Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_05g0170700 | OGI:05011260 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr05:4236343-4240173 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AATATCACAGTGCAAACCCTCCACCAACAACATTAAAACATAAAACATTATTATGTTGTATATAAGTGCCAAAAATGGCAAGCACTCCCAAAAGAAAAAAAACAATCAGGGTGACTCCAAAGTTAACCTATTGATATTTTGACCTATACTGCCCCCTTGCAGGTAGATATCATAACAAATCTTGCACATATATGCAGTACTACTTGAGATGTCATTACCATCGAAATCAGCAAAGATCTGGTGTCGCCTACGCCACTGCGAAATAGACGCGACAAATCCAGCAATCAAGAAAACTATTAGAAGAACAGCTGCTATGTAGAATGAAACACGCCGAGCAGTTCCTGCCAAGCCTTTCCTGTGAACTGGGAAGAGAAAATGACTCTAATTAGAACATGCAGGAGGGCATGAATGCCCAAACTTGCTTGCTTCACACAAATTTGTTTAAATAATGGTTCATATGCAGTTAAATGTCCCAGAATTTGGGTGGTGAACAATTTGTATTACTGATTGGTTCTTCTATGCTGACAGCAACTGGTTCTTCTGCTGCAGAAGGGACAGCAATCGTCTCTTCTATCACAGAAGTACAGGTTCCTTCACAACTGAAGTTTTGTATCAAAGGATTTCCACGAAGGCTTATCAAGTATGACAAGTGAGAAAAACAGAGAAAAGAGAAGGCAAATTAGTGGTAACCCCTGAGAGATAATGTTGAGACAGGTTGCACTATTTAGTTAGACCAAGAAAGAAAAACTCATTCTAAATCACTTACAATACACTATTCGCGCTAAAAACTGGTGCTGGACCACTCAGGTTGTTAAAGGATAGATCCCTGAAATAGTTCAGCTCAAGCTCAATATCACAACAAAAAAAGTTTACAAAAACAATGAAGCAATAAGTAGAAGTTGGCAAGGAGAATTATACAGGAGGACAATGCTGGGAGCAGTGGCTAGTGAATCAGGTATAGATCCAGATAAATTGTTGTGGCTCAATCTCCTGGAGGAATGAGGCAAGCAGAAAAAAAAATCAGGTGGTCCAATTCATGTTCATATCTGTTATGCAACAACAAAATAACAATGCCTTCAAATCAAAAAACATAAGAGTATTTTGAGGCATTCTTAGTATTGTACTACCACCGGTATTATCACTAGTACAAACAATCAGAGCCATTATGCAACAAAATAACAATGCCTTCAAATCAATAGTCATAAGAGTACTTTTACCGTATTCTCTACCAATAGTATTCTACTACCAGTATCATCTCTAGTACAAGCAATCCGAGCCGTTGATTTATACGTTCTACTACCGGTAGAAATAATTATTCTACAATTTCTACCTTTATTCTACAACCAGTAGATCAGGTGATAGTAGAAACAGATATAGTCCATTGGATGAAAAAAAAAACATGGAATGTCTAGATTGATTATACTTCCAGCAGACACCACTATAAAAGTAGTCTAATCATAAATGCTAATCTTACATGAGGAAGATGCCCTTGGAATGTCCCAGTATGCTTGGAATAGTGCCTGTGAAGTGATTATATGCCAGGTCCAGCGTTTGTAGCACCTTCAGCCTGCCTATGGTGTCAGGAATAGGGCCAGAAATTGCATTGTGTTGCAAAAACCTGCACAAAATTCAAACCAAATTCCTCATTTCCTGAGATTATCTGTCTATAACAGTGAAAAAAGCCTTGTCTTGGAATGTCTGGATTCGAAAAGAGACCCATGCTCAGTGAGAATTGATGTTTCACATTTTGTCCAAAATTCTCTTGTTCCAAACAGGGGTAAAACAATCGCATCGATAATTTATACTACTTAAAATATTGGTATTGGTGGTGTTCATTTGCACACCATCCCTACTAGTAACATCTGAGCCCCATAATCTATAATATTACACCACATTTTAATAAGTCCTCCCCTATTTCACTATAGGCTCCCCCAAATTTCAAAATTACTTACTTGTTCAATAAAAAAATCATAGTATTACTTAGACTAAATGAGTGCTTATTAAATGATTTAATAAGCTAGAAATTCAATTTGGGATGAGTTTGTTTCCTAATGTTCCCAACTCCTCCTCTCTCCCGTTTTTCACACGCACGCTTCCCAAACTACTAAATAGTGTGTGTTTTGCAAAAAAAAAATTATAGAAAAGTTGTTTTAAAAATCATATTAATCTACTTTTTTAAAAATAGCTAATACTTAATTAATCATACGCTAATGAGTCGCTCCGTTTTACGTGATCGAGGAAATAGTTCCCAACTACAACCAGCGAACTCAGCCTTGTTTTCCATTGCAAGGCACGGGCTCTAGGCTAGTAATCTAAAGATTATATATACAGGTTAGGGTTTCACATTTTGGAAAGAAGAAATAAATAGAGGGCCTTGAAAAAAATGGGGGTGGGGGGGGGTGCTGGAGGATTCCAAAACTTCAGAAGATCTAACGAATTTTCCAAGAAAAAAAAAAGAAACATGTACATATTTTTGCTGAATTTGAAGAAACTCACACTTAGTTCAAAACAAATTTTATATTTCTGGTGGGAGCCACTTCCTGAATGGATCCACTGTAGATCCAGGCTGTGTTTAGTTTACGTTAAAATTGGAAGTTTGGTTGAAATTGGAACGATGTGATGGAAAAGTTGGAAATTTATGTGTGTAGGAAAGTTTTGACGTAATGGAAAAGTTAGAAGTTTGAAGAAATATTTTGGAACTAAACACGGCGAAAATTCTGTAAACTTTCGGTTGGGAAGAACGAATTCCAGATGAATCAGAACAAAATTAAATTTCCCAAAATTCCCTTGAAATTTCTAGGTCTCAAACGGAACGGGCACCGATCGAGTAAACAGTTAGAGAGAATCAATCCGTACAGGAGTCGCAGCCGCCTGAGTTTCCCGATCGCCGGCGACAGCGTGCCGGACAGATTCCGGTGAGCCAGATCGCTGCAAAACCGAACAAAAAAACGGAGAGAGATCGATCCATCAGTCCGAGCTCCGGCGAACCCGCCATGGCCGGCGGCGACAAGCACAAGCACAGAAGAAAATGGACAACTAGATAGCTAGTCAGCACATACAGCACGGACACATGGCCGGTCTTGGAGCAGGTCACCATGCTCCAGTTGCACGGGCCGCCGCCGCCGCCGCCGCCGGCGACGACCACGCCGCCTGAGCCGGCGTTCCAGTCGGCGAGGACGTTGGCCGTGTCATGCAGCGCCGCCTTGACGGCCAGCAACGCCTCCGCTGCAAGACGCACGCGAATGCAGCAAGAAAAACCGGGTGAGTGAGTGCAGCAAGAACTGAAAATTTTTCAGTTGCAAATTCGCAATATATATATATCAAGAAAAGATTGATATATTTGGAAGAACTTTTATCATCATGATTCAAGCAAGAAAGAATAGCATGAGCTAAGAAACCAATCAAAGATCAAACTAAGATGAGAAGACAAGGCTTGCGATCAAAGAATTTTTTATTTTATTTTCTTTTTTTGCGTGTTCAGCACCTTCACCTTCACCTTCGCCGGCGGCGGCGGCTGGGGAAGAAAGAACATCCGGCGGCGCCGCGGGCGCCACGCCGGCGGCGGCGGAGGAGGCGGACACCACGAGGCTCAGAACCAGCACGGCGAGCAAGGAAGCAGCAGCTCTCCGCTCGTCCATGGCGTCGCGCGCTCGTTCGTCGGCGTCGCGCTCGTTCGTCGGTGACTCGGTGTCGTCGCGTCCAGAGCGCGCTATAGGCTATAGCCCAAAGCGAACCGCTCGTGCGAAGGAGGAGACGAGACGCTCGCGATCGAACACTTCCAAGGCCCCGCGCGCGGCGCGCCCGCTACTGGACGCGACATGAAACGGAAGC
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| CDS seq | ATGGACGAGCGGAGAGCTGCTGCTTCCTTGCTCGCCGTGCTGGTTCTGAGCCTCGTGGTGTCCGCCTCCTCCGCCGCCGCCGGCGTGGCGCCCGCGGCGCCGCCGGATGTTCTTTCTTCCCCAGCCGCCGCCGCCGGCGAAGGTGAAGGTGAAGCGGAGGCGTTGCTGGCCGTCAAGGCGGCGCTGCATGACACGGCCAACGTCCTCGCCGACTGGAACGCCGGCTCAGGCGGCGTGGTCGTCGCCGGCGGCGGCGGCGGCGGCGGCCCGTGCAACTGGAGCATGGTGACCTGCTCCAAGACCGGCCATGTGTCCGTGCTCGATCTGGCTCACCGGAATCTGTCCGGCACGCTGTCGCCGGCGATCGGGAAACTCAGGCGGCTGCGACTCCTGTTTTTGCAACACAATGCAATTTCTGGCCCTATTCCTGACACCATAGGCAGGCTGAAGGTGCTACAAACGCTGGACCTGGCATATAATCACTTCACAGGCACTATTCCAAGCATACTGGGACATTCCAAGGGCATCTTCCTCATGAGATTGAGCCACAACAATTTATCTGGATCTATACCTGATTCACTAGCCACTGCTCCCAGCATTGTCCTCCTGGATCTATCCTTTAACAACCTGAGTGGTCCAGCACCAGTTTTTAGCGCGAATAGTGTATTGTAA
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| Protein seq | MDERRAAASLLAVLVLSLVVSASSAAAGVAPAAPPDVLSSPAAAAGEGEGEAEALLAVKAALHDTANVLADWNAGSGGVVVAGGGGGGGPCNWSMVTCSKTGHVSVLDLAHRNLSGTLSPAIGKLRRLRLLFLQHNAISGPIPDTIGRLKVLQTLDLAYNHFTGTIPSILGHSKGIFLMRLSHNNLSGSIPDSLATAPSIVLLDLSFNNLSGPAPVFSANSVL |
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| Function | Protein NSP-INTERACTING KINASE 1 [UniProtKB/Swiss-Prot:Q9LFS4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0170700 | OsNip_05t0170700-01 | Chr05 | 4236343 | 4240173 | - | RAP2018-11-26 | ||
