Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_05g0128200 | OGI:05004830 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr05:1662022-1664213 | ||||||||
| Gene Symbol | C3H33, OsC3H33, OsTZF5, TZF5, OsCCCH-Zn-5, CCCH-Zn-5 | ||||||||||
| DNA seq | CTCTCCAACCACACCACTCTCCAAATCCATCCATCGATCGAGAATTCCTCTTCTCCCTCTTCTTGTTCTTCTTCTCCTCTCTGAATTTAACAAGAAATCAAGAACTAGGTGTTTGTTTTGACTAACAAGAACTCGGTCGAACACTCTGCGTGCGTGTTTGTTTGTGTGTGTCATGTGCTCTGGGCCGCGCAAGCCGTCCACACCGCCGCTGCCGCAGCAGCAGAAGGAGGCGACGGTGATGGCGGCGTCCTTGCTTCTTGAGCTGGCGGCAGCGGACGACGTGGCGGCGGTGAGGAGGGTCGTGGAGGAGGAGAAGGTGTCTCTTGGCGTGGCTGGGTTGTGGTATGGGCCTTCGGCGAGCGGCGTGGCGAGGCTCGGGATGGAGCGGAGGACGGCGGCGATGGTGGCGGCGCTGTACGGGAGCACGGGGGTGCTTGGGTATGTCGTGGCGGCAGCGCCGGCGGAGGCCGCGCGCGCGTCGGAGACGGATGGGGCCACGCCGCTGCACATGGCGGCTGCCGGTGGCGCGGCGAACGCGGTCGCGGCCACGCGCCTGTTGCTCGCCGCGGGGGCGTCGGTCGACGCGCTCTCGGCTTCGGGGCTCCGCGCCGGTGACCTCCTCCCGCGCGCCACCGCGGCGGAGAAGGCCATCCGGCTGCTGCTCAAGTCGCCGGCCGTGTCGCCGTCGTCGTCGCCGAAGAAGTCGGCCTCGCCGCCGTCGCCGCCGCCGCCGCAGGAGGCGAAGAAGGAGTACCCGCCTGACCTGACGCTGCCCGACCTCAAGAGCGGACTGTTCAGCACCGACGAGTTCCGCATGTACAGCTTCAAGGTGAAGCCGTGCTCCCGCGCCTACTCCCATGACTGGACCGAGTGCCCCTTCGTCCACCCCGGCGAGAACGCGCGCCGCCGCGACCCTCGCCGCTACTCCTACAGCTGCGTGCCTTGCCCGGAGTTCCGCAAGGGCGGCTCGTGCCGCAAGGGCGACGCGTGCGAGTACGCCCATGGCGTGTTCGAGTGCTGGCTCCACCCGGCGCAGTACAGGACGCGCCTCTGCAAGGACGAGGTCGGCTGCGCGCGCCGCATCTGCTTCTTCGCCCACAAGCCCGACGAGCTCCGCGCCGTCAACCCCTCCGCCGTGTCCGTCGGCATGCAGCCCACCGTATCGTCGCCGCGCTCCTCGCCGCCCAACGGGCTCGACATGGCGGCGGCGGCGGCGGCGATGATGAGCCCCGCCTGGCCGTCGTCCCCAGCGAGCCGCCTCAAGACGGCGCTCGGCGCGCGGGAGCTCGACTTCGACCTCGAGATGCTCGCGCTGGACCAGTACCAGCAGAAGCTGTTCGACAAGGTGTCCGGCGCGCCGTCGCCGAGGGCGAGCTGGGGCGCCGCGGCGAACGGCCTCGCCACCGCGTCGCCGGCGAGGGCCGTGCCGGACTACACCGACCTGCTCGGCTCCGTCGACCCGGCCATGCTGTCCCAGCTCCACGCGCTGTCCCTCAAGCAGGCCGGCGACATGCCCGCGTACAGCTCCATGGCGGACACCACGCAGATGCACATGCCGACCTCGCCGATGGTGGGCGGCGCGAACACCGCGTTCGGGCTGGACCACTCCATGGCGAAGGCGATCATGAGCTCCCGCGCCTCGGCGTTCGCCAAGCGCAGCCAGAGCTTCATCGACCGCGGAGGCCGCGCCCCGGCGGCGCGTTCGCTCATGTCGCCGGCGACGACCGGCGCGCCGTCCATTCTCTCGGACTGGGGCTCGCCGGACGGCAAGCTGGACTGGGGCGTCCAGGGCGACGAGCTGCACAAGCTCCGCAAGTCGGCGTCGTTCGCGTTCCGCGGCCAATCCGCCATGCCGGTGGCGACGCACGCCGCGGCGGCGGAGCCGGACGTGTCATGGGTGAACTCTCTTGTCAAGGACGGCCACGCCGCCGGCGACATATTCGCGCAGTGGCCGGAGCAGGAGCAGATGGTGGCATGATCATCAGAGGCTCATAGCAACCTAGCTAACCAAAAAAAAAGAAGTTCTTTCTTTCAATTAATTTTTCCCCTTCGTTTGCTTAATTTGATTCAAATGAGATGGTTTTTTAGTACATATTTAAGCTGTTCGCAAATAATATTGTTCATCAACAAAGAAGCATGTATACCCAAAGGGAGCTCTAGATTGATGAAGAACAGCTGATATTTACTCTATT
