Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_05g0224700 | OGI:05020660 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr05:7628540-7630705 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCGAGCTTGGGCCTGGCGCCGCACGGCCTTTCTCCGCAATGTACCTGCGCTGCTGCGCATGGTCCTCATGCAGCGTGAAGCTAGCACATACAGGTACAGATTACTAAGCCAGTTTAGAATAAAATAATATGTATAAAAAAAAGGAGAAAAAAATAATAGGATTTTTAGCCTTTTCATAATAATCTTTTAACAAATGCAATTTACTACAGATTACTCGGAATGAGGAAAAGTCACTTCATGTTAATATCATGTGTTTCAAGAGAATAAAATAAATAAATAGTTAAATCAAATGGAAAAAAAATAGTGACAGCAAGGATTGCGTTAGGACAATTAAAAATCTTCAGATAAGATTTACTTGAAACGAGGAAAATACCTTAATTTCTATAGAATGGAAGGAATAGAAGTGAAATTTCCATGTGAACCGAGAAGTTTATAACTACTTTCCTATTAATTCAGAGTATTTTTGTTTTTTTTTCTCCTCACATTATACTTTTTTATGTTAGGAATTCATTTATTTTAGAACATTGGTAAGTAACAACAATCATATTGCTATTTTTTTATTGCGAAACACAATAGATATAGATGTTCATATACACGTGTGTATACATACCTGTAAACGCACACATACAAACCCAATCACTACAAGCACCTCCGAAGATTGGGCCGTCAGGCATATCTTAGGAGTGATGAAGAATGGTGGGTTTCCTACCATTGAAAAAACAAATAGCCGTAAATACAAGCGTCTATGCTAAGTTTAGAACTTAACTCGTATAGGTAGAGAACCTGACCAGCTGAGCTCTACATAGTAGTATATCTGGATATATGAAATCAAAATAAGTGTCTTTACCATGTCATCGTCCTTTATTTCTAAATGAAATTAGTATAAAATTTAGGTAATCGAAGACACGTTTATTTCGGATATGTATTTCCTACTAATACGAACTCAATGGCTTACATCTATATGTTGGATATTAATAAAACATATATTTTTACTAATGTTCAGCATGACAATACCACTAATCTAGATGATTTTACTATTCTACCTTATTTTGTTCACAAACATAAAAATAAAAGGGAATGGACTTTCAACAATCCTTTTCGATGTATGATTTCTGAAGGGAAATACACACATGCTATAAACTAACTTAGCTAGCGTGACAACTGGCACGCTCATTTTCTAGTTACATTCTTAAAAATGTGTACTAGCATAGAATTAAGGATACCATTAAATTGAACTTTAATTAAGTGCATATGCCTAAAATTGTTGGATCACGGTTTTACATGATGGGTTACAAGACCGAGGCTTATTATATCCTATCATTTCCAGCATGTACTTGCATTATCCATTTTTTCTTTACCATTTAATTTTTTGCTCCTTAGTGTTTATATGCTGAATTGTTGGTGCAAACATGAGAAAATTTGGTTTATATGTCCTTGAAAATATCTGCAAAATTTTATATTCTTTGTATCAGCACAGTAAGTATGCATATTTATGCCCTTGATAGCATAAGACACAACATTCCTAGCTTTGTGCAGTAATCTCTTAAGCATTTGTGGATGTTATTCTGATTCAAAGATTGACACAACCACATAGGCTGACATCTTGTATATTGGGACCTTTGGCAGGCAATCGGCCATGGTTTTCCTTAAGGTGGATATGTCTTGGAATGTGTTGATCTCACCTAGCGAGCTGAGCCCCAAGGGTCTCTTGCTCCGCAAGGCTGTCATTGTTAGTCTTCTGGAGGAGATAGCAAACAGGAAGGCCTCCAAGGATCATGGTTACTACATTGCTGTCAGTGAGCTGAAGGCGATATCAGAAGGGAAAGTGCGCGAGCTGACCGGAGATGTTCTTTTCCCAGTGACATTCACCTGCATCACACAGAAGCCTACGAAGGGCGAGATCTTAGTTGGCTCTGTGGATAAGATCCTCAAGCATGGCGTGTTCCTCAAATCTGGACCAATAGAAAGCATCTTCCTGTCAGAGAAGACACTGAGCGACTACAAGTACATCGGTGGGGAGAACCCTATGTTCATGAATGACCACTCGAAGCTGGAGAAGGACACCGCTGTGCGCTTCAAGGTGATGGGTTTCCGCTGGATGGAAGCTGATCGCCAGTTCCAGATCCTTGCTACCCTGGCTGGTGACTATCTTGGGCCACTATGA
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| CDS seq | ATGCGAGCTTGGGCCTGGCGCCGCACGGCCTTTCTCCGCAATGTACCTGCGCTGCTGCGCATGGTCCTCATGCAGCGTGAAGCTAGCACATACAGGCAATCGGCCATGGTTTTCCTTAAGGTGGATATGTCTTGGAATGTGTTGATCTCACCTAGCGAGCTGAGCCCCAAGGGTCTCTTGCTCCGCAAGGCTGTCATTGTTAGTCTTCTGGAGGAGATAGCAAACAGGAAGGCCTCCAAGGATCATGGTTACTACATTGCTGTCAGTGAGCTGAAGGCGATATCAGAAGGGAAAGTGCGCGAGCTGACCGGAGATGTTCTTTTCCCAGTGACATTCACCTGCATCACACAGAAGCCTACGAAGGGCGAGATCTTAGTTGGCTCTGTGGATAAGATCCTCAAGCATGGCGTGTTCCTCAAATCTGGACCAATAGAAAGCATCTTCCTGTCAGAGAAGACACTGAGCGACTACAAGTACATCGGTGGGGAGAACCCTATGTTCATGAATGACCACTCGAAGCTGGAGAAGGACACCGCTGTGCGCTTCAAGGTGATGGGTTTCCGCTGGATGGAAGCTGATCGCCAGTTCCAGATCCTTGCTACCCTGGCTGGTGACTATCTTGGGCCACTATGA
