Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_05g0135400 | OGI:05005940 | 11/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr05:2073613-2075302 | ||||||||
| Gene Symbol | prx70 | ||||||||||
| DNA seq | ATCTCAAAATCAATCTAAATCCATCCATCGATCTCTCAATTAATTAACCTCAAGAGAGAAGTAATTAATTGAGCTAGCTAGCTAGATAGTGAGATAAATAGTGATCAATAGCTAAGCTAGCTAGCTTCGATCGATTGATCATGATGAGGTCGCCGTGGATGGTGTTTGCATGGGCGGCGGCGATGGTGGCCGTGGCGGCGGCGTCGCCGGTGCCGACGAAGCTGAAGGTGGGGTTCTACGAGCACAGTTGCCCGCAGGCGGAGGAGATCGTCCGCAACGCCGTCCGCCGCGCCGTCGCCCGTGACCCCGGCCTCGCCGCCGGCCTCATCCGCATGCATTTCCACGACTGCTTCGTCAGAGTAAGTACACATATATCACGTGCCATTCTTGAAGAAGCTGTCAATGGCGTGTAATTAATTAAGGCCTCTAATTAGTCATGATTAGATGATACTTTCTCTGTTTTAGTCAAACTAATTTATAGAAAAATAGAACAACATCTACAGCACCAAATTAGTTTCACTATATATGTAACGTTGAATACATTTTTGATAATATCATTGTGTCGTGTTGAAAGTTTTATTATATTTTTCTGTAAATTTGATTAAATTAAAAATTAATTTTTGACTATGGAAAAAATTAAAAACGACTCATATTATAAAGAGGGACGAAATTAAACTAATTGTGCTGAATTTAATTGATTATTTCAGGGGTGTGACGGGTCGATACTGATAAACTCGACGCCGGGACACGTGGCGGAGAAGGATTCGGTGGCGAACAACCCTAGCATGCGAGGGTTCGAGGTGGTGGACGACGCCAAGGCCATCGTCGAGGCGCACTGCCCGCGCACCGTCTCCTGCGCCGACATCCTCGCCTTCGCCGCCCGCGACTCCGCCCACCTCGCCGGCGCCACCGTCGACTACCCGGTCCCCTCCGGCCGCCGCGACGGCCGCGTCTCCGTCTCCGACGAGGTGCTCGCCGACAACGTCCCCGCCCCGACCTTCAGCCTCGCCCAGCTCGTCGCCAGCTTCGAGCGCAAGGGCCTCACCGCCGACGACATGGTCACCCTCTCCGGCGCCCACACCATCGGCCGCTCCCACTGCTCCTCCTTCACCGCCCGCCTCTACAACTTCAGCGGCGAGGCCGGCAGGACGGACCCGGCCATCGACCCGGCGTACGCGGCGGAGCTCAAGCGCCGGTGCCCGCCAGCGACCGACGACCAGATGGACCCCACCACCGTGCCGCTCGACCCGGTGACGCCGGCGAGCTTTGACAACCAGTACTACAAGAACGTGCTCAAGCACAGGGTGGTGCTCAACTCCGACCAGGCGCTGCTCGACAGCCCGTGGACCGCCGGCGTCGTCAAGCTCCACTCCGCCGTCGAGAAGGTGTTCCAGGTCAAGTTCGCCGCCGCCATGGTGAAGATGGGCAACATCGACGTGCTCACGGGTGACGAGGGAGAGATCAGAGAGAAGTGCTTCATGGTCAACAACCACTACTAGTTGTCAATCAATAATTAAGCTTATATTATAGTATATATATAATTTCATCTGCAGCTGGTTTATACATGTAGAATTAGTAATATTACACGCCCAAATTTCATCATGTGGAAATTTTTTTGTTGTTGTTTTGTGTGGCAAATTGTGATTAAGAAAAGATTCTATTGTTAACTCAAACAAGAGAAGATTTTCTT
More
|
||||||||||
| CDS seq | ATGATGAGGTCGCCGTGGATGGTGTTTGCATGGGCGGCGGCGATGGTGGCCGTGGCGGCGGCGTCGCCGGTGCCGACGAAGCTGAAGGTGGGGTTCTACGAGCACAGTTGCCCGCAGGCGGAGGAGATCGTCCGCAACGCCGTCCGCCGCGCCGTCGCCCGTGACCCCGGCCTCGCCGCCGGCCTCATCCGCATGCATTTCCACGACTGCTTCGTCAGAGGGTGTGACGGGTCGATACTGATAAACTCGACGCCGGCGAGCTTTGACAACCAGTACTACAAGAACGTGCTCAAGCACAGGGTGGTGCTCAACTCCGACCAGGCGCTGCTCGACAGCCCGTGGACCGCCGGCGTCGTCAAGCTCCACTCCGCCGTCGAGAAGGTGTTCCAGGTCAAGTTCGCCGCCGCCATGGTGAAGATGGGCAACATCGACGTGCTCACGGGTGACGAGGGAGAGATCAGAGAGAAGTGCTTCATGGTCAACAACCACTACTAG
More
|
||||||||||
| Protein seq | MMRSPWMVFAWAAAMVAVAAASPVPTKLKVGFYEHSCPQAEEIVRNAVRRAVARDPGLAAGLIRMHFHDCFVRGCDGSILINSTPASFDNQYYKNVLKHRVVLNSDQALLDSPWTAGVVKLHSAVEKVFQVKFAAAMVKMGNIDVLTGDEGEIREKCFMVNNHY |