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| CDS seq | ATGTGCTCTGGGCCGCGCAAGCCGTCCACACCGCCGCTGCCGCAGCAGCAGAAGGAGGCGACGGTGATGGCGGCGTCCTTGCTTCTTGAGCTGGCGGCAGCGGACGACGTGGCGGCGGTGAGGAGGGTCGTGGAGGAGGAGAAGGTGTCTCTTGGCGTGGCTGGGTTGTGGTATGGGCCTTCGGCGAGCGGCGTGGCGAGGCTCGGGATGGAGCGGAGGACGGCGGCGATGGTGGCGGCGCTGTACGGGAGCACGGGGGTGCTTGGGTATGTCGTGGCGGCAGCGCCGGCGGAGGCCGCGCGCGCGTCGGAGACGGATGGGGCCACGCCGCTGCACATGGCGGCTGCCGGTGGCGCGGCGAACGCGGTCGCGGCCACGCGCCTGTTGCTCGCCGCGGGGGCGTCGGTCGACGCGCTCTCGGCTTCGGGGCTCCGCGCCGGTGACCTCCTCCCGCGCGCCACCGCGGCGGAGAAGGCCATCCGGCTGCTGCTCAAGTCGCCGGCCGTGTCGCCGTCGTCGTCGCCGAAGAAGTCGGCCTCGCCGCCGTCGCCGCCGCCGCCGCAGGAGGCGAAGAAGGAGTACCCGCCTGACCTGACGCTGCCCGACCTCAAGAGCGGACTGTTCAGCACCGACGAGTTCCGCATGTACAGCTTCAAGGTGAAGCCGTGCTCCCGCGCCTACTCCCATGACTGGACCGAGTGCCCCTTCGTCCACCCCGGCGAGAACGCGCGCCGCCGCGACCCTCGCCGCTACTCCTACAGCTGCGTGCCTTGCCCGGAGTTCCGCAAGGGCGGCTCGTGCCGCAAGGGCGACGCGTGCGAGTACGCCCATGGCGTGTTCGAGTGCTGGCTCCACCCGGCGCAGTACAGGACGCGCCTCTGCAAGGACGAGGTCGGCTGCGCGCGCCGCATCTGCTTCTTCGCCCACAAGCCCGACGAGCTCCGCGCCGTCAACCCCTCCGCCGTGTCCGTCGGCATGCAGCCCACCGTATCGTCGCCGCGCTCCTCGCCGCCCAACGGGCTCGACATGGCGGCGGCGGCGGCGGCGATGATGAGCCCCGCCTGGCCGTCGTCCCCAGCGAGCCGCCTCAAGACGGCGCTCGGCGCGCGGGAGCTCGACTTCGACCTCGAGATGCTCGCGCTGGACCAGTACCAGCAGAAGCTGTTCGACAAGGTGTCCGGCGCGCCGTCGCCGAGGGCGAGCTGGGGCGCCGCGGCGAACGGCCTCGCCACCGCGTCGCCGGCGAGGGCCGTGCCGGACTACACCGACCTGCTCGGCTCCGTCGACCCGGCCATGCTGTCCCAGCTCCACGCGCTGTCCCTCAAGCAGGCCGGCGACATGCCCGCGTACAGCTCCATGGCGGACACCACGCAGATGCACATGCCGACCTCGCCGATGGTGGGCGGCGCGAACACCGCGTTCGGGCTGGACCACTCCATGGCGAAGGCGATCATGAGCTCCCGCGCCTCGGCGTTCGCCAAGCGCAGCCAGAGCTTCATCGACCGCGGAGGCCGCGCCCCGGCGGCGCGTTCGCTCATGTCGCCGGCGACGACCGGCGCGCCGTCCATTCTCTCGGACTGGGGCTCGCCGGACGGCAAGCTGGACTGGGGCGTCCAGGGCGACGAGCTGCACAAGCTCCGCAAGTCGGCGTCGTTCGCGTTCCGCGGCCAATCCGCCATGCCGGTGGCGACGCACGCCGCGGCGGCGGAGCCGGACGTGTCATGGGTGAACTCTCTTGTCAAGGACGGCCACGCCGCCGGCGACATATTCGCGCAGTGGCCGGAGCAGGAGCAGATGGTGGCATGA
