Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_05g0285900 | OGI:05031940 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr05:12293923-12298522 | ||||||||
| Gene Symbol | OsSTA143, STA143 | ||||||||||
| DNA seq | CTCTCTCTCTCTATTTGCCGCAATCGACGCGCCTCCTCCGCATCGGCGCGACCGCGCATCCTCTCCCGCATCTCCCTCTCTTCCGCATTCGCCGTGCCTCCTCCGCATCCCTCCCCTCCGCGTCAGGATCGAGCGCCGCCTCGCGCAGGGGTTCACCGGCCTGCTGCAGGCGCAGCCGCCGCAGTTCCCGTGGCCGGCGGCGTCGCACAAGCGGATTCCCTTCGAGATCGACCTCCCCGTGGTCCCCTTCGGCGCCTCCCGGGGTGCCCGGGCCGGGAAGGAGTTCTTCCTCGCCGCGGCCGTCGCCTCCATCATCGACATCGGCAGGAGGCCACCGGCGCCAGGGAGGTGATTCTGCCACTCCGCGCCTCACCGGTCTCCACTCTCCATCTCGCCGCCGCCACCACGTCCGCCCTCTGCCGCAGATAGAGGTACACATCCCCTCACCCATCCCTAATATGTCAGCTCTCTTCCAAATAAGTCCCCCCGCCGGCTATATTTCAATTTTATTATGCTGCAAGTAATCCGCGTCGTCACATTCAATACTATGGTGATCATATAATTTGGAGTACATGTTTAGAAAAAAAAACTAATGCACTAAACACAATGATGATTTGAATGAATCAATTATTGCTGACGATCGCATCTGAATCAATGGTAGTTTACCCTTGAATGATTTGTCTCTGTTCTTCTATGTTTGGTGGTGGTGGTATTATATACATGTTTAGACAAAAAAACTAATGCAGTATAATTTGCATATGTTCTTCTGTTCGGTTACCGGAACTATCATAATACATTTATTCGTCACCATTTTCTGATGCTTGTTATATAAATATGAGCATCTCTTTCAGTGATATCCTCTAAATATGTTTCCTGTGACATCCTCTAAATTCACAATGGAAACGTGTTACTGATTCGAAGTCTCAATGCAGTGACATGTTTATTTGGACACATGTATAATTGGAGTACATGCATTTGTGATAAGTTTCCTTGGTAAATGCAATGTGTTCTTCATCATTGTCAATTATTCTAGGAGGCCTTGATATGTCAGTTACCGGATTCATGGCCATTGTTCCACACCCTAGGAATTATTTGAAGGGCAATATTTTTATGAAGCTTAAAGATTGAATTTGAATCCATCTGCCCTGGCTTGAAGGTGAACATGATTTTATTTTTAAGATTGCATTTTAGTTACTCTTAACATACTCCAGTTACTCAATCATATACATATCTGTTTCACACATGATCTATTTATGCACTTTTGTCGCGTTTAGTCTAAAACGATGCTGTCAAATTTTAAAAGGGCATTGCTTTACTAAATTGTGGTGTATGTAGTATTAGCATGTCAAATTACATTTATGCGTTTCTTGCTTCCCGACCATATGTCAAATAACTGAAAGTGTTAGTACTTGAGTTAACCCTTTTTTCATACTTATGCCATATAGCACCCTAATTTTGTTCATGCGATCAGAGGATAAAATATTAAGAGGATTCTTTAGTATGGCTCATTTTATTGTTTCTAAGTTTAGGGTTATTCAGACAGATAACACTTTAGCTTTCTATATAATATTGGTTTTACAACTTTGTCTCTCGAAGGTTTTTTTTTTTTGGAACGTATTGATGGTTTTCCTCATAATATGCTCTTGAAATCCATCTTGTCCCTGTTCAATGCAGTACAATCCAAATATTATGGTATATCAACAGCAGCTTCAGTCTGGGACAGAGCAATACAAGGTCCTCCCTGTAAGTTTAGTATGAACAGTGCAATCAAATTTATAAGTCTTCCCTATCAAAATTTCAGTATAGCCCCATTTGTGCTGGTCTGATTAATTATCTTTGAAATGATATTCTGCTTTGAGATTAAATTACATGTAACTAACTTGCTTTGATACCTTCACAAGTCGTGAAATGGTTTAGCTGTACTTCCATGTTTGGGTTACTTGTGTAATATTTGGTAGGCTATAAACCCATTTGTTGTGCCTTTTTTTTTATTATATTGCTCAATAAAGATAGTCAATCAATGTGTTGTAAATAATAAGGGAATTGGCTTGTATCATTTGTTTCTTCTATGCTCAAGATCCTGAACTGTTGTGCATGTATCATTTGTTGCCACTGAGTCATTATTTGGATTCATCAGAGAACATCCATCATTTTGATTACCAGACTATGGACTGATTTATGCCATGCTTGCTAATTGATAGAGGGACATTTGCTACTTCTGCATATAGGACAGATAATTAAACTTTTTGTGCGCTGAAATGCTCTTTGTACGGTGAGTATATGACACGCTAAAGATGACTGAAATTAAACTTAGGATACTTCTGTTTGCAACTATAAGACATGAGTTCTTTTGCTATATTTCTGGATAGGTGGAGTAGGTTTTATTTTTAAGAGTTTGGTCTGTGGATTTTCGTCTGCCGATGAGTCTCCAATGTTTGATACAGTGTAGCCCATGAGCAGCTGCTGTTTTCTGATTTTTTTTTTCAAGGTAATGTAGCTGCTTTGTGTATATGTGTTTGTCCAATAGTGCCTGCCATTCCCTTTGGATGGTTTGCATTGCAGATGAATTACGATTGCCATCTCATGTTGCTATGGCACTATGCTAAGTGAATCTTGTTCACTTCCTTTATTCAAGCACAAGGAATTTATGTATGTTCATTATGAAATCTGTAAGTTAGATAATGAACATACATAAATTCACTAGCTGTTGTGTTATCACATTGATTGTAACATCAAAACAATCAACTACTAGAAAATACTAAAGTTTCTAAATGGTTATCAGAACACACTGGAATTTTTTTATGGGCTTACTGTTCCACACTGCATTCCTTCACAATTGAAGTTTGCCATCTCTTATGGCACTCTTTTAGCTTGATAATCTGAAAAAATAGATGACTAAATCTATAGTTTCCTTTTATCCAGGAGGAGATTTGGCTTTTCAGTATGCTTCAGTAAGGATTTAGCAGATGGCAATCTTTGCTGGTATGTAGAGTATTTCATTAGGCTAATCGCCTATTTGTTGATGATCATAATTGGCACATAAATTGATAAATTTGTATTGATGATTCTACTCATTTTAAATGTTATATGGTAGCATCCTTTGTTTGATAAGGAAAAATCAGTGTTCTTTGCATATTCAATTAGAGAAGAGCATGAATACTGTTGTTACTCTAGGAAGAATGCTTATATTATGAAAGGAGCGCTAACATTGCGTTGAGAAAACAACAGGTGATGTTATCTTTTTCTGATTTCCTTATATTGCAGTCTGTTAGCAAGGAGCATCAAGAGTTCCTCGGCCTTGTCGACAAAGAGGTATAATGTGAACTTGTAAATTGATATTAGAGTGACAATTATTCATGCAGTTATCTTCCATTTTTATTGCAAATACTTGGGAGGGCTCAATAACTCTTGGTCTTTGTTGAATGCAGATTGAATTATATTATATACTAATGGAATTCCGCCGGCGGTGTGAGGCCCACTCAGAGTAGGATTTGGAGGGTGCAGAACTGTTTTTGCATTGCCAATGAAAGGAGGAAGACCGCCTCAAAGAGCCTTGTCCCCATCCACCAACATGGTCATGATAATCGTTGACATCGACCAAGATCTCTCCAGGGTAAGTAGAACAGCACTAAAATTAGGATTAGCATTTCTAGACACCATGTTATTTCAGAAATTGATTAGTTGGAATCTTGTATTCATTTTGCTAGCCTGAGTGCCTAACTTAGTGGAAATATATTGGAAAAGTTTCTCCATGGCAGATTGAGGCTGTTATTTCCTGTAGATTTAGGTTTCGCTGTAAATACTGAACAATTATTGCAATTTTCTATTTGTATTGAGTACTTGGGTGGTTCTTTCTATCAACCAAATCAATTTTTATTCATCAGTGTAGACTCTTTGAACTGCAATTGTTGTGCTGCTGATATGTGTTATGTAGGCTGCAGCAGAAGGTCAATTTTCCCTTTTGTGAGGTGCCATAATTTTGAAAATATGTTAATTTTGTCAATTGCTTGATATTAAGTGGAGTATCTCCTTTGTATGCACCAACCAATTTTGGAGCTCCAGACAATGAAACGATAGCTTCATAATATCCATGAAAAAGTGCTATTGGATGAATCCAGTAAAGATGTGTTTTCTCTGGCATTTTGAATATTGAAGTGTGCTGATGACTTTGTAATTACTAATAATGATGCAATGCATAAATTCTATGGCCGGTTCTGTTACTTCTTTTTATTTGGACGTAATTTGCTTGAAAGATTTTTGATGTGGCTAAAGGAGAAATTTTTTTAAGGCATTTGGTTTCTCAGGAGTTTAGGAGTTGGAACCATGCAAACATGCCTCATGCTAATGTCTTCCTGAGCTTTCAGAAATCGAAGTTATTTCTAGCTTAAGATGATGTTGGAGCTGATCCTGGTGCTGTTAGAGAGGCCAATCTATTCAGGTCCAGCAGTTTACATCAAGATGATGTTCTTTCTAGCGATGCATGTAGTGACCATTGATGTTTCGATTGCTTGAGGCGACCCTCTTTGTAATTGTGAAAAATGTGGTGTTATGAAACAAAAATATAGATTTACATCCAGGAGATAAAATTATTTTATTCTGT
