Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_05g0250700 | OGI:05024630 | 8/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr05:9151522-9154993 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGAGCTGATCCCAATATTTGTCTCGAATCTATAGGGATCTCTCGTGTACAACACATGCCACCTCCGTTCATTGTCTCCTTGGTCAGCATAGGCCTTCACATGCTGGACACGGCTCAACTTGCTCCACTCAGGACCGGATTCTCCTGTTGATATGGCTGTGAGCATCTCCAAGCTGCAGTCTAGCACCAGATGCCTAGGACTCACACTCTGCAGCAGGTATCCTGGAAGCTCTTCCATATCTAAGTCCTTGAGCTCTAGCCTCAGCAGCTCAGGAACCCCCTCCAATATCCTCATCTTCAGGCAGCCGTCAATGACGAGCTTCTGTAACTTGTTGAGGGAAGTGATACTCTCCAGGTTGGGGTTATCATACACCTCAAGCTTGACAAGAGAAGCAAAGCTCTCCACAGAATTGAGTTGTTGGATGTTACGTAGGTACAAGCTTGTCAAGGCCGTTGCTTGTGAGGAAAGGCCAGGAGGAAGGCGTCTCAGCTTGCAGTTTTCGATCACAAGCTCCTCCAATGCAGGCATTGCATGCACACTATTTAGTTGTTGATCCCACTCCCACTCCTCCCACTCCACCATGCCTATCAGATTCATCCTCTTCAGCCTCGGGAAGGCATGAGCTTGGCGGAGTTGGCTCGATGATGGTAGTATAGTTAGGAATTCAGGGCCAACACGCTTGGTTGCAGGGGCATGGGTGAGCTGAAAGTAATACAGAGACGGAAGTCGGCAGAGGCCATCTGGGAGTTGGTTGCAGCAAGCGAGGTCATCCATGATCACCATCGACAACCTCTCATATGCACCTGCTACTCTTGACATCATCCACCTTGGTAGCTGCTCTCCAAAATGGCCACTAATCTCAATGCTCTCTATGCACAGTGGCGGGGTAAGCGCATTGAACACCTCCTCGATTTGCCGCTGCTCTTCCGTGGGGACACCATTCTCGTCTTGTACAAAACCATCTTCACCAAGTCTACTACTACATTCTAACATCAAGTAGCTAAGGTGGGCCTTCTCACCAAGCCTAGCCTTTGCAGCGAACGAGATAGCAGGTACATTCTCTAGGTTACTTAGTCCAAGAACCCAGAGCTGAGCAAGAGGCCCCAGCTCTTGCAAGCTACACTAATCACCATCTACTTGGGTTGGAAAACCATATAAAGTCCTCAAGCTTGTTAGGCCACAAAACCCTCGAGGTATACTAGTTATACTTGTGCCACTAAGGTCAAGATACCTCAATTGTCCTAGCTTTACAATGCTATTAGGAAGCCTGTCCAAATTCTCACATACAAGGCCAAGGTACTGCAAGAATCTCATCTTGCCAATGTTTTCTGGCAATCTAGTTATGTCACCACATTTTAGGGAGATGTACCTCAAGTGTTTGAGTTGATGCAATGATTCAACCAATGTGGAAGTACAGTTGGCATTTTCTATGTGTAGAGTCCTTAGGCTTGAAAGAGTAATCAATGAATCCCCTGGGTTAATCTTAAGCTCACCAACTAGTATTAGTGTTCTAAGTGATTTTTGCCCTTGTATAATTTTCCACCCAAATTCATCATTCGGTTGCAAATCATCTGTTTCTATAGACAACCTGAGAAATTTATGTGATTTAAGTGCACCCCTGCCTATTTCATCTCTAGATGAAATTACAAGTGCTTCATCTCTAGCCAGATGTTGAGCAAATGAGCGAACAACATCATGCATGGTGCTAACCCATTCTCCAGCGTACTCCGCATTTGGCTCTATTAAGTTTCTGTAAATTAACTCTTTATAGCACTCTTCTCCTAATTGTTCTAAATCATCAGTTTCCCCATGAAGAAATCCTTCACTTATCCACATGCTAGTAACTGTGTCAATGAAGAAATCCACATTTTTGGGGAGGAGGGAGTAGTGCAGAAAGCACTGCTTCAGACAAGGGTGCAAATCTTGATAGCTCAAGTATATAGTATAGTTTAGCTCATCAGGCATTTGAGGTACTGACCATATAGAATCATGCAAAATTTTCTCCCAATCTGCTCGCCGTCTCTCCTTTTGGCACAAGAGTCCCCCCATTACTTTGACAGCAAGAGGCAATCCACCACATTTGTCTATTATCTCCATTCCGATGTCCTTGAGCGTCTCATCAATCTCAACGTCCTCCATCTCACTTGAAACTACCTGAAAATTATTTCATATACATGCATGCATTTAGAACAATTAGTTTAGCAAATGGTACTCTATTCTAGTCTATATACATACAAGTTAATATGTTGGCAATGTCTTTTTGTTGTTAGATTATTTTTTTTCGGGGATTTTTGTTGTTAGAATTAATTATTATGGCCAAGAAGATAGGTGTCACAGTGTTTCTTATGGCAGAGATAGATGAGGGAGGGATGTAAAACATTTAGTATATTGTGTAAATCTGACCTGTTTCTTGAGCAGTGACCATGCATCTGGAGGGCACAGTTTGTCGACGTGGTGGAAGGGGTGCATGGCTTGCATACCCCGGGCGACGGCGTCATGGCGGGTGGTGACGAGGACACGACTGCCGGCGGCGCCATGGCTGAAGGGCACCTTGAGCAGGCCGCTCCATGCTCTGTCGCTCCACACGTCGTCGAGCACCAGGAAGAACCTCTTGTCCCTGATGGCGTCCACGAGTGTGGGCACCAGCAGTGACTTGTTGCTCTCTCGACCATCGCTGGCACCGCCGACAGAGACGGACCTAATGGCCATCCTAAGGAGCTCCACCTCGTTCACGTCTTGTGTCACGCTCAACCATATCTTTTTGTCGAACGCTTCCTTGATGGCCTCGTCATTGAACACCTTTTTCGCCAGCGTCGTCTTGCCGATCCCGCCGGTGCCCACCACGGCGACCACCACCACTGCATTCTGCTTCTTGTTCTTGCCGTTGGTGAGCATCTTCACCAGTGTCCTGGTATCCTCCTCGATCTTCTCTCCGACCACAGCCGACCGCTCCAGCACCGGGTCCGTCTTGCGGTCGGCGGCACTAGGTCGGCGAGGCGCCGCCATGTCCTCGTAGGCCTCCAGCTTGAGGAAGCTGAAGGCGGCGGCGCTCTTGCAGATGGCGTCGAGCCTGGCGTTGAGCGCCTTGATGCGGCTACCAATGTCGTGGGCGAAGAGCGGATTGCGGAGACAGAAGAGCAGCGAGTCCAGGCAGCTGATGTTGACGGGAGGTGCGGATGAGCCGACGCCGCCACGCTGCATGGCCTTGAGGTGGCAAAGGTCGAGGATGTCGGTGACGTCGTACATGACGTCCTTGAGCTTCCTGACCCAGCCCTGGACGCTCTGGTCGGTGATGCGGCGGCGCTCGGCGTCGGCGAGGTAGTCCTTGAGGCTGTTGAGCCTTTCGTGGAGGCTGGCGATCTCGCTGGAGACGCCGAGCAGGAGGGTGAGCTCGTCCTGGGCCACCTGCTTGAGCAGGTCGCCGACGTAGGACGCGAAGGCATCCAGGACGATGGCCATAGCTAGCTAGTTG
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| CDS seq | ATGGCCATCGTCCTGGATGCCTTCGCGTCCTACGTCGGCGACCTGCTCAAGCAGGTGGCCCAGGACGAGCTCACCCTCCTGCTCGGCGTCTCCAGCGAGATCGCCAGCCTCCACGAAAGGCTCAACAGCCTCAAGGACTACCTCGCCGACGCCGAGCGCCGCCGCATCACCGACCAGAGCGTCCAGGGCTGGGTCAGGAAGCTCAAGGACGTCATGTACGACGTCACCGACATCCTCGACCTTTGCCACCTCAAGGCCATGCAGCGTGGCGGCGTCGGCTCATCCGCACCTCCCGTCAACATCAGCTGCCTGGACTCGCTGCTCTTCTGTCTCCGCAATCCGCTCTTCGCCCACGACATTGGTAGCCGCATCAAGGCGCTCAACGCCAGGCTCGACGCCATCTGCAAGAGCGCCGCCGCCTTCAGCTTCCTCAAGCTGGAGGCCTACGAGGACATGGCGGCGCCTCGCCGACCTAGTGCCGCCGACCGCAAGACGGACCCGGTGCTGGAGCGGTCGGCTGTGGTCGGAGAGAAGATCGAGGAGGATACCAGGACACTGGTGAAGATGCTCACCAACGGCAAGAACAAGAAGCAGAATGCAGTGGTGGTGGTCGCCGTGGTGGGCACCGGCGGGATCGGCAAGACGACGCTGGCGAAAAAGGTGTTCAATGACGAGGCCATCAAGGAAGCGTTCGACAAAAAGATATGGTTGAGCGTGACACAAGACGTGAACGAGGTGGAGCTCCTTAGGATGGCCATTAGGTCCGTCTCTGTCGGCGGTGCCAGCGATGGTCGAGAGAGCAACAAGTCACTGCTGGTGCCCACACTCGTGGACGCCATCAGGGACAAGAGGTTCTTCCTGGTGCTCGACGACGTGTGGAGCGACAGAGCATGGAGCGGCCTGCTCAAGGTGCCCTTCAGCCATGGCGCCGCCGGCAGTCGTGTCCTCGTCACCACCCGCCATGACGCCGTCGCCCGGGGTATGCAAGCCATGCACCCCTTCCACCACGTCGACAAACTGTGCCCTCCAGATGCATGGTCACTGCTCAAGAAACAGGTAGTTTCAAGTGAGATGGAGGACGTTGAGATTGATGAGACGCTCAAGGACATCGGAATGGAGATAATAGACAAATGTGGTGGATTGCCTCTTGCTGTCAAAGTAATGGGGGGACTCTTGTGCCAAAAGGAGAGACGGCGAGCAGATTGGGAGAAAATTTTGCATGATTCTATATGGTCAGTACCTCAAATGCCTGATGAGCTAAACTATACTATATACTTGAGCTATCAAGATTTGCACCCTTGTCTGAAGCAGTGCTTTCTGCACTACTCCCTCCTCCCCAAAAATGTGGATTTCTTCATTGACACAGTTACTAGCATGTGGATAAGTGAAGGATTTCTTCATGGGGAAACTGATGATTTAGAACAATTAGGAGAAGAGTGCTATAAAGAGTTAATTTACAGAAACTTAATAGAGCCAAATGCGGAGTACGCTGGAGAATGGGTTAGCACCATGCATGATGTTGTTCGCTCATTTGCTCAACATCTGGCTAGAGATGAAGCACTTGTAATTTCATCTAGAGATGAAATAGGCAGGGGTGCACTTAAATCACATAAATTTCTCAGGTTGTCTATAGAAACAGATGATTTGCAACCGAATGATGAATTTGGGTGGAAAATTATACAAGGGCAAAAATCACTTAGAACACTAATACTAGTTGGTGAGCTTAAGATTAACCCAGGGGATTCATTGATTACTCTTTCAAGCCTAAGGACTCTACACATAGAAAATGCCAACTGTACTTCCACATTGGTTGAATCATTGCATCAACTCAAACACTTGAGGTACATCTCCCTAAAATGTGGTGACATAACTAGATTGCCAGAAAACATTGGCAAGATGAGATTCTTGCAGTACCTTGGCCTTGTATGTGAGAATTTGGACAGGCTTCCTAATAGCATTGTAAAGCTAGGACAATTGAGGTATCTTGACCTTAGTGGCACAAGTATAACTAGTATACCTCGAGGGTTTTGTGGCCTAACAAGCTTGAGGACTTTATATGGTTTTCCAACCCAAGTAGATGGTGATTAG
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| Protein seq | MAIVLDAFASYVGDLLKQVAQDELTLLLGVSSEIASLHERLNSLKDYLADAERRRITDQSVQGWVRKLKDVMYDVTDILDLCHLKAMQRGGVGSSAPPVNISCLDSLLFCLRNPLFAHDIGSRIKALNARLDAICKSAAAFSFLKLEAYEDMAAPRRPSAADRKTDPVLERSAVVGEKIEEDTRTLVKMLTNGKNKKQNAVVVVAVVGTGGIGKTTLAKKVFNDEAIKEAFDKKIWLSVTQDVNEVELLRMAIRSVSVGGASDGRESNKSLLVPTLVDAIRDKRFFLVLDDVWSDRAWSGLLKVPFSHGAAGSRVLVTTRHDAVARGMQAMHPFHHVDKLCPPDAWSLLKKQVVSSEMEDVEIDETLKDIGMEIIDKCGGLPLAVKVMGGLLCQKERRRADWEKILHDSIWSVPQMPDELNYTIYLSYQDLHPCLKQCFLHYSLLPKNVDFFIDTVTSMWISEGFLHGETDDLEQLGEECYKELIYRNLIEPNAEYAGEWVSTMHDVVRSFAQHLARDEALVISSRDEIGRGALKSHKFLRLSIETDDLQPNDEFGWKIIQGQKSLRTLILVGELKINPGDSLITLSSLRTLHIENANCTSTLVESLHQLKHLRYISLKCGDITRLPENIGKMRFLQYLGLVCENLDRLPNSIVKLGQLRYLDLSGTSITSIPRGFCGLTSLRTLYGFPTQVDGD |
