Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0684600 | OGI:04102610 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:34972015-34972557 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTTAGCTTGGTTAATTGTTAGCTGGTGCGATCGATGGCCGGCACGGCGGAGTCGCCGGCGAGCTCGTGCGTGTCGTCGGACGCGGAGGAGGAGGCGGCGGTGGCGAAGCCGATGGTGGTGGCCGGGTGCCCGCAGTGCCTCATGTACGTGATGCTCTCGGAGGAGGAGCAGCAGCCCAAGTGCCCACGGTGCAAGAGCCCCGTGTTGCTGCACTTCCTCCACGGCGCCGCCGCCGGCGCCGGCGCCGCCGCCAGCAGCAAGCCGCCCTCCAAGACCTAGCTCCTCCATATCCGGTTCTCAATCTCTCCCAGATGGTCGGCCGCCGTCCGTCGTCTTAATTCTAACGCATCCATGTATTATGTTTAATTTTTCTCTCTCGATCGCTAGCTAGCTGTAGTTCCCTTTTTCTAGTAGTAGCTGTTATGTTTTTTTCTGTCATTCGATCTGTGTGTCTTTAGTTAATCTGCACCTCCTCTGTAGCTTGGTCGATCGATCAGGTTAATTTTGTCAAATTAGCACTATTAGCTAGCTAGTAGCTAGACC
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| CDS seq | ATGGCCGGCACGGCGGAGTCGCCGGCGAGCTCGTGCGTGTCGTCGGACGCGGAGGAGGAGGCGGCGGTGGCGAAGCCGATGGTGGTGGCCGGGTGCCCGCAGTGCCTCATGTACGTGATGCTCTCGGAGGAGGAGCAGCAGCCCAAGTGCCCACGGTGCAAGAGCCCCGTGTTGCTGCACTTCCTCCACGGCGCCGCCGCCGGCGCCGGCGCCGCCGCCAGCAGCAAGCCGCCCTCCAAGACCTAG |
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| Protein seq | MAGTAESPASSCVSSDAEEEAAVAKPMVVAGCPQCLMYVMLSEEEQQPKCPRCKSPVLLHFLHGAAAGAGAAASSKPPSKT |
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| Function | Protein GL2-INTERACTING REPRESSOR 2 [UniProtKB/Swiss-Prot:Q9SRN4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0684600 | OsNip_04t0684600-01 | Chr04 | 34972015 | 34972557 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCCGGCACGGCGGAGTCGCCGGCGAGCTCGTGCGTGTCGTCGGACGCGGAGGAGGAGGCGGCGGTGGCGAAGCCGATGGTGGTGGCCGGGTGCCCGCAGTGCCTCATGTACGTGATGCTCTCGGAGGAGGAGCAGCAGCCCAAGTGCCCACGGTGCAAGAGCCCCGTGTTGCTGCACTTCCTCCACGGCGCCGCCGCCGGCGCCGGCGCCGCCGCCAGCAGCAAGCCGCCCTCCAAGACCTAG
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| Protein seq | MAGTAESPASSCVSSDAEEEAAVAKPMVVAGCPQCLMYVMLSEEEQQPKCPRCKSPVLLHFLHGAAAGAGAAASSKPPSKT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g58790 | RBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0684600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0031610 | RBH | 0.0 | 0.0 | 3.261013 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0032400 | RBH | 0.0 | 0.0 | 0.383003 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0031960 | RBH | 0.0 | 0.0 | 2.192377 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0031800 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0032070 | RBH | 1.580185 | 0.0 | 2.724298 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0553100 | RBH | 18.820776 | 9.707705 | 3.4590095 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0030690 | RBH | 0.150813 | 0.000000 | 0.546566 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0559000 | RBH | 3.600507 | 1.912949 | 1.7972705 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0031170 | RBH | 0.097011 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0030960 | RBH | 0.020205 | 3.609360 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0031100 | RBH | 0.415404 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0031670 | RBH | 0.253518 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0031670 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G031150 | RBH | 0.410607 | 0.0 | 0.839469 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0030890 | RBH | 1.072954 | 0.0 | 0.938893 |
