Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_05g0110900 | OGI:05001540 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr05:577182-580396 | ||||||||
| Gene Symbol | RLCK176, OsRLCK176, BML | ||||||||||
| DNA seq | TTTAAAAATCAGGAAAAACTGGATCTGGGCACATCTGTTGCCTCGAACAAAAATTTCGCAGCATTAGAACTAGATATAAACTGTACAATCCACAATGCACTGAACTGAATGCATGCAGATATAGGCGACCACATACTTTTTACTTCAGACAAGACTCTGACTAGAAGCTGCAAAAACAACTAAAACAGGCAAGCACCAAGGATTCACAACTCTCCTCTTCTTTACAGGTCCCTCTAAGAGCCTACACTACTCATCTCAACAGATCTATATCTGATCATATGATATATGATTGTTCACTTAAACCAGCCTCGCATTTGCGGGCTTCCCCTTCGATGACGGTTTCGATCCATTGCTGCCTGCGTTCTTGCTGCTGGACTTCTTCTGCAGCTGAGGATTTGCCCCTGTCTCCTTGGAATCCTGGAGCTGTTCTAATACAGCAACAACCTGCTCCATGTTAGGCCTGTTCTTGGCCTCCACAGAGATGCATTGAAGTGCCAGTGTTGCAGCCTTCTGGGCCTTGGCAAGGGAGTACTGCCCGCCCAACCGGGCGTCCAGGATGCGGAAGATGCGCCGCTTGCTCATCAGGTATGGCCTAGCCCACTCCACCAGATTGTGCTCCCCGGTTGGGCGGTTCTTGTCCAGTGCTCGTCGTCCTGATAGCATCTCTAGCAGCACAACTCCAAAGCTATAGACGTCGCTCTTGGTGGTCAGATGGCCTTCACAACATACAGAGAAATGTGTCAGTTAATTCAATAATAGCCAAATCACTCTATGTTTGGCACCCAGATGCCAGCAAGGGAACCATAGATTGACAGTAAACACGATGTGTAATGAAGCTCAAATCTTTGTCGTGCATGTTCATTCATTGTGATGAAATGATTACATTCTAGGATTCAGAACATGGAAGTAATATGCTACCTGTTGCAAGGTATTCTGGTGCAGCATATCCATAAGTCCCCATCACCCTTGTGGAGACATGGCTCTTGTCACCAGTCGGTCCATCCTTTGCCAGCCCAAAATCAGAGAGCTTTGCATCATAGTTCTGAAAATACAGTCTGTCTATCAGATCACCAGTTAAGCTATCTTGTGAACACAAAGGATAATAGTTCTGAGGACTCCGTACCGCATCCAAAAGGACATTAGAGGTCTTGAAATCACGGTAGATGACTTTAACCTTGTCACTGTGGAGAAATGCGAGCCCTTTTGCTGCTCCAAGGGCAATTTTCATCCGAAGGTTCCAGGAGAGCGGCTGAAAATGCGTACTCCCTGCATTTTACAACACATTTTAGCATGTTGTATTCCAAATTGTAAATCAGAAGCTAGCAACTAGGAAAGTACAAAAAAAAACTACTTACTCCTGAAAAGATGATTTTCCAAGCTACCACGTGGCATGAACTCATAAACAAGAAGACGCTGCTCATCTTCGACGCAGTACCCAACGAGCCTTACAAGATATGGGTGTGACAACTGTCCAAGATAATTCACTTCAGCCTGCACAAATTGAAAGGAAGATAATGTCATACACAGTGCAAACTTGACAGGAAAGAATCAGCCAGTGGGTACTAACCAGCCATTCCCTGTGACCCTGGTGGCCTTCCTGATTCAACTTCTTTACAGCAATGACCATCCCTGTGCCTGGCTTAGTTGGTGCGAGCGTCTTCTCATCGATCCACCCTTTGAAGACTGATCCAAAGCCTCCCTCACCAAGCACACTGTCTGGCCGGAAGTTTCTGGTGGCAGTCCTCAGCTCATTGAAGGCAAAGGCCTTGACATTTGCTGCCTCCAGGATCTCATCCTCGCTCCGTGGTGTTGGCGGCACCGAGGCTGCAGACACACTGGAGTTGCTAGCATACTTGGATGTCCCCCCTAAACAACAGAAGACAGTACAAATTTTCAGGCCGTGGTCCATTAGATTTTAGCCTGATCAAGTTGTTGTTTCTTTGCTTGGTTTGGGTATTAAAAGGCAAAAACTTCACAGATAAGTTAAGAGGTTGCACCAAAAGTATTGAACTTTCTGCATAATACAGTCAATAACATTGAAAAAAAAGCACGCAGATTTTGGTAGAAAGTAGCACCAAAATTAGAATTTTCCACTTAGCCTGATTTGAGCTTCTGCACTTGGAACGAACAAATACTAGCAACAAAGGAAAAGTCAGATAAAGTTATATGTGCGTTTCCATTGGAAGCTTCCTTTCCTACTCCTAGTCTGGAGAAGGAGAAGAATTGAGCTTTACGCATGAAACAAATCCAAGAAGAGCTCAAACTAGAACTTATACGCACGCACTACCAGTGCTAGGAGACAAGGCATGTGATTGGTGACCCTAAACAGCCTGTAGGAAGCCATTAAAAAGGGGATTAAATTAACATAACCTATAGTCCTATACTAGTAACACACAAGTCAGACACAATTACACAAATCACAAAATTCCCAACACAGAGATATGACTGATTGATTGGATACTTCAGAAATTTTTTTTAAAAAAAAAACTAAAGGAAAAAAAAAGGAATAAACATAGCATACATGTCTAGATTCTAATCACCATAGTAAGAAATGCTATATGGAGGAAGGAAGAAGAGAGGAGAAAGGTGAGACGCACCAGAAGGGGAGGAGGCGCTGCGGCAAGGGCTCTCCGAGCTGATCTTGGCGCCCCAGCAATTCCCCATGGCGAAAATCCACCACCACCAACAACAACACCTTCACCTCGGAGGTAGTAGAGCCCAAGAAGCACCACACCTAACTCACAAAAAGACGCCTCCTTTTCGCGGGAATCGAATCGACAAAGGCTCAAGAACGAGAGGCCAGCACGGCACAGAAGCCACAAGAAGCGATCAGAACAGCTGAAATCGAATCACGAACCAGGACACCTGCTCTCCTCTCCGGCTCCTCAAAACTAAATCAACTACCTACTACTCCTCCCAATCCTCTCTCTGTTCTTCTTCAAGGAGATACGAGATAGAGAGATAGAAATAGATACAGATAGGAGATGAGAGGGAGGGGAGCAAGAGATTTGTACTATGGAAGAAGTTGGGATGAATGGATCAAAGGATTGGTGGGAGAGGAGATTAAAGGGGATATGTATCTGTGACTCTCGTGCTTGCCTGCCTTAGCTGAGGGACTCAACTCTGTTGACCTTTTGAGCATGAGAGCGACGCACAGCATGCAACCATCAGCTGCTGCCTTTCGATTTCTTTCTCCTTCTTCTAGAATTCTACTC
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| CDS seq | ATGGGGAATTGCTGGGGCGCCAAGATCAGCTCGGAGAGCCCTTGCCGCAGCGCCTCCTCCCCTTCTGGGGGGACATCCAAGTATGCTAGCAACTCCAGTGTGTCTGCAGCCTCGGTGCCGCCAACACCACGGAGCGAGGATGAGATCCTGGAGGCAGCAAATGTCAAGGCCTTTGCCTTCAATGAGCTGAGGACTGCCACCAGAAACTTCCGGCCAGACAGTGTGCTTGGTGAGGGAGGCTTTGGATCAGTCTTCAAAGGGTGGATCGATGAGAAGACGCTCGCACCAACTAAGCCAGGCACAGGGATGGTCATTGCTGTAAAGAAGTTGAATCAGGAAGGCCACCAGGGTCACAGGGAATGGCTGGCTGAAGTGAATTATCTTGGACAGTTGTCACACCCATATCTTGTAAGGCTCGTTGGGTACTGCGTCGAAGATGAGCAGCGTCTTCTTGTTTATGAGTTCATGCCACGTGGTAGCTTGGAAAATCATCTTTTCAGGAGGAGTACGCATTTTCAGCCGCTCTCCTGGAACCTTCGGATGAAAATTGCCCTTGGAGCAGCAAAAGGGCTCGCATTTCTCCACAGTGACAAGGTTAAAGTCATCTACCGTGATTTCAAGACCTCTAATGTCCTTTTGGATGCGAACTATGATGCAAAGCTCTCTGATTTTGGGCTGGCAAAGGATGGACCGACTGGTGACAAGAGCCATGTCTCCACAAGGGTGATGGGGACTTATGGATATGCTGCACCAGAATACCTTGCAACAGGCCATCTGACCACCAAGAGCGACGTCTATAGCTTTGGAGTTGTGCTGCTAGAGATGCTATCAGGACGACGAGCACTGGACAAGAACCGCCCAACCGGGGAGCACAATCTGGTGGAGTGGGCTAGGCCATACCTGATGAGCAAGCGGCGCATCTTCCGCATCCTGGACGCCCGGTTGGGCGGGCAGTACTCCCTTGCCAAGGCCCAGAAGGCTGCAACACTGGCACTTCAATGCATCTCTGTGGAGGCCAAGAACAGGCCTAACATGGAGCAGGTTGTTGCTGTATTAGAACAGCTCCAGGATTCCAAGGAGACAGGGGCAAATCCTCAGCTGCAGAAGAAGTCCAGCAGCAAGAACGCAGGCAGCAATGGATCGAAACCGTCATCGAAGGGGAAGCCCGCAAATGCGAGGCTGGTTTAA
