045520 | 4.107768 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0014500 | RBH | 1.553399 | 11.809311 | 20.839886 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0014520 | RBH | 0.303942 | 0.557089 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0014680 | RBH | 10.183140 | 28.962442 | 32.286983 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0274300 | RBH | 11.4612945 | 25.314035 | 42.091833 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0014320 | RBH | 0.434454 | 1.743325 | 3.955687 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0285200 | RBH | 13.8713185 | 27.7553845 | 31.397349 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0014470 | RBH | 0.468396 | 0.496123 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0014520 | RBH | 0.602748 | 25.772947 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0014530 | RBH | 4.342228 | 37.881824 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0014590 | RBH | 0.783088 | 2.093317 | 2.603137 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0014620 | RBH | 0.669143 | 13.904347 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G014220 | RBH | 1.302770 | 6.915554 | 4.771400 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0014480 | RBH | 2.467585 | 21.977274 | 15.970410 |
