Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0686300 | OGI:04102850 | 3/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:35084318-35086242 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCGATGACCAAAGTTTTCATCTTGTAAACTCGCTAGGCAAATTAATTAACCGTTTACAGGGTTCATTGCAGGACAGAGTTGTACAGATAAAAGGGCACTAGTTAAGTTGACACTCTTTCTATTCAGTTAAGTGAGTAGTTTTCACATATGCACATTTAACATACATCATGCAGAAGCACAAGCCTTCTTCAGAGCATCAAAGACACCCTGGAGAGTCGCATCTTGCACCAGCACAACCTTTTCCCTCGATTTTGAGCCAGAACCAATAGAAACTTCTCTTTTCTTAACTCCAAGTACCTGAATATGTCAAGTAGGTTCTCAAAATTCTGATGTGATCCATAGAAATACAACATCAAATGTTTAAGCACTAACCCAGCTAAAAAAATGTTTAAGCACTGGAAACATCTGTTCTAATTATCATTATCCGATATATGTATCAACGTCTCTGATGAAATGTACAATAACTCTTTTGATTAGAGAACCTATCTCCAGAGTCCAGACTAAGCACACATTCTCAACCAAGTCTCGAGAATAACAGACTCCGTTTTTTATCTCATATTTTGGAGAATGAATAAGATCGAAATTATCTGAACAGATATAATGCAAGGATCTGTAGAGCAAAAACAATATAAACCATGGTGCAACCGTGCAAGGAGCATGGACGGTAATGATCTGCTCAGGATGATAATAATTGACACGATGAAGTGGGTTAATGATGTATCAGGAATATCTCTTATACTACTGCAATAACAGGTGGAAAACAATGTTATTGGAAACCAAATCTGAGACAAGTTGGTCTGAAGAACAGTTTCATGTGCTCCACGCGGAGCAATTTGGAACTGAGCCACCTTTTTCAGCACACTTAAACTCTAAACAGTGATGACATTGCATCGATTCTTGTAAAGAAAAAGGTTGTTTTCTGTGCTCTAAAACCAAACGCAAAGCAAACCATTTACGCGATGCAAAAATTGTAGAGCCTAGAGTATTAAACTGAATAGTGGACACTCCAAAATCCAAATACCCCGACATAAACCAATGATATCATAGGCTACTTGGAAGAAGTAACACAACTCGCTGAACATAAGCAAAACTAACAAGAACAGTAGGGCAAAGAAGATGAATAGAAATATAGAATGGCAAACCTAGTTAATTCAAGTATTCGATAGTGAAACACATCTCTAAGATGTACTATCAGTTTTCAACCGCTGAAAGAATTAATTGTGGCAGGATGTATAAACTCAGCAGAAGTGCACATTTACAGACGTTGTGGAAACAATGCTCTCTACTGCTTGAGGCATGTTTTTTTTCGTTAGCTACATATTCCATCAGCACTAGTTAATGTGAAGTTTGAATCTTGACTGAAAAGGGGGAGTTTTCAACCACGTCTCACTTTCCAGACTAGACAAATATGATGATGTAGTTTTTAAGCAAGTTATATGGTGTATTTTCTTCTGAGAGCCTTGCTGTATCCAAAATTCCTATGCATACAACCATACTGGAGTATAAATCATCATGCCAACTAAAATTGATCTCAATCAGAAAATCCACAAGCAGAGCAAGCAAGAAAGCACTTACGGAGCTGATGAAGTCGACGAGAGCGGCGTTGGCCTCCCCGTCCCTCGCCGGCGCGTCGATCTGGACGCCGACGGCCTCGTCGCCGATCTCTGCAGAATCGAAGGATGCGCGTATGAAGTAAGTAAAGGGCGAAAGTTGGTGTTCAGGGAGGAGGGGAAAGAGGGGGACGGACCGGTGATGGTGGCGAGCTTGGAGCCTGGCTTGGCTTGGATGGAGATGGCGACGGTGGAGGGCGGCATCAGGCGGAGGCAGGCCGGGAAGCCTCCGGCGGCGGCGGCGTTGGGGGCGGCGGGCGGCGGTGGGGCCCCTTTGGCCTTGCCTCGTTGCTTCCCCGGAGCCATGTCTGACGG
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| CDS seq | ATGGCTCCGGGGAAGCAACGAGGCAAGGCCAAAGGGGCCCCACCGCCGCCCGCCGCCCCCAACGCCGCCGCCGCCGGAGGCTTCCCGGCCTGCCTCCGCCTGATGCCGCCCTCCACCGTCGCCATCTCCATCCAAGCCAAGCCAGGCTCCAAGCTCGCCACCATCACCGAGATCGGCGACGAGGCCGTCGGCGTCCAGATCGACGCGCCGGCGAGGGACGGGGAGGCCAACGCCGCTCTCGTCGACTTCATCAGCTCCGTACTTGGAGTTAAGAAAAGAGAAGTTTCTATTGGTTCTGGCTCAAAATCGAGGGAAAAGGTTGTGCTGGTGCAAGATGCGACTCTCCAGGGTGTCTTTGATGCTCTGAAGAAGGCTTGTGCTTCTGCATGA |