More
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| CDS seq | ATGAAAGGAGGAAGACCGCCTCAAAGAGCCTTGTCCCCATCCACCAACATGGTCATGATAATCGTTGACATCGACCAAGATCTCTCCAGGGTAAGTAGAACAGCACTAAAATTAGGATTAGCATTTCTAGACACCATGTTATTTCAGAAATTGATTAGTTGGAATCTTGTATTCATTTTGCTAGCCTGA |
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| Protein seq | MKGGRPPQRALSPSTNMVMIIVDIDQDLSRVSRTALKLGLAFLDTMLFQKLISWNLVFILLA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0285900 | OsNip_05t0285900-01 | Chr05 | 12293923 | 12297781 | + | RAP2018-11-26 | ||
| CDS seq | ATGAAAGGAGGAAGACCGCCTCAAAGAGCCTTGTCCCCATCCACCAACATGGTCATGATAATCGTTGACATCGACCAAGATCTCTCCAGGGTAAGTAGAACAGCACTAAAATTAGGATTAGCATTTCTAGACACCATGTTATTTCAGAAATTGATTAGTTGGAATCTTGTATTCATTTTGCTAGCCTGA |
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| Protein seq | MKGGRPPQRALSPSTNMVMIIVDIDQDLSRVSRTALKLGLAFLDTMLFQKLISWNLVFILLA |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0285900 | OsNip_05t0285900-02 | Chr05 | 12293964 | 12298522 | + | RAP2018-11-26 | ||
| CDS seq | ATGAAAGGAGGAAGACCGCCTCAAAGAGCCTTGTCCCCATCCACCAACATGGTCATGATAATCGTTGACATCGACCAAGATCTCTCCAGGGTAAGTAGAACAGCACTAAAATTAGGATTAGCATTTCTAGACACCATGTTATTTCAGAAATTGATTAGTTGGAATCTTGTATTCATTTTGCTAGCCTGA |
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| Protein seq | MKGGRPPQRALSPSTNMVMIIVDIDQDLSRVSRTALKLGLAFLDTMLFQKLISWNLVFILLA |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0285900 | OsNip_05t0285900-03 | Chr05 | 12293965 | 12297785 | + | RAP2018-11-26 | ||
| CDS seq | ATGAAAGGAGGAAGACCGCCTCAAAGAGCCTTGTCCCCATCCACCAACATGGTCATGATAATCGTTGACATCGACCAAGATCTCTCCAGGGTAAGTAGAACAGCACTAAAATTAGGATTAGCATTTCTAGACACCATGTTATTTCAGAAATTGATTAGTTGGAATCTTGTATTCATTTTGCTAGCCTGA |
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| Protein seq | MKGGRPPQRALSPSTNMVMIIVDIDQDLSRVSRTALKLGLAFLDTMLFQKLISWNLVFILLA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.330497 | 0.453330 | 1.075944 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g20914 | RBH | 0.219926 | 0.300026 | 0.272540 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0285900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G009890 | RBH | 0.0 | 0.000000 | 0.369669 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0010210 | RBH | 0.505163 | 3.113931 | 8.618651 |
