Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNip_05g0147133 OGI:05007640 | 16/16 Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) Chr05:2706169-2709396
Gene Symbol -
DNA seq

CTACGTACACTTGGAGACAGGTACAAACCTGCCATGGGATGTGTCTTTCAACCACCTGGTCGAGCGGGTTTGTTTGACACAATCCGAGAAAAGACGATGCCTGCATACACACCAAAAGAAAAATGCTTTGGTCTATATGAAGAACTCATGTTTGAATTGTTTGAAACACAAGTATATCCATGTACTTCCATACAAACCTCTCATACTCCAGCTTCTGAATAACTATGCCGTTTAGTAGAAGCTCTGATTCAAAAACACTGGCACCTGTTGATTCATGATCATTAGCTGGCTGCCCAGAATTCTTTGGTGAAAACAATATGCACACTGGGATGCGAGATTATATCTCATCCTGACCTCTCTTTAAAAGCGGAGAACAAGTTTCGTAGTCATCCTCACATGAGATAACCAGTAGGTCATCTGGTACTTCCTTCGTTATGGACCTTCCGATCCTTTCTAATGGCTGCACAAAATAAAGAGAACATTCATACAAATGCTTATATTGTAAAAGAAGAACGTGTGTGAAATATTAACTAACTTGTTAACTTGCAATTGGGGGCTAGTAATTCATGGGATGAAACATGCAAGTCGCTCAAAAACACATCCAGTTCAGAAGCTATAGATGATTACATTTCTTCACAAATTATTTGAAAGGGTACTAACATGTTCACTTGATTCAGGTAACTATGCCCATACTGTGTTCTGTACCATAGAGAATGATACTTTTAACAGTTAAATGCAAAGGAAAAAACAAAAACGATGGAAAAGAAAAAGGTAACTGAAGATGTCTAAAGATAAAATAGATAAAAAGAAGTGCACACCAGAAGATGTCTAAAATGTTACTAAACATAGCAATAACCTGCCCAGAAGATGCTAACACCAAGCCAATCACCACCTCTCGACTTGGCTTCACGTTCAATGTTACATACACTCGTTTTCCCTGTAATGAGTTTTTCTTTAAATAAATTAAACTGTCTAGGATCGGTGTTAGGCAAAACAAAATTCAAGAATTCATTTTACCAGCAGCAGAGGATGCTTGCAAGCTGCGGCAAGTGATGTAGGCATGCTGAAACCTATCTCCCTTTCCTTTTTGGCATCCCTCAGAATATACTTCTTTTCATCAATGAAACAGCCTGCTTGACCACAATTTTCAAGCCACATCGACGTAACTACTAGTTTGCCAAGAGCTATTGCTTCCAGCATTTTCTTTGTGCGGAAAAAACTATCTGCCACAAAGTGTGTTGCATCCAGAATGGAAAGTGCTTCGGACACTCCCAAGCGCGCCAAGATCTACAGCATAGAAAATTACCATGAGTATACCTAATTTCAAATAACTAATGAATAAAGTTTTAATATTTTAAATGTACCAACAGTAAAGAAATACCATACCTTCTTTTGACGCTTTATCACATCTCCATGCAAATGGTGGCTGAATAAAATACTAAAATTGGTATTTTTTTTCTTTCTTCTAGAATCTTTATGCTGACAATTTGATGGATTGCTATCAGGATCCAACGTCAGCAGTTCTCTGCCAACAGAGGGTTTTGACAAGCTTCTACTTGAAGATTTTGATGGATTTAGAGGACTGAAAATAGGTGACAATTCATTGGCTGATTTTGAAGGCGTTTTCAGCACACTGCTGTGAATGTCAGAGTTGCTTCTTGGTGATTTGCTTGCATCCTCTACATGGGATCCCTTATGTTTATTTCCAGAGCTACTAAAACCAGAAGTTTTGCTATCAGCACTTAGAGAAGAATTAAGTATGTGAGAAGCAGCCGACGACTTTTTGATAATAGTAGACAGCAGAGAGGTTGATCTTCCATTGGAAGGTTCTCTCTTTGCATACTTAACATAGTCAGAGACACTCCTAATGAAGACCCGCCTTTTCTTAGATGGTCTTGGCTCATCTTGAGGTGTTTCATGATTGGTGCCACTTTGGGTAGCTGCAGGATCTTTTGGCTGTACAATTGTTGTTTGTGTTCTTCTCTGTTTGGGAAAGTGAGAAGAGTTCTCTCTGCATGCGTCTTCAATTGTTGGTTTGCTTCTACATGGCTCATAACCCTGTGCAGTATTCTCACTAGCGTGCTGTGAGCTTGCATCCCTACGCAGCTGCAGATTCTGAGCATCAGTTGCACAGGTATGCTCCGTGCTTTCTTTTTCAACATAGATAGAAGTGGATTTTGCAGTTCTTTCACTGATCATTGGCTGCCCGGGTTCATTTGCAATATGATCATTTTGAACTTTTCCAACTTTGGAGACGCCACCTCTCAAATTCATGACTCTCTTTGAGTGCTTATTAGAACATAGCTCGGTATGTTCGCCAGGGTTGTTTCTACAAAAGTGCCTTGTCCGGCGAGCAACAGGTGCACCATGACACTTATCTCCATCACGAGATATCTTCAAAACATTACTCTTAGCTGGTACTGACTTTGCCTCCTTATCTCTTGTCTTTGCTTTAAGATCTCCTGGATTTCCTTGCAGTATTGACCCTTTGTACATTTGTTTCTCAGGTTCAGGGGTCAGCTCAGTTAGTTTTCTTCTTTTCGAACGTGTCGTGACGCCTTCCTGGATGCTGCCAGTTCTCTTCTGAGGGCTGTTCTTTGAATGACCTTTTGCCTTTTTAGACTTTCCATTTCTCAACTGAGGTTTATCTTTAGCTGATAAATTTTTAGCAGGTGAACATTGTGCCAGAGCCTCCATAGCTTCCAGAGCAATTTGAGTATCTGGACCAACATCATGCAAAGCTACACTTTCTTTTTCCTGCTGTACTTCCAAATACTTGCCATTTGATAGATCATCTAAGTCCAAGTCTTTCAAAAGGTTTTTCTTAGTCCTATTTGCAGAAGCCCGCTTACCCTTAACATCGCTGCTGAGCATCAAGTCTGACAAAGGTAAAGCTTCAAACTTCCCAGATAGTTTGGTATTTTTACACTTTTTGCAGTCCCCGATTTCGCCAGGTTCAATTTTTGTGGGGCGCTTCTTTGCTCTGGGAAAATGACTTTTTGATTTCCCTCTATCAGCTGATTTATGCAGCAAAATGTCCTTATTTTTACTGAAAAACTCACCTCCGCCATCATCCTCGCGGCTATCTACCCATGCAAAGATTTCTGCCATTCCATTAGAACTTCTATTACAGTCAACCTTCTCAGCCAACATTAAAGTCCCTCTCTTATTCGACACATGTGGCTTTGCTGAATCCAATTTCTGGGGAGTTGGTTCTTGAGATGACAT