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| Function | Putative disease resistance protein RGA4 [UniProtKB/Swiss-Prot:Q7XA39] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0250700 | OsNip_05t0250700-00 | Chr05 | 9151522 | 9154993 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCCATCGTCCTGGATGCCTTCGCGTCCTACGTCGGCGACCTGCTCAAGCAGGTGGCCCAGGACGAGCTCACCCTCCTGCTCGGCGTCTCCAGCGAGATCGCCAGCCTCCACGAAAGGCTCAACAGCCTCAAGGACTACCTCGCCGACGCCGAGCGCCGCCGCATCACCGACCAGAGCGTCCAGGGCTGGGTCAGGAAGCTCAAGGACGTCATGTACGACGTCACCGACATCCTCGACCTTTGCCACCTCAAGGCCATGCAGCGTGGCGGCGTCGGCTCATCCGCACCTCCCGTCAACATCAGCTGCCTGGACTCGCTGCTCTTCTGTCTCCGCAATCCGCTCTTCGCCCACGACATTGGTAGCCGCATCAAGGCGCTCAACGCCAGGCTCGACGCCATCTGCAAGAGCGCCGCCGCCTTCAGCTTCCTCAAGCTGGAGGCCTACGAGGACATGGCGGCGCCTCGCCGACCTAGTGCCGCCGACCGCAAGACGGACCCGGTGCTGGAGCGGTCGGCTGTGGTCGGAGAGAAGATCGAGGAGGATACCAGGACACTGGTGAAGATGCTCACCAACGGCAAGAACAAGAAGCAGAATGCAGTGGTGGTGGTCGCCGTGGTGGGCACCGGCGGGATCGGCAAGACGACGCTGGCGAAAAAGGTGTTCAATGACGAGGCCATCAAGGAAGCGTTCGACAAAAAGATATGGTTGAGCGTGACACAAGACGTGAACGAGGTGGAGCTCCTTAGGATGGCCATTAGGTCCGTCTCTGTCGGCGGTGCCAGCGATGGTCGAGAGAGCAACAAGTCACTGCTGGTGCCCACACTCGTGGACGCCATCAGGGACAAGAGGTTCTTCCTGGTGCTCGACGACGTGTGGAGCGACAGAGCATGGAGCGGCCTGCTCAAGGTGCCCTTCAGCCATGGCGCCGCCGGCAGTCGTGTCCTCGTCACCACCCGCCATGACGCCGTCGCCCGGGGTATGCAAGCCATGCACCCCTTCCACCACGTCGACAAACTGTGCCCTCCAGATGCATGGTCACTGCTCAAGAAACAGGTAGTTTCAAGTGAGATGGAGGACGTTGAGATTGATGAGACGCTCAAGGACATCGGAATGGAGATAATAGACAAATGTGGTGGATTGCCTCTTGCTGTCAAAGTAATGGGGGGACTCTTGTGCCAAAAGGAGAGACGGCGAGCAGATTGGGAGAAAATTTTGCATGATTCTATATGGTCAGTACCTCAAATGCCTGATGAGCTAAACTATACTATATACTTGAGCTATCAAGATTTGCACCCTTGTCTGAAGCAGTGCTTTCTGCACTACTCCCTCCTCCCCAAAAATGTGGATTTCTTCATTGACACAGTTACTAGCATGTGGATAAGTGAAGGATTTCTTCATGGGGAAACTGATGATTTAGAACAATTAGGAGAAGAGTGCTATAAAGAGTTAATTTACAGAAACTTAATAGAGCCAAATGCGGAGTACGCTGGAGAATGGGTTAGCACCATGCATGATGTTGTTCGCTCATTTGCTCAACATCTGGCTAGAGATGAAGCACTTGTAATTTCATCTAGAGATGAAATAGGCAGGGGTGCACTTAAATCACATAAATTTCTCAGGTTGTCTATAGAAACAGATGATTTGCAACCGAATGATGAATTTGGGTGGAAAATTATACAAGGGCAAAAATCACTTAGAACACTAATACTAGTTGGTGAGCTTAAGATTAACCCAGGGGATTCATTGATTACTCTTTCAAGCCTAAGGACTCTACACATAGAAAATGCCAACTGTACTTCCACATTGGTTGAATCATTGCATCAACTCAAACACTTGAGGTACATCTCCCTAAAATGTGGTGACATAACTAGATTGCCAGAAAACATTGGCAAGATGAGATTCTTGCAGTACCTTGGCCTTGTATGTGAGAATTTGGACAGGCTTCCTAATAGCATTGTAAAGCTAGGACAATTGAGGTATCTTGACCTTAGTGGCACAAGTATAACTAGTATACCTCGAGGGTTTTGTGGCCTAACAAGCTTGAGGACTTTATATGGTTTTCCAACCCAAGTAGATGGTGATTAG