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| Protein seq | MCSGPRKPSTPPLPQQQKEATVMAASLLLELAAADDVAAVRRVVEEEKVSLGVAGLWYGPSASGVARLGMERRTAAMVAALYGSTGVLGYVVAAAPAEAARASETDGATPLHMAAAGGAANAVAATRLLLAAGASVDALSASGLRAGDLLPRATAAEKAIRLLLKSPAVSPSSSPKKSASPPSPPPPQEAKKEYPPDLTLPDLKSGLFSTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRRYSYSCVPCPEFRKGGSCRKGDACEYAHGVFECWLHPAQYRTRLCKDEVGCARRICFFAHKPDELRAVNPSAVSVGMQPTVSSPRSSPPNGLDMAAAAAAMMSPAWPSSPASRLKTALGARELDFDLEMLALDQYQQKLFDKVSGAPSPRASWGAAANGLATASPARAVPDYTDLLGSVDPAMLSQLHALSLKQAGDMPAYSSMADTTQMHMPTSPMVGGANTAFGLDHSMAKAIMSSRASAFAKRSQSFIDRGGRAPAARSLMSPATTGAPSILSDWGSPDGKLDWGVQGDELHKLRKSASFAFRGQSAMPVATHAAAAEPDVSWVNSLVKDGHAAGDIFAQWPEQEQMVA |
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| Function | Zinc finger CCCH domain-containing protein 33 [UniProtKB/Swiss-Prot:Q688R3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0128200 | OsNip_05t0128200-01 | Chr05 | 1662022 | 1664058 | + | RAP2018-11-26 | ||
| CDS seq | ATGTGCTCTGGGCCGCGCAAGCCGTCCACACCGCCGCTGCCGCAGCAGCAGAAGGAGGCGACGGTGATGGCGGCGTCCTTGCTTCTTGAGCTGGCGGCAGCGGACGACGTGGCGGCGGTGAGGAGGGTCGTGGAGGAGGAGAAGGTGTCTCTTGGCGTGGCTGGGTTGTGGTATGGGCCTTCGGCGAGCGGCGTGGCGAGGCTCGGGATGGAGCGGAGGACGGCGGCGATGGTGGCGGCGCTGTACGGGAGCACGGGGGTGCTTGGGTATGTCGTGGCGGCAGCGCCGGCGGAGGCCGCGCGCGCGTCGGAGACGGATGGGGCCACGCCGCTGCACATGGCGGCTGCCGGTGGCGCGGCGAACGCGGTCGCGGCCACGCGCCTGTTGCTCGCCGCGGGGGCGTCGGTCGACGCGCTCTCGGCTTCGGGGCTCCGCGCCGGTGACCTCCTCCCGCGCGCCACCGCGGCGGAGAAGGCCATCCGGCTGCTGCTCAAGTCGCCGGCCGTGTCGCCGTCGTCGTCGCCGAAGAAGTCGGCCTCGCCGCCGTCGCCGCCGCCGCCGCAGGAGGCGAAGAAGGAGTACCCGCCTGACCTGACGCTGCCCGACCTCAAGAGCGGACTGTTCAGCACCGACGAGTTCCGCATGTACAGCTTCAAGGTGAAGCCGTGCTCCCGCGCCTACTCCCATGACTGGACCGAGTGCCCCTTCGTCCACCCCGGCGAGAACGCGCGCCGCCGCGACCCTCGCCGCTACTCCTACAGCTGCGTGCCTTGCCCGGAGTTCCGCAAGGGCGGCTCGTGCCGCAAGGGCGACGCGTGCGAGTACGCCCATGGCGTGTTCGAGTGCTGGCTCCACCCGGCGCAGTACAGGACGCGCCTCTGCAAGGACGAGGTCGGCTGCGCGCGCCGCATCTGCTTCTTCGCCCACAAGCCCGACGAGCTCCGCGCCGTCAACCCCTCCGCCGTGTCCGTCGGCATGCAGCCCACCGTATCGTCGCCGCGCTCCTCGCCGCCCAACGGGCTCGACATGGCGGCGGCGGCGGCGGCGATGATGAGCCCCGCCTGGCCGTCGTCCCCAGCGAGCCGCCTCAAGACGGCGCTCGGCGCGCGGGAGCTCGACTTCGACCTCGAGATGCTCGCGCTGGACCAGTACCAGCAGAAGCTGTTCGACAAGGTGTCCGGCGCGCCGTCGCCGAGGGCGAGCTGGGGCGCCGCGGCGAACGGCCTCGCCACCGCGTCGCCGGCGAGGGCCGTGCCGGACTACACCGACCTGCTCGGCTCCGTCGACCCGGCCATGCTGTCCCAGCTCCACGCGCTGTCCCTCAAGCAGGCCGGCGACATGCCCGCGTACAGCTCCATGGCGGACACCACGCAGATGCACATGCCGACCTCGCCGATGGTGGGCGGCGCGAACACCGCGTTCGGGCTGGACCACTCCATGGCGAAGGCGATCATGAGCTCCCGCGCCTCGGCGTTCGCCAAGCGCAGCCAGAGCTTCATCGACCGCGGAGGCCGCGCCCCGGCGGCGCGTTCGCTCATGTCGCCGGCGACGACCGGCGCGCCGTCCATTCTCTCGGACTGGGGCTCGCCGGACGGCAAGCTGGACTGGGGCGTCCAGGGCGACGAGCTGCACAAGCTCCGCAAGTCGGCGTCGTTCGCGTTCCGCGGCCAATCCGCCATGCCGGTGGCGACGCACGCCGCGGCGGCGGAGCCGGACGTGTCATGGGTGAACTCTCTTGTCAAGGACGGCCACGCCGCCGGCGACATATTCGCGCAGTGGCCGGAGCAGGAGCAGATGGTGGCATGA
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| Protein seq | MCSGPRKPSTPPLPQQQKEATVMAASLLLELAAADDVAAVRRVVEEEKVSLGVAGLWYGPSASGVARLGMERRTAAMVAALYGSTGVLGYVVAAAPAEAARASETDGATPLHMAAAGGAANAVAATRLLLAAGASVDALSASGLRAGDLLPRATAAEKAIRLLLKSPAVSPSSSPKKSASPPSPPPPQEAKKEYPPDLTLPDLKSGLFSTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRRYSYSCVPCPEFRKGGSCRKGDACEYAHGVFECWLHPAQYRTRLCKDEVGCARRICFFAHKPDELRAVNPSAVSVGMQPTVSSPRSSPPNGLDMAAAAAAMMSPAWPSSPASRLKTALGARELDFDLEMLALDQYQQKLFDKVSGAPSPRASWGAAANGLATASPARAVPDYTDLLGSVDPAMLSQLHALSLKQAGDMPAYSSMADTTQMHMPTSPMVGGANTAFGLDHSMAKAIMSSRASAFAKRSQSFIDRGGRAPAARSLMSPATTGAPSILSDWGSPDGKLDWGVQGDELHKLRKSASFAFRGQSAMPVATHAAAAEPDVSWVNSLVKDGHAAGDIFAQWPEQEQMVA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0128200 | OsNip_05t0128200-02 | Chr05 | 1662027 | 1664213 | + | RAP2018-11-26 | ||
| CDS seq | ATGTGCTCTGGGCCGCGCAAGCCGTCCACACCGCCGCTGCCGCAGCAGCAGAAGGAGGCGACGGTGATGGCGGCGTCCTTGCTTCTTGAGCTGGCGGCAGCGGACGACGTGGCGGCGGTGAGGAGGGTCGTGGAGGAGGAGAAGGTGTCTCTTGGCGTGGCTGGGTTGTGGTATGGGCCTTCGGCGAGCGGCGTGGCGAGGCTCGGGATGGAGCGGAGGACGGCGGCGATGGTGGCGGCGCTGTACGGGAGCACGGGGGTGCTTGGGTATGTCGTGGCGGCAGCGCCGGCGGAGGCCGCGCGCGCGTCGGAGACGGATGGGGCCACGCCGCTGCACATGGCGGCTGCCGGTGGCGCGGCGAACGCGGTCGCGGCCACGCGCCTGTTGCTCGCCGCGGGGGCGTCGGTCGACGCGCTCTCGGCTTCGGGGCTCCGCGCCGGTGACCTCCTCCCGCGCGCCACCGCGGCGGAGAAGGCCATCCGGCTGCTGCTCAAGTCGCCGGCCGTGTCGCCGTCGTCGTCGCCGAAGAAGTCGGCCTCGCCGCCGTCGCCGCCGCCGCCGCAGGAGGCGAAGAAGGAGTACCCGCCTGACCTGACGCTGCCCGACCTCAAGAGCGGACTGTTCAGCACCGACGAGTTCCGCATGTACAGCTTCAAGGTGAAGCCGTGCTCCCGCGCCTACTCCCATGACTGGACCGAGTGCCCCTTCGTCCACCCCGGCGAGAACGCGCGCCGCCGCGACCCTCGCCGCTACTCCTACAGCTGCGTGCCTTGCCCGGAGTTCCGCAAGGGCGGCTCGTGCCGCAAGGGCGACGCGTGCGAGTACGCCCATGGCGTGTTCGAGTGCTGGCTCCACCCGGCGCAGTACAGGACGCGCCTCTGCAAGGACGAGGTCGGCTGCGCGCGCCGCATCTGCTTCTTCGCCCACAAGCCCGACGAGCTCCGCGCCGTCAACCCCTCCGCCGTGTCCGTCGTTCGCGTTCCGCGGCCAATCCGCCATGCCGGTGGCGACGCACGCCGCGGCGGCGGAGCCGGACGTGTCATGGGTGAACTCTCTTGTCAAGGACGGCCACGCCGCCGGCGACATATTCGCGCAGTGGCCGGAGCAGGAGCAGATGGTGGCATGATCATCAGAGGCTCATAG
