Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0689000 | OGI:04103020 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:35245424-35246736 | ||||||||
| Gene Symbol | prx64 | ||||||||||
| DNA seq | AGGAAAGAAAAACAGTCTTACTAGTTATTATTGCACGGACATAACGAAAGCATATGCGTACAAAAGCCAAGGCCTGAAGACTAAAGAGACTAGGATCAGCTAGCGACGTCAAGCACCTAGCTCCCTAATTAACGAGCAACGACAGACAGCTGAATGATCAAGCAGAAGCAGCGAAGCCCTCCTCATCGCTGGTGGCGAAGTCGACGAGGCTCTGGCTGTTGGTCCTGAAGCAGCTGCGGCGGATCTCGCCGACGTTCCTGTCAGTCCTCGGCACATTGCTTAGTTTGACCATGGACTTGGCGAACTGCGTGAAGAAGGCGGCCTTGTCCGTGGCGAACTGCCTGACGATGGGCGCCGTGATCCGGTCCTTGATGAGCGCCATGTCGGAGGTGAAGACGCCCTGGTTGTGGATGAGCGCGATGTAGTAGGCGTTGTCGAAGGCGTCGGGGGTGATCACGTCCAGGTTCTGCAGCCGGTTGGGGTCCTTGGTGCAGTTCAACGCCAGCTTCTTGGAGAAGGTGTCGTCCTGGCGGCGGGCGCGGTCATCGAAGAAGGCGCAGCGTGTCCTCCCGACGGTGTGCCCGCCGGAGAGCGCCACCAGGTCGGCGGCGTCCCGCAGTCCCCTGCTTGCAAAAAGGTCGATGAGATCCTGGACTCTGGAGGTGCCCGGGCCCGGGAGATCTCCGACGAGGTCCAACGATGCCGGAGCGAGGCTGTCTTTTTGGCCGAGTGGCACGGCGTAAGAGGGGCCGCCGGAGACGACGACAGCGTCGCGGGTGGCGAGGGCGGAGATGTCGGCGCAGGAGACGGTGGGGCCGCAGGCGGCGTGCACCTTGGCGCGGATGTCCTCCACCAGCTGCAGCGCCCGCGGCTGCAGCGTGAGGTTTGGGCCCATGCCCTGCTCCGAGTTGCTGCCTCCTCTCAGATACACCGACGCATCGCACCCCTGCATATATATATGTATGTTCAGTTCAGTACAGCATTGTTCGTCGGTACGTGCAAATGTTCTTGCGTGCGTGCCTGCGGGAAGCAGTCGTGGAAGAAGATGCGGAGGAGGCCGGCGGCGAGGGCGATCTCCTGCTGGAGAGCGGCTTGCACGGAGGAGCGCACGATGGACTCCAGCTGCGGGCACGACGCCGCGTGGAAGTCCACGGACAACTCTGCTGCTGCTGCTGGTGAGGAGATGAGGAGGACGGCGACGATGGAGACGAGCTCCAGGACGGCCAGTCTCCTGCTCGCTGCACCCATCTCAATTTGGCTCTCCGCACTCACTCTCTTACCGGCTGTGCTGTGCTAGCTTGTGGCTTCCTCAC
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| CDS seq | ATGGGTGCAGCGAGCAGGAGACTGGCCGTCCTGGAGCTCGTCTCCATCGTCGCCGTCCTCCTCATCTCCTCACCAGCAGCAGCAGCAGAGTTGTCCGTGGACTTCCACGCGGCGTCGTGCCCGCAGCTGGAGTCCATCGTGCGCTCCTCCGTGCAAGCCGCTCTCCAGCAGGAGATCGCCCTCGCCGCCGGCCTCCTCCGCATCTTCTTCCACGACTGCTTCCCGCAGGGGTGCGATGCGTCGGTGTATCTGAGAGGAGGCAGCAACTCGGAGCAGGGCATGGGCCCAAACCTCACGCTGCAGCCGCGGGCGCTGCAGCTGGTGGAGGACATCCGCGCCAAGGTGCACGCCGCCTGCGGCCCCACCGTCTCCTGCGCCGACATCTCCGCCCTCGCCACCCGCGACGCTGTCGTCGTCTCCGGCGGCCCCTCTTACGCCGTGCCACTCGGCCAAAAAGACAGCCTCGCTCCGGCATCGTTGGACCTCGTCGGAGATCTCCCGGGCCCGGGCACCTCCAGAGTCCAGGATCTCATCGACCTTTTTGCAAGCAGGGGACTGCGGGACGCCGCCGACCTGGTGGCGCTCTCCGGCGGGCACACCGTCGGGAGGACACGCTGCGCCTTCTTCGATGACCGCGCCCGCCGCCAGGACGACACCTTCTCCAAGAAGCTGGCGTTGAACTGCACCAAGGACCCCAACCGGCTGCAGAACCTGGACGTGATCACCCCCGACGCCTTCGACAACGCCTACTACATCGCGCTCATCCACAACCAGGGCGTCTTCACCTCCGACATGGCGCTCATCAAGGACCGGATCACGGCGCCCATCGTCAGGCAGTTCGCCACGGACAAGGCCGCCTTCTTCACGCAGTTCGCCAAGTCCATGGTCAAACTAAGCAATGTGCCGAGGACTGACAGGAACGTCGGCGAGATCCGCCGCAGCTGCTTCAGGACCAACAGCCAGAGCCTCGTCGACTTCGCCACCAGCGATGAGGAGGGCTTCGCTGCTTCTGCTTGA
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| Protein seq | MGAASRRLAVLELVSIVAVLLISSPAAAAELSVDFHAASCPQLESIVRSSVQAALQQEIALAAGLLRIFFHDCFPQGCDASVYLRGGSNSEQGMGPNLTLQPRALQLVEDIRAKVHAACGPTVSCADISALATRDAVVVSGGPSYAVPLGQKDSLAPASLDLVGDLPGPGTSRVQDLIDLFASRGLRDAADLVALSGGHTVGRTRCAFFDDRARRQDDTFSKKLALNCTKDPNRLQNLDVITPDAFDNAYYIALIHNQGVFTSDMALIKDRITAPIVRQFATDKAAFFTQFAKSMVKLSNVPRTDRNVGEIRRSCFRTNSQSLVDFATSDEEGFAASA |
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| Function | Peroxidase 12 [UniProtKB/Swiss-Prot:Q96520] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0689000 | OsNip_04t0689000-01 | Chr04 | 35245424 | 35246736 | - | RAP2018-11-26 | ||
