Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_05g0123000 | OGI:05003620 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr05:1266639-1267076 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCATGTCCAGAGCGGCTCGTCGACCCAGCCGATGGGGCTCGCTTGCATGGCGGCGGCGCCGGCACCGTCGACGACGTAGAGCGCGTCGACGGGCGCGGCGGGGGAGGCGGCGCCGCCGACGGCGGCGCAGTAGGCGGCGGCGGCGGCGGTGGTGGTGGGGTGCTGGGGCGGCGCGGCGGCGGCCATCTCCATGCAGAGGAGCGCGACGAGGTGGGCGTGCTGGGCGCGGGCGCCGGCGAGCTCGGCGTGGGCGCGCGCCAGCTGCGCCTTGAGGTCGTTGACCTGCTTCTGCAGCTGGCAGATGGCCCCCGCGCAGCCGTACACCGGGTCCCGGATCCGCGCGTTCGCCTCGTACACCATGCTGCTCACCGCGTCCGCCCGCTGCTCCTCCGGCAACTCCTGCAACCACGACGGCGACATTAACGGCGAGCTCGCCAT
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| CDS seq | ATGGCGAGCTCGCCGTTAATGTCGCCGTCGTGGTTGCAGGAGTTGCCGGAGGAGCAGCGGGCGGACGCGGTGAGCAGCATGGTGTACGAGGCGAACGCGCGGATCCGGGACCCGGTGTACGGCTGCGCGGGGGCCATCTGCCAGCTGCAGAAGCAGGTCAACGACCTCAAGGCGCAGCTGGCGCGCGCCCACGCCGAGCTCGCCGGCGCCCGCGCCCAGCACGCCCACCTCGTCGCGCTCCTCTGCATGGAGATGGCCGCCGCCGCGCCGCCCCAGCACCCCACCACCACCGCCGCCGCCGCCGCCTACTGCGCCGCCGTCGGCGGCGCCGCCTCCCCCGCCGCGCCCGTCGACGCGCTCTACGTCGTCGACGGTGCCGGCGCCGCCGCCATGCAAGCGAGCCCCATCGGCTGGGTCGACGAGCCGCTCTGGACATGA
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| Protein seq | MASSPLMSPSWLQELPEEQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVNDLKAQLARAHAELAGARAQHAHLVALLCMEMAAAAPPQHPTTTAAAAAYCAAVGGAASPAAPVDALYVVDGAGAAAMQASPIGWVDEPLWT |
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| Function | LOB domain-containing protein 11 [UniProtKB/Swiss-Prot:Q9SK08] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0123000 | OsNip_05t0123000-00 | Chr05 | 1266639 | 1267076 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCGAGCTCGCCGTTAATGTCGCCGTCGTGGTTGCAGGAGTTGCCGGAGGAGCAGCGGGCGGACGCGGTGAGCAGCATGGTGTACGAGGCGAACGCGCGGATCCGGGACCCGGTGTACGGCTGCGCGGGGGCCATCTGCCAGCTGCAGAAGCAGGTCAACGACCTCAAGGCGCAGCTGGCGCGCGCCCACGCCGAGCTCGCCGGCGCCCGCGCCCAGCACGCCCACCTCGTCGCGCTCCTCTGCATGGAGATGGCCGCCGCCGCGCCGCCCCAGCACCCCACCACCACCGCCGCCGCCGCCGCCTACTGCGCCGCCGTCGGCGGCGCCGCCTCCCCCGCCGCGCCCGTCGACGCGCTCTACGTCGTCGACGGTGCCGGCGCCGCCGCCATGCAAGCGAGCCCCATCGGCTGGGTCGACGAGCCGCTCTGGACATGA
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| Protein seq | MASSPLMSPSWLQELPEEQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVNDLKAQLARAHAELAGARAQHAHLVALLCMEMAAAAPPQHPTTTAAAAAYCAAVGGAASPAAPVDALYVVDGAGAAAMQASPIGWVDEPLWT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0287400 | RBH | 0.332360 | 1.596900 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g03160 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0123000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0001730 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0001730 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0001800 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0001650 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0001700 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0020000 | RBH | 0.6032515 | 0.676559 | 0.021272 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0001670 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0021100 | RBH | 0.819566 | 1.386526 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0001700 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0001630 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0001690 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0001700 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0001730 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G001630 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0001750 | RBH | 0.0 | 5.378243 | 0.0 |