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| Protein seq | MAPGKQRGKAKGAPPPPAAPNAAAAGGFPACLRLMPPSTVAISIQAKPGSKLATITEIGDEAVGVQIDAPARDGEANAALVDFISSVLGVKKREVSIGSGSKSREKVVLVQDATLQGVFDALKKACASA |
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| Function | UPF0235 protein C15orf40 homolog [UniProtKB/Swiss-Prot:Q9CRC3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0686300 | OsNip_04t0686300-01 | Chr04 | 35084318 | 35086242 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCTCCGGGGAAGCAACGAGGCAAGGCCAAAGGGGCCCCACCGCCGCCCGCCGCCCCCAACGCCGCCGCCGCCGGAGGCTTCCCGGCCTGCCTCCGCCTGATGCCGCCCTCCACCGTCGCCATCTCCATCCAAGCCAAGCCAGGCTCCAAGCTCGCCACCATCACCGAGATCGGCGACGAGGCCGTCGGCGTCCAGATCGACGCGCCGGCGAGGGACGGGGAGGCCAACGCCGCTCTCGTCGACTTCATCAGCTCCGTACTTGGAGTTAAGAAAAGAGAAGTTTCTATTGGTTCTGGCTCAAAATCGAGGGAAAAGGTTGTGCTGGTGCAAGATGCGACTCTCCAGGGTGTCTTTGATGCTCTGAAGAAGGCTTGTGCTTCTGCATGA
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| Protein seq | MAPGKQRGKAKGAPPPPAAPNAAAAGGFPACLRLMPPSTVAISIQAKPGSKLATITEIGDEAVGVQIDAPARDGEANAALVDFISSVLGVKKREVSIGSGSKSREKVVLVQDATLQGVFDALKKACASA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 4.529817 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g58970 | RBH | 0.000000 | 0.000000 | 1.081677 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0686300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0031770 | SBH | 0.115845 | 1.348744 | 0.756175 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0032550 | SBH | 0.036047 | 0.903270 | 1.352252 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0032120 | SBH | 0.392129 | 3.199123 | 1.602963 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0031960 | SBH | 0.020095 | 0.136014 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0032230 | SBH | 1.672771 | 0.000000 | 4.144303 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0554800 | RBH | 2.6954345 | 8.0452645 | 11.385706 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0030850 | SBH | 0.137633 | 0.284257 | 0.262824 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0560700 | RBH | 2.8949455 | 7.376326 | 8.984993 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0031330 | SBH | 0.117454 | 0.086279 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0031120 | SBH | 0.0 | 3.142350 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0031260 | SBH | 0.750230 | 6.006083 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0031830 | SBH | 0.196061 | 0.163267 | 0.402388 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0031830 | SBH | 0.032606 | 2.306149 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G031310 | SBH | 0.229524 | 1.155938 | 0.294351 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0031050 | SBH | 0.000000 | 2.214141 | 5.762430 |