| CDS seq | ATGGACGAGCGGAGAGCTGCTGCTTCCTTGCTCGCCGTGCTGGTTCTGAGCCTCGTGGTGTCCGCCTCCTCCGCCGCCGCCGGCGTGGCGCCCGCGGCGCCGCCGGATGTTCTTTCTTCCCCAGCCGCCGCCGCCGGCGAAGGTGAAGGTGAAGCGGAGGCGTTGCTGGCCGTCAAGGCGGCGCTGCATGACACGGCCAACGTCCTCGCCGACTGGAACGCCGGCTCAGGCGGCGTGGTCGTCGCCGGCGGCGGCGGCGGCGGCGGCCCGTGCAACTGGAGCATGGTGACCTGCTCCAAGACCGGCCATGTGTCCGTGCTCGATCTGGCTCACCGGAATCTGTCCGGCACGCTGTCGCCGGCGATCGGGAAACTCAGGCGGCTGCGACTCCTGTTTTTGCAACACAATGCAATTTCTGGCCCTATTCCTGACACCATAGGCAGGCTGAAGGTGCTACAAACGCTGGACCTGGCATATAATCACTTCACAGGCACTATTCCAAGCATACTGGGACATTCCAAGGGCATCTTCCTCATGAGATTGAGCCACAACAATTTATCTGGATCTATACCTGATTCACTAGCCACTGCTCCCAGCATTGTCCTCCTGGATCTATCCTTTAACAACCTGAGTGGTCCAGCACCAGTTTTTAGCGCGAATAGTGTATTGTAA
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| Protein seq | MDERRAAASLLAVLVLSLVVSASSAAAGVAPAAPPDVLSSPAAAAGEGEGEAEALLAVKAALHDTANVLADWNAGSGGVVVAGGGGGGGPCNWSMVTCSKTGHVSVLDLAHRNLSGTLSPAIGKLRRLRLLFLQHNAISGPIPDTIGRLKVLQTLDLAYNHFTGTIPSILGHSKGIFLMRLSHNNLSGSIPDSLATAPSIVLLDLSFNNLSGPAPVFSANSVL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0170700 | OsNip_05t0170700-02 | Chr05 | 4236348 | 4240087 | - | IsoSeq | ||
| CDS seq | CGCACGAGCGGTTCGCTTTGGGCTATAGCCTATAGCGCGCTCTGGACGCGACGACACCGAGTCACCGACGAACGAGCGCGACGCCGACGAACGAGCGCGCGACGCCATGGACGAGCGGAGAGCTGCTGCTTCCTTGCTCGCCGTGCTGGTTCTGAGCCTCGTGGTGTCCGCCTCCTCCGCCGCCGCCGGCGTGGCGCCCGCGGCGCCGCCGGATGTTCTTTCTTCCCCAGCCGCCGCCGCCGGCGA
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| Protein seq | RTSGSLWAIAYSALWTRRHRVTDERARRRRTSARRHGRAESCCFLARRAGSEPRGVRLLRRRRRGARGAAGCSFFPSRRRRR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr05 | 4239567 | 4239833 | - | OsNip_05t0170700-01 | OsNip_05t0170700-02,OsNip_05t0170700-01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.733517 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0170300 | SBH | 0.0 | 0.0 | 1.410923 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g07850 | RBH | 0.000000 | 0.0 | 0.080507 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0170700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0004940 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0004970 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0004880 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0004960 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0005030 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0059600 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0004780 | RBH | 0.0 | 0.067382 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0060200 | RBH | 0 | 0 | 0.009657 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0004940 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0004850 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0004940 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0004970 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0005010 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G004880 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0005100 | RBH | 0.144954 | 0.0 | 0.0 |