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CDS seq

ATGTCATCTCAAGAACCAACTCCCCAGAAATTGGATTCAGCAAAGCCACATGTGTCGAATAAGAGAGGGACTTTAATGTTGGCTGAGAAGGTTGACTGTAATAGAAGTTCTAATGGAATGGCAGAAATCTTTGCATGGGTAGATAGCCGCGAGGATGATGGCGGAGGTGAGTTTTTCAGTAAAAATAAGGACATTTTGCTGCATAAATCAGCTGATAGAGGGAAATCAAAAAGTCATTTTCCCAGAGCAAAGAAGCGCCCCACAAAAATTGAACCTGGCGAAATCGGGGACTGCAAAAAGTGTAAAAATACCAAACTATCTGGGAAGTTTGAAGCTTTACCTTTGTCAGACTTGATGCTCAGCAGCGATGTTAAGGGTAAGCGGGCTTCTGCAAATAGGACTAAGAAAAACCTTTTGAAAGACTTGGACTTAGATGATCTATCAAATGGCAAGTATTTGGAAGTACAGCAGGAAAAAGAAAGTGTAGCTTTGCATGATGTTGGTCCAGATACTCAAATTGCTCTGGAAGCTATGGAGGCTCTGGCACAATGTTCACCTGCTAAAAATTTATCAGCTAAAGATAAACCTCAGTTGAGAAATGGAAAGTCTAAAAAGGCAAAAGGTCATTCAAAGAACAGCCCTCAGAAGAGAACTGGCAGCATCCAGGAAGGCGTCACGACACGTTCGAAAAGAAGAAAACTAACTGAGCTGACCCCTGAACCTGAGAAACAAATGTACAAAGGGTCAATACTGCAAGGAAATCCAGGAGATCTTAAAGCAAAGACAAGAGATAAGGAGGCAAAGTCAGTACCAGCTAAGAGTAATGTTTTGAAGATATCTCGTGATGGAGATAAGTGTCATGGTGCACCTGTTGCTCGCCGGACAAGGCACTTTTGTAGAAACAACCCTGGCGAACATACCGAGCTATGTTCTAATAAGCACTCAAAGAGAGTCATGAATTTGAGAGGTGGCGTCTCCAAAGTTGGAAAAGTTCAAAATGATCATATTGCAAATGAACCCGGGCAGCCAATGATCAGTGAAAGAACTGCAAAATCCACTTCTATCTATGTTGAAAAAGAAAGCACGGAGCATACCTGTGCAACTGATGCTCAGAATCTGCAGCTGCGTAGGGATGCAAGCTCACAGCACGCTAGTGAGAATACTGCACAGGGTTATGAGCCATGTAGAAGCAAACCAACAATTGAAGACGCATGCAGAGAGAACTCTTCTCACTTTCCCAAACAGAGAAGAACACAAACAACAATTGTACAGCCAAAAGATCCTGCAGCTACCCAAAGTGGCACCAATCATGAAACACCTCAAGATGAGCCAAGACCATCTAAGAAAAGGCGGGTCTTCATTAGGAGTGTCTCTGACTATGTTAAGTATGCAAAGAGAGAACCTTCCAATGGAAGATCAACCTCTCTGCTGTCTACTATTATCAAAAAGTCGTCGGCTGCTTCTCACATACTTAATTCTTCTCTAAGTGCTGATAGCAAAACTTCTGGTTTTAGTAGCTCTGGAAATAAACATAAGGGATCCCATGTAGAGGATGCAAGCAAATCACCAAGAAGCAACTCTGACATTCACAGCAGTGTGCTGAAAACGCCTTCAAAATCAGCCAATGAATTGTCACCTATTTTCAGTCCTCTAAATCCATCAAAATCTTCAAGTAGAAGCTTGTCAAAACCCTCTGTTGGCAGAGAACTGCTGACGTTGGATCCTGATAGCAATCCATCAAATTGTCAGCATAAAGATTCTAGAAGAAAGAAAAAAAATACCAATTTTAGTATTTTATTCAGCCACCATTTGCATGGAGATGTGATAAAGCGTCAAAAGAAGATCTTGGCGCGCTTGGGAGTGTCCGAAGCACTTTCCATTCTGGATGCAACACACTTTGTGGCAGATAGTTTTTTCCGCACAAAGAAAATGCTGGAAGCAATAGCTCTTGGCAAACTAGTAGTTACGTCGATGTGGCTTGAAAATTGTGGTCAAGCAGGCTGTTTCATTGATGAAAAGAAGTATATTCTGAGGGATGCCAAAAAGGAAAGGGAGATAGGTTTCAGCATGCCTACATCACTTGCCGCAGCTTGCAAGCATCCTCTGCTGCTGGGAAAACGAGTGTATGTAACATTGAACGTGAAGCCAAGTCGAGAGGTGGTGATTGGCTTGGTGTTAGCATCTTCTGGGCAGCCATTAGAAAGGATCGGAAGGTCCATAACGAAGGAAGTACCAGATGACCTACTGGTTATCTCATGTGAGGATGACTACGAAACTTGTTCTCCGCTTTTAAAGAGAGGTGCCAGTGTTTTTGAATCAGAGCTTCTACTAAACGGCATAGTTATTCAGAAGCTGGAGTATGAGAGGCATCGTCTTTTCTCGGATTGTGTCAAACAAACCCGCTCGACCAGGTGGTTGAAAGACACATCCCATGGCAGGTTTGTACCTGTCTCCAAGTGTACGTAG