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| Protein seq | MRAWAWRRTAFLRNVPALLRMVLMQREASTYRQSAMVFLKVDMSWNVLISPSELSPKGLLLRKAVIVSLLEEIANRKASKDHGYYIAVSELKAISEGKVRELTGDVLFPVTFTCITQKPTKGEILVGSVDKILKHGVFLKSGPIESIFLSEKTLSDYKYIGGENPMFMNDHSKLEKDTAVRFKVMGFRWMEADRQFQILATLAGDYLGPL |
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| Function | DNA-directed RNA polymerase V subunit 7 [UniProtKB/Swiss-Prot:A6QRA1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0224700 | OsNip_05t0224700-00 | Chr05 | 7628540 | 7630705 | + | RAP2018-11-26 | ||
| CDS seq | ATGCGAGCTTGGGCCTGGCGCCGCACGGCCTTTCTCCGCAATGTACCTGCGCTGCTGCGCATGGTCCTCATGCAGCGTGAAGCTAGCACATACAGGCAATCGGCCATGGTTTTCCTTAAGGTGGATATGTCTTGGAATGTGTTGATCTCACCTAGCGAGCTGAGCCCCAAGGGTCTCTTGCTCCGCAAGGCTGTCATTGTTAGTCTTCTGGAGGAGATAGCAAACAGGAAGGCCTCCAAGGATCATGGTTACTACATTGCTGTCAGTGAGCTGAAGGCGATATCAGAAGGGAAAGTGCGCGAGCTGACCGGAGATGTTCTTTTCCCAGTGACATTCACCTGCATCACACAGAAGCCTACGAAGGGCGAGATCTTAGTTGGCTCTGTGGATAAGATCCTCAAGCATGGCGTGTTCCTCAAATCTGGACCAATAGAAAGCATCTTCCTGTCAGAGAAGACACTGAGCGACTACAAGTACATCGGTGGGGAGAACCCTATGTTCATGAATGACCACTCGAAGCTGGAGAAGGACACCGCTGTGCGCTTCAAGGTGATGGGTTTCCGCTGGATGGAAGCTGATCGCCAGTTCCAGATCCTTGCTACCCTGGCTGGTGACTATCTTGGGCCACTATGA
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| Protein seq | MRAWAWRRTAFLRNVPALLRMVLMQREASTYRQSAMVFLKVDMSWNVLISPSELSPKGLLLRKAVIVSLLEEIANRKASKDHGYYIAVSELKAISEGKVRELTGDVLFPVTFTCITQKPTKGEILVGSVDKILKHGVFLKSGPIESIFLSEKTLSDYKYIGGENPMFMNDHSKLEKDTAVRFKVMGFRWMEADRQFQILATLAGDYLGPL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.385693 | 0.000000 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0157100 | RBH | 0.0 | 0.542102 | 7.781807 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g13770 | RBH | 0.205210 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0224700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0004120 | SBH | 0.599292 | 2.759338 | 5.076715 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0004160 | SBH | 0.134519 | 0.0 | 2.334098 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0004100 | SBH | 0.0 | 13.250924 | 7.081999 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0004160 | SBH | 0.141777 | 0.244623 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0004220 | SBH | 4.923542 | 11.666125 | 14.816510 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0116100 | RBH | 0.327409 | 0.2513625 | 0.0873245 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0004000 | SBH | 0.408530 | 0.771104 | 1.837079 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0050400 | SBH | 16.865208 | 19.8294055 | 90.729084 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0004130 | SBH | 0.479909 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0004040 | SBH | 1.759267 | 16.248854 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0004150 | SBH | 0.000000 | 25.151007 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0004170 | SBH | 1.550301 | 1.679006 | 1.401672 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0004220 | SBH | 0.525948 | 4.531595 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G004060 | SBH | 0.657106 | 4.536473 | 4.317791 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0004260 | SBH | 0.000000 | 9.735919 | 16.562376 |