| CDS seq | ATGGGTGCAGCGAGCAGGAGACTGGCCGTCCTGGAGCTCGTCTCCATCGTCGCCGTCCTCCTCATCTCCTCACCAGCAGCAGCAGCAGAGTTGTCCGTGGACTTCCACGCGGCGTCGTGCCCGCAGCTGGAGTCCATCGTGCGCTCCTCCGTGCAAGCCGCTCTCCAGCAGGAGATCGCCCTCGCCGCCGGCCTCCTCCGCATCTTCTTCCACGACTGCTTCCCGCAGGGGTGCGATGCGTCGGTGTATCTGAGAGGAGGCAGCAACTCGGAGCAGGGCATGGGCCCAAACCTCACGCTGCAGCCGCGGGCGCTGCAGCTGGTGGAGGACATCCGCGCCAAGGTGCACGCCGCCTGCGGCCCCACCGTCTCCTGCGCCGACATCTCCGCCCTCGCCACCCGCGACGCTGTCGTCGTCTCCGGCGGCCCCTCTTACGCCGTGCCACTCGGCCAAAAAGACAGCCTCGCTCCGGCATCGTTGGACCTCGTCGGAGATCTCCCGGGCCCGGGCACCTCCAGAGTCCAGGATCTCATCGACCTTTTTGCAAGCAGGGGACTGCGGGACGCCGCCGACCTGGTGGCGCTCTCCGGCGGGCACACCGTCGGGAGGACACGCTGCGCCTTCTTCGATGACCGCGCCCGCCGCCAGGACGACACCTTCTCCAAGAAGCTGGCGTTGAACTGCACCAAGGACCCCAACCGGCTGCAGAACCTGGACGTGATCACCCCCGACGCCTTCGACAACGCCTACTACATCGCGCTCATCCACAACCAGGGCGTCTTCACCTCCGACATGGCGCTCATCAAGGACCGGATCACGGCGCCCATCGTCAGGCAGTTCGCCACGGACAAGGCCGCCTTCTTCACGCAGTTCGCCAAGTCCATGGTCAAACTAAGCAATGTGCCGAGGACTGACAGGAACGTCGGCGAGATCCGCCGCAGCTGCTTCAGGACCAACAGCCAGAGCCTCGTCGACTTCGCCACCAGCGATGAGGAGGGCTTCGCTGCTTCTGCTTGA
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| Protein seq | MGAASRRLAVLELVSIVAVLLISSPAAAAELSVDFHAASCPQLESIVRSSVQAALQQEIALAAGLLRIFFHDCFPQGCDASVYLRGGSNSEQGMGPNLTLQPRALQLVEDIRAKVHAACGPTVSCADISALATRDAVVVSGGPSYAVPLGQKDSLAPASLDLVGDLPGPGTSRVQDLIDLFASRGLRDAADLVALSGGHTVGRTRCAFFDDRARRQDDTFSKKLALNCTKDPNRLQNLDVITPDAFDNAYYIALIHNQGVFTSDMALIKDRITAPIVRQFATDKAAFFTQFAKSMVKLSNVPRTDRNVGEIRRSCFRTNSQSLVDFATSDEEGFAASA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0689000 | OsNip_04t0689000-02 | Chr04 | 35245425 | 35246734 | - | IsoSeq | ||
| CDS seq | ATGTGCCGAGGACTGACAGGAACGTCGGCGAGATCCGCCGCAGCTGCTTCAGGACCAACAGCCAGAGCCTCGTCGACTTCGCCACCAGCGATGAGGAGGGCTTCGCTGCTTCTGCTTGATCATTCAGCTGTCTGTCGTTGCTCGTTAATTAGGGAGCTAGGT |
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| Protein seq | MCRGLTGTSARSAAAASGPTARASSTSPPAMRRASLLLLDHSAVCRCSLIRELG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 1.444835 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0688600 | RBH | 0.216631 | 0.0 | 0.526844 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g59260 | RBH | 0.0 | 0.0 | 0.295776 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0689000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0031910 | RBH | 0.0 | 2.124801 | 0.770293 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0032680 | RBH | 0.0 | 4.992669 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0032250 | RBH | 0.0 | 14.119144 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0032100 | RBH | 0.0 | 3.124902 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0032380 | SBH | 0.0 | 0.0 | 3.363317 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0556600 | RBH | 3.8202765 | 102.132744 | 96.613762 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0030980 | SBH | 0.069409 | 7.706303 | 0.188825 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0562600 | RBH | 3.723458 | 20.444683 | 8.383476 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0031460 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0031260 | SBH | 0.685717 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0031390 | SBH | 1.691352 | 16.330233 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0031980 | RBH | 0.0 | 3.508473 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0031940 | RBH | 0.400996 | 23.364229 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G031450 | RBH | 0.0 | 50.034000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0031180 | SBH | 1.722616 | 16.841997 | 3.523848 |