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Protein seq

MSSQEPTPQKLDSAKPHVSNKRGTLMLAEKVDCNRSSNGMAEIFAWVDSREDDGGGEFFSKNKDILLHKSADRGKSKSHFPRAKKRPTKIEPGEIGDCKKCKNTKLSGKFEALPLSDLMLSSDVKGKRASANRTKKNLLKDLDLDDLSNGKYLEVQQEKESVALHDVGPDTQIALEAMEALAQCSPAKNLSAKDKPQLRNGKSKKAKGHSKNSPQKRTGSIQEGVTTRSKRRKLTELTPEPEKQMYKGSILQGNPGDLKAKTRDKEAKSVPAKSNVLKISRDGDKCHGAPVARRTRHFCRNNPGEHTELCSNKHSKRVMNLRGGVSKVGKVQNDHIANEPGQPMISERTAKSTSIYVEKESTEHTCATDAQNLQLRRDASSQHASENTAQGYEPCRSKPTIEDACRENSSHFPKQRRTQTTIVQPKDPAATQSGTNHETPQDEPRPSKKRRVFIRSVSDYVKYAKREPSNGRSTSLLSTIIKKSSAASHILNSSLSADSKTSGFSSSGNKHKGSHVEDASKSPRSNSDIHSSVLKTPSKSANELSPIFSPLNPSKSSSRSLSKPSVGRELLTLDPDSNPSNCQHKDSRRKKKNTNFSILFSHHLHGDVIKRQKKILARLGVSEALSILDATHFVADSFFRTKKMLEAIALGKLVVTSMWLENCGQAGCFIDEKKYILRDAKKEREIGFSMPTSLAAACKHPLLLGKRVYVTLNVKPSREVVIGLVLASSGQPLERIGRSITKEVPDDLLVISCEDDYETCSPLLKRGASVFESELLLNGIVIQKLEYERHRLFSDCVKQTRSTRWLKDTSHGRFVPVSKCT

Function PAX-interacting protein 1 [UniProtKB/Swiss-Prot:Q6ZW49]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNip_05g0147133 OsNip_05t0147133-00 Chr05 2706169 2709396 - RAP2018-11-26
CDS seq