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| Protein seq | MCSGPRKPSTPPLPQQQKEATVMAASLLLELAAADDVAAVRRVVEEEKVSLGVAGLWYGPSASGVARLGMERRTAAMVAALYGSTGVLGYVVAAAPAEAARASETDGATPLHMAAAGGAANAVAATRLLLAAGASVDALSASGLRAGDLLPRATAAEKAIRLLLKSPAVSPSSSPKKSASPPSPPPPQEAKKEYPPDLTLPDLKSGLFSTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRRYSYSCVPCPEFRKGGSCRKGDACEYAHGVFECWLHPAQYRTRLCKDEVGCARRICFFAHKPDELRAVNPSAVSVVRVPRPIRHAGGDARRGGGAGRVMGELSCQGRPRRRRHIRAVAGAGADGGMIIRGS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 13.282822 | 18.063101 | 9.860988 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g03760 | RBH | 8.299947 | 10.689150 | 2.661582 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0128200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0002070 | RBH | 1.847372 | 40.973923 | 11.360314 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0002090 | RBH | 2.108815 | 0.000000 | 8.702769 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0002150 | RBH | 6.454382 | 22.254597 | 10.668415 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0002020 | RBH | 0.755219 | 1.069201 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0002110 | RBH | 45.212440 | 53.610703 | 33.733135 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0025600 | RBH | 78.5264375 | 744.948547 | 115.398781 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0002070 | RBH | 2.222707 | 3.075342 | 4.167950 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0026100 | RBH | 155.9170645 | 925.095215 | 36.413142 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0002060 | RBH | 4.665966 | 0.380857 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0002000 | RBH | 4.923733 | 35.921673 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0002100 | RBH | 21.099955 | 31.472902 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0002110 | RBH | 3.918348 | 3.800116 | 5.669480 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0002120 | RBH | 1.096740 | 26.143538 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G001980 | RBH | 1.735090 | 3.950552 | 4.942595 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0002130 | RBH | 5.532659 | 64.155075 | 22.862656 |