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| Protein seq | MGNCWGAKISSESPCRSASSPSGGTSKYASNSSVSAASVPPTPRSEDEILEAANVKAFAFNELRTATRNFRPDSVLGEGGFGSVFKGWIDEKTLAPTKPGTGMVIAVKKLNQEGHQGHREWLAEVNYLGQLSHPYLVRLVGYCVEDEQRLLVYEFMPRGSLENHLFRRSTHFQPLSWNLRMKIALGAAKGLAFLHSDKVKVIYRDFKTSNVLLDANYDAKLSDFGLAKDGPTGDKSHVSTRVMGTYGYAAPEYLATGHLTTKSDVYSFGVVLLEMLSGRRALDKNRPTGEHNLVEWARPYLMSKRRIFRILDARLGGQYSLAKAQKAATLALQCISVEAKNRPNMEQVVAVLEQLQDSKETGANPQLQKKSSSKNAGSNGSKPSSKGKPANARLV |
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| Function | Receptor-like cytoplasmic kinase 176 [UniProtKB/Swiss-Prot:Q65XV8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0110900 | OsNip_05t0110900-01 | Chr05 | 577182 | 580396 | - | RAP2018-11-26 | ||
| CDS seq | ATGGGGAATTGCTGGGGCGCCAAGATCAGCTCGGAGAGCCCTTGCCGCAGCGCCTCCTCCCCTTCTGGGGGGACATCCAAGTATGCTAGCAACTCCAGTGTGTCTGCAGCCTCGGTGCCGCCAACACCACGGAGCGAGGATGAGATCCTGGAGGCAGCAAATGTCAAGGCCTTTGCCTTCAATGAGCTGAGGACTGCCACCAGAAACTTCCGGCCAGACAGTGTGCTTGGTGAGGGAGGCTTTGGATCAGTCTTCAAAGGGTGGATCGATGAGAAGACGCTCGCACCAACTAAGCCAGGCACAGGGATGGTCATTGCTGTAAAGAAGTTGAATCAGGAAGGCCACCAGGGTCACAGGGAATGGCTGGCTGAAGTGAATTATCTTGGACAGTTGTCACACCCATATCTTGTAAGGCTCGTTGGGTACTGCGTCGAAGATGAGCAGCGTCTTCTTGTTTATGAGTTCATGCCACGTGGTAGCTTGGAAAATCATCTTTTCAGGAGGAGTACGCATTTTCAGCCGCTCTCCTGGAACCTTCGGATGAAAATTGCCCTTGGAGCAGCAAAAGGGCTCGCATTTCTCCACAGTGACAAGGTTAAAGTCATCTACCGTGATTTCAAGACCTCTAATGTCCTTTTGGATGCGAACTATGATGCAAAGCTCTCTGATTTTGGGCTGGCAAAGGATGGACCGACTGGTGACAAGAGCCATGTCTCCACAAGGGTGATGGGGACTTATGGATATGCTGCACCAGAATACCTTGCAACAGGCCATCTGACCACCAAGAGCGACGTCTATAGCTTTGGAGTTGTGCTGCTAGAGATGCTATCAGGACGACGAGCACTGGACAAGAACCGCCCAACCGGGGAGCACAATCTGGTGGAGTGGGCTAGGCCATACCTGATGAGCAAGCGGCGCATCTTCCGCATCCTGGACGCCCGGTTGGGCGGGCAGTACTCCCTTGCCAAGGCCCAGAAGGCTGCAACACTGGCACTTCAATGCATCTCTGTGGAGGCCAAGAACAGGCCTAACATGGAGCAGGTTGTTGCTGTATTAGAACAGCTCCAGGATTCCAAGGAGACAGGGGCAAATCCTCAGCTGCAGAAGAAGTCCAGCAGCAAGAACGCAGGCAGCAATGGATCGAAACCGTCATCGAAGGGGAAGCCCGCAAATGCGAGGCTGGTTTAA