ATGTCATCTCAAGAACCAACTCCCCAGAAATTGGATTCAGCAAAGCCACATGTGTCGAATAAGAGAGGGACTTTAATGTTGGCTGAGAAGGTTGACTGTAATAGAAGTTCTAATGGAATGGCAGAAATCTTTGCATGGGTAGATAGCCGCGAGGATGATGGCGGAGGTGAGTTTTTCAGTAAAAATAAGGACATTTTGCTGCATAAATCAGCTGATAGAGGGAAATCAAAAAGTCATTTTCCCAGAGCAAAGAAGCGCCCCACAAAAATTGAACCTGGCGAAATCGGGGACTGCAAAAAGTGTAAAAATACCAAACTATCTGGGAAGTTTGAAGCTTTACCTTTGTCAGACTTGATGCTCAGCAGCGATGTTAAGGGTAAGCGGGCTTCTGCAAATAGGACTAAGAAAAACCTTTTGAAAGACTTGGACTTAGATGATCTATCAAATGGCAAGTATTTGGAAGTACAGCAGGAAAAAGAAAGTGTAGCTTTGCATGATGTTGGTCCAGATACTCAAATTGCTCTGGAAGCTATGGAGGCTCTGGCACAATGTTCACCTGCTAAAAATTTATCAGCTAAAGATAAACCTCAGTTGAGAAATGGAAAGTCTAAAAAGGCAAAAGGTCATTCAAAGAACAGCCCTCAGAAGAGAACTGGCAGCATCCAGGAAGGCGTCACGACACGTTCGAAAAGAAGAAAACTAACTGAGCTGACCCCTGAACCTGAGAAACAAATGTACAAAGGGTCAATACTGCAAGGAAATCCAGGAGATCTTAAAGCAAAGACAAGAGATAAGGAGGCAAAGTCAGTACCAGCTAAGAGTAATGTTTTGAAGATATCTCGTGATGGAGATAAGTGTCATGGTGCACCTGTTGCTCGCCGGACAAGGCACTTTTGTAGAAACAACCCTGGCGAACATACCGAGCTATGTTCTAATAAGCACTCAAAGAGAGTCATGAATTTGAGAGGTGGCGTCTCCAAAGTTGGAAAAGTTCAAAATGATCATATTGCAAATGAACCCGGGCAGCCAATGATCAGTGAAAGAACTGCAAAATCCACTTCTATCTATGTTGAAAAAGAAAGCACGGAGCATACCTGTGCAACTGATGCTCAGAATCTGCAGCTGCGTAGGGATGCAAGCTCACAGCACGCTAGTGAGAATACTGCACAGGGTTATGAGCCATGTAGAAGCAAACCAACAATTGAAGACGCATGCAGAGAGAACTCTTCTCACTTTCCCAAACAGAGAAGAACACAAACAACAATTGTACAGCCAAAAGATCCTGCAGCTACCCAAAGTGGCACCAATCATGAAACACCTCAAGATGAGCCAAGACCATCTAAGAAAAGGCGGGTCTTCATTAGGAGTGTCTCTGACTATGTTAAGTATGCAAAGAGAGAACCTTCCAATGGAAGATCAACCTCTCTGCTGTCTACTATTATCAAAAAGTCGTCGGCTGCTTCTCACATACTTAATTCTTCTCTAAGTGCTGATAGCAAAACTTCTGGTTTTAGTAGCTCTGGAAATAAACATAAGGGATCCCATGTAGAGGATGCAAGCAAATCACCAAGAAGCAACTCTGACATTCACAGCAGTGTGCTGAAAACGCCTTCAAAATCAGCCAATGAATTGTCACCTATTTTCAGTCCTCTAAATCCATCAAAATCTTCAAGTAGAAGCTTGTCAAAACCCTCTGTTGGCAGAGAACTGCTGACGTTGGATCCTGATAGCAATCCATCAAATTGTCAGCATAAAGATTCTAGAAGAAAGAAAAAAAATACCAATTTTAGTATTTTATTCAGCCACCATTTGCATGGAGATGTGATAAAGCGTCAAAAGAAGATCTTGGCGCGCTTGGGAGTGTCCGAAGCACTTTCCATTCTGGATGCAACACACTTTGTGGCAGATAGTTTTTTCCGCACAAAGAAAATGCTGGAAGCAATAGCTCTTGGCAAACTAGTAGTTACGTCGATGTGGCTTGAAAATTGTGGTCAAGCAGGCTGTTTCATTGATGAAAAGAAGTATATTCTGAGGGATGCCAAAAAGGAAAGGGAGATAGGTTTCAGCATGCCTACATCACTTGCCGCAGCTTGCAAGCATCCTCTGCTGCTGGGAAAACGAGTGTATGTAACATTGAACGTGAAGCCAAGTCGAGAGGTGGTGATTGGCTTGGTGTTAGCATCTTCTGGGCAGCCATTAGAAAGGATCGGAAGGTCCATAACGAAGGAAGTACCAGATGACCTACTGGTTATCTCATGTGAGGATGACTACGAAACTTGTTCTCCGCTTTTAAAGAGAGGTGCCAGTGTTTTTGAATCAGAGCTTCTACTAAACGGCATAGTTATTCAGAAGCTGGAGTATGAGAGGCATCGTCTTTTCTCGGATTGTGTCAAACAAACCCGCTCGACCAGGTGGTTGAAAGACACATCCCATGGCAGGTTTGTACCTGTCTCCAAGTGTACGTAG