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| Protein seq | MAIVLDAFASYVGDLLKQVAQDELTLLLGVSSEIASLHERLNSLKDYLADAERRRITDQSVQGWVRKLKDVMYDVTDILDLCHLKAMQRGGVGSSAPPVNISCLDSLLFCLRNPLFAHDIGSRIKALNARLDAICKSAAAFSFLKLEAYEDMAAPRRPSAADRKTDPVLERSAVVGEKIEEDTRTLVKMLTNGKNKKQNAVVVVAVVGTGGIGKTTLAKKVFNDEAIKEAFDKKIWLSVTQDVNEVELLRMAIRSVSVGGASDGRESNKSLLVPTLVDAIRDKRFFLVLDDVWSDRAWSGLLKVPFSHGAAGSRVLVTTRHDAVARGMQAMHPFHHVDKLCPPDAWSLLKKQVVSSEMEDVEIDETLKDIGMEIIDKCGGLPLAVKVMGGLLCQKERRRADWEKILHDSIWSVPQMPDELNYTIYLSYQDLHPCLKQCFLHYSLLPKNVDFFIDTVTSMWISEGFLHGETDDLEQLGEECYKELIYRNLIEPNAEYAGEWVSTMHDVVRSFAQHLARDEALVISSRDEIGRGALKSHKFLRLSIETDDLQPNDEFGWKIIQGQKSLRTLILVGELKINPGDSLITLSSLRTLHIENANCTSTLVESLHQLKHLRYISLKCGDITRLPENIGKMRFLQYLGLVCENLDRLPNSIVKLGQLRYLDLSGTSITSIPRGFCGLTSLRTLYGFPTQVDGD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g16200 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0250700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0009050 | RBH | 0.0 | 0.585486 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0009100 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0008990 | RBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0009070 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0009140 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0138100 | RBH | 0.0400095 | 0.2651575 | 0.031298 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0009000 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0137300 | RBH | 0.0734845 | 0.0439625 | 0.053417 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0008970 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0008920 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0009020 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0009090 | RBH | 0.0 | 0.223601 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0009040 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G008870 | RBH | 0.0 | 0.0 | 0.083296 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0009160 | RBH | 0.0 | 0.915655 | 0.0 |