||||||||||
| Function | Peroxidase 5 [UniProtKB/Swiss-Prot:A7QEU4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0135400 | OsNip_05t0135400-01 | Chr05 | 2073613 | 2075302 | + | RAP2018-11-26 | ||
| CDS seq | ATGATGAGGTCGCCGTGGATGGTGTTTGCATGGGCGGCGGCGATGGTGGCCGTGGCGGCGGCGTCGCCGGTGCCGACGAAGCTGAAGGTGGGGTTCTACGAGCACAGTTGCCCGCAGGCGGAGGAGATCGTCCGCAACGCCGTCCGCCGCGCCGTCGCCCGTGACCCCGGCCTCGCCGCCGGCCTCATCCGCATGCATTTCCACGACTGCTTCGTCAGAGGGTGTGACGGGTCGATACTGATAAACTCGACGCCGGCGAGCTTTGACAACCAGTACTACAAGAACGTGCTCAAGCACAGGGTGGTGCTCAACTCCGACCAGGCGCTGCTCGACAGCCCGTGGACCGCCGGCGTCGTCAAGCTCCACTCCGCCGTCGAGAAGGTGTTCCAGGTCAAGTTCGCCGCCGCCATGGTGAAGATGGGCAACATCGACGTGCTCACGGGTGACGAGGGAGAGATCAGAGAGAAGTGCTTCATGGTCAACAACCACTACTAG
More
|
|||||||
| Protein seq | MMRSPWMVFAWAAAMVAVAAASPVPTKLKVGFYEHSCPQAEEIVRNAVRRAVARDPGLAAGLIRMHFHDCFVRGCDGSILINSTPASFDNQYYKNVLKHRVVLNSDQALLDSPWTAGVVKLHSAVEKVFQVKFAAAMVKMGNIDVLTGDEGEIREKCFMVNNHY |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0293900 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g04490 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0135400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0002550 | RBH | 0.0 | 26.967319 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0002580 | RBH | 0.0 | 5.234052 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0002580 | RBH | 0.000000 | 28.085850 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0002500 | SBH | 0.0 | 0.646670 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0002610 | SBH | 0.000000 | 32.967018 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0030800 | RBH | 0.1384085 | 35.057227 | 0.0709745 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0022010 | SBH | 0.000000 | 5.265853 | 0.472647 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0030800 | RBH | 0.3328385 | 39.056498 | 0.050938 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0002530 | RBH | 0.0 | 0.740472 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0002450 | RBH | 0.0 | 17.654415 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0002560 | RBH | 0.0 | 80.981285 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0002600 | SBH | 2.021781 | 8.018285 | 6.478323 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0002620 | RBH | 0.000000 | 4.254147 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G002420 | SBH | 0.000000 | 7.565678 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0002650 | SBH | 0.342891 | 29.321560 | 10.782074 |