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Protein seq

MSSQEPTPQKLDSAKPHVSNKRGTLMLAEKVDCNRSSNGMAEIFAWVDSREDDGGGEFFSKNKDILLHKSADRGKSKSHFPRAKKRPTKIEPGEIGDCKKCKNTKLSGKFEALPLSDLMLSSDVKGKRASANRTKKNLLKDLDLDDLSNGKYLEVQQEKESVALHDVGPDTQIALEAMEALAQCSPAKNLSAKDKPQLRNGKSKKAKGHSKNSPQKRTGSIQEGVTTRSKRRKLTELTPEPEKQMYKGSILQGNPGDLKAKTRDKEAKSVPAKSNVLKISRDGDKCHGAPVARRTRHFCRNNPGEHTELCSNKHSKRVMNLRGGVSKVGKVQNDHIANEPGQPMISERTAKSTSIYVEKESTEHTCATDAQNLQLRRDASSQHASENTAQGYEPCRSKPTIEDACRENSSHFPKQRRTQTTIVQPKDPAATQSGTNHETPQDEPRPSKKRRVFIRSVSDYVKYAKREPSNGRSTSLLSTIIKKSSAASHILNSSLSADSKTSGFSSSGNKHKGSHVEDASKSPRSNSDIHSSVLKTPSKSANELSPIFSPLNPSKSSSRSLSKPSVGRELLTLDPDSNPSNCQHKDSRRKKKNTNFSILFSHHLHGDVIKRQKKILARLGVSEALSILDATHFVADSFFRTKKMLEAIALGKLVVTSMWLENCGQAGCFIDEKKYILRDAKKEREIGFSMPTSLAAACKHPLLLGKRVYVTLNVKPSREVVIGLVLASSGQPLERIGRSITKEVPDDLLVISCEDDYETCSPLLKRGASVFESELLLNGIVIQKLEYERHRLFSDCVKQTRSTRWLKDTSHGRFVPVSKCT

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.299323 0.101531 0.849292

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) NA NA NA NA NA
Nipponbare | IRGSP 1.0 | MSU LOC_Os05g05440 RBH 0.538207 0.503320 0.506854
Nipponbare | IRGSP 1.0 | RAP-db Os05g0147133 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_05g0003260 RBH 0.302942 11.705957 4.855637
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_05g0003320 RBH 0.745198 3.255596 3.400922
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_05g0003270 RBH 2.404997 7.180542 9.158979
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_05g0003330 RBH 0.016955 0.034875 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_05g0003390 RBH 0.337452 3.716137 8.604010
Minghui 63 | MH63RS3 | HZAU OsMH63_05G0039200 RBH 0.3939715 1.252866 0.9707705
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_05g0003170 RBH 0.076623 0.462887 2.218844
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_05G0040600 RBH 0.5666745 0.801366 4.9826955
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_05g0003290 SBH 0.0 0.074001 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_05g0003210 RBH 0.298790 13.640708 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_05g0003320 RBH 1.509657 0.000000 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_05g0003340 RBH 0.417668 0.704390 1.615439
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_05g0003390 RBH 0.105728 0.890604 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_05G003210 RBH 0.490714 0.664962 2.322860
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_05g0003410 RBH 0.583593 0.815062 10.969827
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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