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| Protein seq | MGNCWGAKISSESPCRSASSPSGGTSKYASNSSVSAASVPPTPRSEDEILEAANVKAFAFNELRTATRNFRPDSVLGEGGFGSVFKGWIDEKTLAPTKPGTGMVIAVKKLNQEGHQGHREWLAEVNYLGQLSHPYLVRLVGYCVEDEQRLLVYEFMPRGSLENHLFRRSTHFQPLSWNLRMKIALGAAKGLAFLHSDKVKVIYRDFKTSNVLLDANYDAKLSDFGLAKDGPTGDKSHVSTRVMGTYGYAAPEYLATGHLTTKSDVYSFGVVLLEMLSGRRALDKNRPTGEHNLVEWARPYLMSKRRIFRILDARLGGQYSLAKAQKAATLALQCISVEAKNRPNMEQVVAVLEQLQDSKETGANPQLQKKSSSKNAGSNGSKPSSKGKPANARLV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.275287 | 2.025689 | 6.113012 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0973500 | RBH | 0.265223 | 0.0 | 1.419283 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g02020 | RBH | 2.128739 | 1.442167 | 1.505463 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0110900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0000820 | RBH | 1.856194 | 22.463837 | 4.696348 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0000820 | RBH | 0.426842 | 6.583800 | 3.109024 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0000850 | RBH | 1.761785 | 16.243845 | 8.577761 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0000800 | RBH | 0.396268 | 0.182863 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0000790 | RBH | 8.274488 | 14.436870 | 17.364401 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0009200 | RBH | 16.8901985 | 27.262843 | 23.8322105 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0000810 | RBH | 0.717779 | 1.465069 | 1.625785 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0009500 | RBH | 17.1840685 | 12.060839 | 7.53582 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0000830 | RBH | 0.670468 | 0.753461 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0000760 | RBH | 0.991074 | 17.826664 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0000810 | RBH | 7.294567 | 18.560604 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0000810 | RBH | 2.240002 | 1.802069 | 2.392775 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0000820 | RBH | 0.483116 | 7.723847 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G000750 | RBH | 0.630673 | 1.266678 | 3.200447 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0000850 | RBH | 3.729141 | 21.365952 | 9.721175 |
