Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_05g0180300 | OGI:05013440 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr05:4813366-4815407 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CCAAGAATCCAGACTGAATATCATAATAATAATAATCGAATAATAACAGTAAGTAGGTGTGATACAAAAGTAATTTAATTAGGAAAGATTTCTTGATCTAAAAACATATCCCCCGGCTCTCAGCTGAAGCTTTCACTGAAGAAGAAACCATCAAAAGCTTCACTCTATACAACCCGAAATAATAACACTGCAACACTCAAATCCTCCTCAATTCATCACCTTAAACCTGTCTCTCTCAAACAGCTTATTATTCACAACCCAATTATCGCAATTAGCCATAAACCTAAAGCTCAGATTGCTCCCTCCTTGCAAAGCCAAACTCCCCCCACATCACCTACCTCCAACCCATTTCGCCATCACCGCGAAAATTCAGGCCAGTTGATGACGATGACGACGACGCAGAAGAACAGACACCAACCAATGCAAAATCAACTAAGTGATGATATATATATGGCACTTTACTCTTGTTTACGCCGGTAGCTATCATCAATCAAGAACTCTACTAATGTAAGCATAACAACAATTGACCACGTACAATTGTGAACGGCGAGCTCGTCGGTTTTCTCTTCCATTTCGACGGCGAGGGGGGGAAGGTGGCAATGTTTGTCTTGTGAAAGAATCATCGGTAAAGCGGCGGTGGCGGCGGCGAGGCGTATGGGACGGGGTACACCGGCGGCAATGGGCCGGGGTATGCGGGCGGCGGAGGTGGCGGCAATAGCGGCGAGGGGACGAACGGTTTGCACTGGAACGCGGCGCAGTCGACGGGCGGCGCGGCGTAGAACGCGGCGCACTGCCGCGGCGTGCGCTGGTAGGGGCGGTTGGGGAGGCAATTCCGGCGGTCGCCGTCGGCCGCCGGCACGACGCGCGCGCAGGACGGCGGCTCGCCGGTGAAGTAGTTGTAGGAGAAGGTGAAGTTCTTGAGGCGGGGCAGGTCGCACACGGCCTCCGGCACGGCGCCGGCGAGGCGGTTGTGCGCGACGTCGAGCTGCTCCACCTTCCGCATCCCGGTCACCTCCGGCGGGAGCGGGCCGGCGAGCGAGTTGAAGCTGACGTCGAACACGGTGACCTCCCGGAGCAAGCCGACCTCGGGCGGGACGCAGGAGTCGAGGCCATTGTTGATGAGGAGGATCTCGTTGAGCGTGGCCGACATGTTCCCGAGGCTCGCCGGGAGGCAGCCGCCGAAGTGGTTGCCGGCGAGGACGATGACGGAGGCGGGGGAGTTGCCGAAGTTGTCGGGGAGGGCGAAGCGGAGGCGGTTGTGGTTGAGGAAGATGGCGTCGAGCGGGAGGTCGAACAGCTGGCGCGGGACGGCGCCCTCGAAGTCGTTGTAGCGGAGGTCGAGGAACCTGAGCGCCGGGAGGTCGAGCACGGCGGAGGGGAAGGCGCCGACGAGGCGGTTGTTGCTGAGGTCGAGCTCGTGGAGGCGGCGGAGGCGGCGGAGGGCGTCCGGGACGAGGCCGCAGAAGCGGTTGGAGTTGAGGTGGAGCAGCGCGAGGTCGGTGAGCAACCCGAGCTCGGCGGGGAGGTACCCCGCGATGTCGCCGTGGTTGAGGTCAACCCCGGCGACGGCGACCTCCCCCGGCGCGCCGCCGGCGCCGGGGAGCGGCGCGCAGAAGACGCCGGTGTAGGCGCACACGGCGGGGCCGACCCAGTCGGCGGTGAGGTTCTTGGGGTCGGAGAAGATGGCCGTCTGCTTCCACGTCTGCAGCGCCACGTACGCGTCACGCAGCCTCGCGCTCGGAAACCTCCACGCCGGGTCCACCACCACCGCCGCCGCCGCCGCCGCCGCCTCGCCGCCGGCAGCAACGACCCAGCTCACCACCACCACCACCACCATGGCCACTAACACCACCTCCTTCCTCATCGCGAAACTCTCATACCACCACAAAAAAGAAGCCGAAATGATCGCCGAAGAACAAGGAATCAAGAACAACAGCTGGAAATGGCAATGCGGGGTGGGATTTGGGAGTTCTTGGGAGGTGGAGAGGTGAGTGGAGTGGAGAGGAGGACAGCTATGGCACAGCTCAGAGGTGGGGGACGCG
