Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_05g0345900 | OGI:05043290 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr05:16284753-16285671 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATTGGGCCACGTAATCCTTAATAGCATCCAGTGGCCTACCTTTCAACATGGCAGCTATGCTTTCATGAGTGGCAAGATATGTCTGCAAATGAAGTCGAACTATAGTAGGGTATTCTACCATTTCATCGATTATCTTGAATAGGGACTCATTTGGATGTGTCACATGTGTGAAGTGCATGGTGTCTGACATATTATTCATAGCACCGGTTATGTGAAGAATTGGATTATCATCAGCTTTAACTCTTTTACCTTTATCAATCTTGCTCCCTTTTGGACGCTTTGAAGATGAGCTACTTCTATTATTATTCTCCTCAGGAAGGTAGTCCGAGTCATAATGTAAAGAAGGATCAACATCACTAGGACTGCCATTTTTCTCACCAATAAAATCAGTATCTTCAGTCATTGGGTGGTCATATGGTGCTTGTAGATTAATAAACTTTCATGTTGCATGCTTGTCTTGAAAAATGAACTACATTTCATCATACCAACGTATGGGGACATTTATATATTTTGCCCTTTTATCTTTGGCCTACAGAAACCAAGAAATATATCACTACATAGAGAACAATATAGTAAAAAAAGATAGATATTTGCAAGATTAGTAGATACTCACATTATTCATTTGGACAACTTCCGTCTCATCATATAGGAATCTTTTTTCAACATCATCAAAGTTGGCCCCACTTAAATTCTTCGCTTCCATTATCACCTTCCATTGAGCCTTCAACTTGTGGAATTTGTGATAAACTTGACGGCTTGTGAATTTTGTGTGATACTTTTCATTAATTTGCTTTGCACACTCCTCGTAATGCACTTCCTTAAAAATAAATTGTCTACCTTCAGCTTGTATCTTCTCCTTGTAGTATCGCAACATTTCCTCGACAACTTGGGGCTGCCAAACCATATTGTTGCCAGCCAT
More
|
||||||||||
| CDS seq | ATGGCTGGCAACAATATGGTTTGGCAGCCCCAAGTTGTCGAGGAAATGTTGCGATACTACAAGGAGAAGATACAAGCTGAAGGTAGACAATTTATTTTTAAGGAAGTGCATTACGAGGAGTGTGCAAAGCAAATTAATGAAAAGTATCACACAAAATTCACAAGCCGTCAAGTTTATCACAAATTCCACAAGTTGAAGGCTCAATGGAAGGTGATAATGGAAGCGAAGAATTTAAGTGGGGCCAACTTTGATGATGTTGAAAAAAGATTCCTATATGATGAGACGGAAGTTGTCCAAATGAATAATGTGAATAAAAGGGCAAAATATATAAATGTCCCCATACGTTGGTATGATGAAATGTAG |
||||||||||
| Protein seq | MAGNNMVWQPQVVEEMLRYYKEKIQAEGRQFIFKEVHYEECAKQINEKYHTKFTSRQVYHKFHKLKAQWKVIMEAKNLSGANFDDVEKRFLYDETEVVQMNNVNKRAKYINVPIRWYDEM |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0345900 | OsNip_05t0345900-00 | Chr05 | 16284753 | 16285671 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCTGGCAACAATATGGTTTGGCAGCCCCAAGTTGTCGAGGAAATGTTGCGATACTACAAGGAGAAGATACAAGCTGAAGGTAGACAATTTATTTTTAAGGAAGTGCATTACGAGGAGTGTGCAAAGCAAATTAATGAAAAGTATCACACAAAATTCACAAGCCGTCAAGTTTATCACAAATTCCACAAGTTGAAGGCTCAATGGAAGGTGATAATGGAAGCGAAGAATTTAAGTGGGGCCAACTTTGATGATGTTGAAAAAAGATTCCTATATGATGAGACGGAAGTTGTCCAAATGAATAATGTGAATAAAAGGGCAAAATATATAAATGTCCCCATACGTTGGTATGATGAAATGTAG
More
|
|||||||
| Protein seq | MAGNNMVWQPQVVEEMLRYYKEKIQAEGRQFIFKEVHYEECAKQINEKYHTKFTSRQVYHKFHKLKAQWKVIMEAKNLSGANFDDVEKRFLYDETEVVQMNNVNKRAKYINVPIRWYDEM |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0496700 | RBH | 0.000000 | 0.0 | 0.671978 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g27910 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0345900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0013020 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0013060 | RBH | 0.0 | 0.0 | 0.693129 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0012910 | RBH | 0.000000 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0012970 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0012980 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0244500 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0012620 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0253300 | RBH | 0 | 0.0091645 | 0.007117 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0012860 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0012790 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0012860 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0012900 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0012940 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G012590 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0012930 | RBH | 0.0 | 0.0 | 0.0 |