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| CDS seq | ATGAGGAAGGAGGTGGTGTTAGTGGCCATGGTGGTGGTGGTGGTGGTGAGCTGGGTCGTTGCTGCCGGCGGCGAGGCGGCGGCGGCGGCGGCGGCGGTGGTGGTGGACCCGGCGTGGAGGTTTCCGAGCGCGAGGCTGCGTGACGCGTACGTGGCGCTGCAGACGTGGAAGCAGACGGCCATCTTCTCCGACCCCAAGAACCTCACCGCCGACTGGGTCGGCCCCGCCGTGTGCGCCTACACCGGCGTCTTCTGCGCGCCGCTCCCCGGCGCCGGCGGCGCGCCGGGGGAGGTCGCCGTCGCCGGGGTTGACCTCAACCACGGCGACATCGCGGGGTACCTCCCCGCCGAGCTCGGGTTGCTCACCGACCTCGCGCTGCTCCACCTCAACTCCAACCGCTTCTGCGGCCTCGTCCCGGACGCCCTCCGCCGCCTCCGCCGCCTCCACGAGCTCGACCTCAGCAACAACCGCCTCGTCGGCGCCTTCCCCTCCGCCGTGCTCGACCTCCCGGCGCTCAGGTTCCTCGACCTCCGCTACAACGACTTCGAGGGCGCCGTCCCGCGCCAGCTGTTCGACCTCCCGCTCGACGCCATCTTCCTCAACCACAACCGCCTCCGCTTCGCCCTCCCCGACAACTTCGGCAACTCCCCCGCCTCCGTCATCGTCCTCGCCGGCAACCACTTCGGCGGCTGCCTCCCGGCGAGCCTCGGGAACATGTCGGCCACGCTCAACGAGATCCTCCTCATCAACAATGGCCTCGACTCCTGCGTCCCGCCCGAGGTCGGCTTGCTCCGGGAGGTCACCGTGTTCGACGTCAGCTTCAACTCGCTCGCCGGCCCGCTCCCGCCGGAGGTGACCGGGATGCGGAAGGTGGAGCAGCTCGACGTCGCGCACAACCGCCTCGCCGGCGCCGTGCCGGAGGCCGTGTGCGACCTGCCCCGCCTCAAGAACTTCACCTTCTCCTACAACTACTTCACCGGCGAGCCGCCGTCCTGCGCGCGCGTCGTGCCGGCGGCCGACGGCGACCGCCGGAATTGCCTCCCCAACCGCCCCTACCAGCGCACGCCGCGGCAGTGCGCCGCGTTCTACGCCGCGCCGCCCGTCGACTGCGCCGCGTTCCAGTGCAAACCGTTCGTCCCCTCGCCGCTATTGCCGCCACCTCCGCCGCCCGCATACCCCGGCCCATTGCCGCCGGTGTACCCCGTCCCATACGCCTCGCCGCCGCCACCGCCGCTTTACCGATGA
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| Protein seq | MRKEVVLVAMVVVVVVSWVVAAGGEAAAAAAAVVVDPAWRFPSARLRDAYVALQTWKQTAIFSDPKNLTADWVGPAVCAYTGVFCAPLPGAGGAPGEVAVAGVDLNHGDIAGYLPAELGLLTDLALLHLNSNRFCGLVPDALRRLRRLHELDLSNNRLVGAFPSAVLDLPALRFLDLRYNDFEGAVPRQLFDLPLDAIFLNHNRLRFALPDNFGNSPASVIVLAGNHFGGCLPASLGNMSATLNEILLINNGLDSCVPPEVGLLREVTVFDVSFNSLAGPLPPEVTGMRKVEQLDVAHNRLAGAVPEAVCDLPRLKNFTFSYNYFTGEPPSCARVVPAADGDRRNCLPNRPYQRTPRQCAAFYAAPPVDCAAFQCKPFVPSPLLPPPPPPAYPGPLPPVYPVPYASPPPPPLYR |
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| Function | Leucine-rich repeat extensin-like protein 4 [UniProtKB/Swiss-Prot:Q9LHF1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0180300 | OsNip_05t0180300-01 | Chr05 | 4813366 | 4815407 | - | RAP2018-11-26 | ||
| CDS seq | ATGAGGAAGGAGGTGGTGTTAGTGGCCATGGTGGTGGTGGTGGTGGTGAGCTGGGTCGTTGCTGCCGGCGGCGAGGCGGCGGCGGCGGCGGCGGCGGTGGTGGTGGACCCGGCGTGGAGGTTTCCGAGCGCGAGGCTGCGTGACGCGTACGTGGCGCTGCAGACGTGGAAGCAGACGGCCATCTTCTCCGACCCCAAGAACCTCACCGCCGACTGGGTCGGCCCCGCCGTGTGCGCCTACACCGGCGTCTTCTGCGCGCCGCTCCCCGGCGCCGGCGGCGCGCCGGGGGAGGTCGCCGTCGCCGGGGTTGACCTCAACCACGGCGACATCGCGGGGTACCTCCCCGCCGAGCTCGGGTTGCTCACCGACCTCGCGCTGCTCCACCTCAACTCCAACCGCTTCTGCGGCCTCGTCCCGGACGCCCTCCGCCGCCTCCGCCGCCTCCACGAGCTCGACCTCAGCAACAACCGCCTCGTCGGCGCCTTCCCCTCCGCCGTGCTCGACCTCCCGGCGCTCAGGTTCCTCGACCTCCGCTACAACGACTTCGAGGGCGCCGTCCCGCGCCAGCTGTTCGACCTCCCGCTCGACGCCATCTTCCTCAACCACAACCGCCTCCGCTTCGCCCTCCCCGACAACTTCGGCAACTCCCCCGCCTCCGTCATCGTCCTCGCCGGCAACCACTTCGGCGGCTGCCTCCCGGCGAGCCTCGGGAACATGTCGGCCACGCTCAACGAGATCCTCCTCATCAACAATGGCCTCGACTCCTGCGTCCCGCCCGAGGTCGGCTTGCTCCGGGAGGTCACCGTGTTCGACGTCAGCTTCAACTCGCTCGCCGGCCCGCTCCCGCCGGAGGTGACCGGGATGCGGAAGGTGGAGCAGCTCGACGTCGCGCACAACCGCCTCGCCGGCGCCGTGCCGGAGGCCGTGTGCGACCTGCCCCGCCTCAAGAACTTCACCTTCTCCTACAACTACTTCACCGGCGAGCCGCCGTCCTGCGCGCGCGTCGTGCCGGCGGCCGACGGCGACCGCCGGAATTGCCTCCCCAACCGCCCCTACCAGCGCACGCCGCGGCAGTGCGCCGCGTTCTACGCCGCGCCGCCCGTCGACTGCGCCGCGTTCCAGTGCAAACCGTTCGTCCCCTCGCCGCTATTGCCGCCACCTCCGCCGCCCGCATACCCCGGCCCATTGCCGCCGGTGTACCCCGTCCCATACGCCTCGCCGCCGCCACCGCCGCTTTACCGATGA
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| Protein seq | MRKEVVLVAMVVVVVVSWVVAAGGEAAAAAAAVVVDPAWRFPSARLRDAYVALQTWKQTAIFSDPKNLTADWVGPAVCAYTGVFCAPLPGAGGAPGEVAVAGVDLNHGDIAGYLPAELGLLTDLALLHLNSNRFCGLVPDALRRLRRLHELDLSNNRLVGAFPSAVLDLPALRFLDLRYNDFEGAVPRQLFDLPLDAIFLNHNRLRFALPDNFGNSPASVIVLAGNHFGGCLPASLGNMSATLNEILLINNGLDSCVPPEVGLLREVTVFDVSFNSLAGPLPPEVTGMRKVEQLDVAHNRLAGAVPEAVCDLPRLKNFTFSYNYFTGEPPSCARVVPAADGDRRNCLPNRPYQRTPRQCAAFYAAPPVDCAAFQCKPFVPSPLLPPPPPPAYPGPLPPVYPVPYASPPPPPLYR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.469534 | 0.245225 | 3.289913 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0180000 | RBH | 0.0 | 0.0 | 6.534926 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g08770 | RBH | 0.256786 | 0.133385 | 0.684889 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0180300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0005490 | RBH | 0.185977 | 5.108033 | 4.938090 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0005460 | RBH | 0.0 | 3.236150 | 3.390030 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0005360 | RBH | 0.0 | 7.357165 | 4.716705 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0005440 | RBH | 0.0 | 0.086845 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0005550 | RBH | 0.0 | 0.0 | 4.550650 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0072700 | RBH | 3.543823 | 1.9019215 | 2.270341 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0005320 | RBH | 0.055131 | 0.182789 | 0.456230 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0074200 | RBH | 3.6908135 | 0.7022005 | 7.5539325 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0005460 | RBH | 0.041890 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0005390 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0005470 | RBH | 1.273358 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0005500 | RBH | 0.086516 | 0.272054 | 0.234983 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0005510 | RBH | 0.0 | 0.792380 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G005340 | RBH | 0.062265 | 0.0 | 2.987839 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0005560 | RBH | 0.0 | 3.424559 | 1.610962 |
