Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0652900 | OGI:04097890 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:33258681-33261192 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AAGATAAGTAGGAAGTCTTTTACCCTTTTGTTATCTAATATGTTACAGAAAAATTTAAGAGTTCAGACGTCCACAGCAACAAATGCAGAGTGGAAAACTGAAGAAAGAAAAAACCATTGCTCCGAAGACAGTTCATACAAGTAAAAGTGAAATTAAGCCTCTTCACTGGTAAATACTCGAACAACAAGATTGAGTGAGCCGATGAGTTTCAGGGTTCGTTCTTCAGCAGCCAATGTGGTTTGTCAAATTTAAGCGTTTGTCTTCAAATTCCTATGTCTGAGGATACCGAGAACAAGAATTTATAGAAGCTTCAGACCACCGGTGACATCATCGACCATGTCAGCTGGCCCTGCTCAATTAAAACAGTACGACAAATATTAGATAGCACAAATCACTGAAAACTGTGGTACACAGTGATTTGAATGTAGCTTACCAAGAATAGCCATGACTGTTCTTGAATCTACAGGAAGCAGAGATGGGAACATAATTAATCCAACAGCAGATATTAAACAGATGCTAAATTGAATAAAGTAAAGCCTGAAGAACTCACTTGGTGCGATCTGTGTTCTTCCAGCATCAATAGTTATGTGTGTTGGGATATTCAAAGACTTTGCTCTTCCCTGCACCAAAAGAAATTTTAATTAAACATAACAGAAAAAATGCAAGCATTAACAACGTTTTATACTATTATGGAATTGAAAGGTAACATATTAGCTATATAAAAGATCTCGTTGAATGCAGAATATAAATATTATGATGCATAAGTGTCAAGTGTTGGGTTTCAAGAAGCGCGGTGATTTTTCTTTTTTCACAGCCAATGTTTCAGAGTGAGTTTTCCAATCGAAATTTCAAGTTGTTTTAACCAATTGTTCGTTGATACTACTAATGCTCTAGTCCACTTCTAATGCCATGAGAATTTCCTTTTTATTTATTAATATGCACAATTTGACAGGTAAAAGGGGAATATTTTCTGTTTCTGTTCATCTGCAGGTATTATACTATTCCAACTCACAAATTACCTTTATAGATGTAGTAAAAATAAAAATAACTTTCAACAATAATGAGTCAACAGGCAACAGAAAAGGGTATTTACTTGTAAAACAAGCATATCTTCCTCGCTTTCAATTTTCACGACCACCTTAACTTGACCACACCTCTCCCACCTAGCAAAGATAGTAAATTAGTTTCCTTCCTGTTGTTATCATGCAATGACAATCGAATTGCTTACATATGAACATGAACATGTGGAAGAAACTTCAAACATAATTGGAAATGTTAAAAAAAATACCTTCTTAATGATTTTGGAGCTCTCTGTTGGAGTTTTTTAAACAGACCCAACGTTGCATGGCTGAGATGACAGAATAAGAGATAATCACTGACATTTGCAAGATAAAAAGAAATATGCACAGGAGAAAAGTTATAAAGCATGACAACACTCCAATGCTGAAGGTAAAGATTAAATGCAGGAGCTGGACATGAAGATAAGCAATTTGTTTGTGCCAATTCATTTATTCCATAACGACAAGTGTATAGTACAACTGTATAAGAGGCAAATTTAGTTATGGTAGGATATATAACAAGTTCTCTAAATCACAAGGTCAACGTGCCAGTCCCAAAAATATGAGTTCTACCTCTTGTAGCCTCAGATAACAATATGATCACAAAATTTCCCCCTTCAAAAAATGGGAAACTCTATTCGAAAGGATTCTTCCTATTTTAACATTGGTTTCAACTTTCACATTCAGACACACAATACACTAATAGCCTATCACTATGTGCTAATTAGTGAGCTCAGTTCATCAGTAAAATAAACTCTACTCAACTGTCGAAACGAAGATACAGATAAACTGAGAAGTATTCACCTGCATTGCGCGGCAATCTTCCCCTTCCCCATCTTCAAATCATTCCTCACAACCAGCACCTGCCACCACCACAGCAACAGCCAACGGAATCAGACATCTCACTCTCTGCGCACATCAAAGAAACAAATCCAGCAGAAAAGTAGAAGGGGATTTTGAGCCAAATTTCCAGTACCATCTTGAAATCCTCTATAATCTCAGCGAGATTCTCGACCTCCAGGGGGCTAGCCGCGGTCCGTGCCTTGGCCCTCTCGGCCTCCTTCGCCGAGTCGGACTTGGTCACCACGTTGCGCGCCCAGAACAGCAGCCGGAGCCCGGCGCGCTTGGGCGCCCGCTTCGCCGCCCGGCTGCGGCCGGAGTTTTCGTCATCATCATCTTCTTCCGAATCCTCCTCGGAATCCTCGTCCGAGGTCTCCCCGGAAGCGGGGGAGGCAGCGACGACCTGGCGGGGGAAGCGGCTGAGGGCGAGGAAGTAGCCGAGGGCGAAGCAGCCCGCGGCGCCAGCTATAGCGGTGGCGGCTCCCGGGATGGCGGCCGCCGTGGGAAGGGAGAGGACGGAGGCCGAGGCGCCCATCGGAGGATCGCCGGCGCCGGTGGCGGCGGCGGCGGCGGCGCAAGGCGGGGAGGGGTTGGGGTTGGGGATGCGCGATACT
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| CDS seq | ATGGGCGCCTCGGCCTCCGTCCTCTCCCTTCCCACGGCGGCCGCCATCCCGGGAGCCGCCACCGCTATAGCTGGCGCCGCGGGCTGCTTCGCCCTCGGCTACTTCCTCGCCCTCAGCCGCTTCCCCCGCCAGGTCGTCGCTGCCTCCCCCGCTTCCGGGGAGACCTCGGACGAGGATTCCGAGGAGGATTCGGAAGAAGATGATGATGACGAAAACTCCGGCCGCAGCCGGGCGGCGAAGCGGGCGCCCAAGCGCGCCGGGCTCCGGCTGCTGTTCTGGGCGCGCAACGTGGTGACCAAGTCCGACTCGGCGAAGGAGGCCGAGAGGGCCAAGGCACGGACCGCGGCTAGCCCCCTGGAGGTCGAGAATCTCGCTGAGATTATAGAGGATTTCAAGATGGTGCTGGTTGTGAGGAATGATTTGAAGATGGGGAAGGGGAAGATTGCCGCGCAATGCAGCCATGCAACGTTGGGTCTGTTTAAAAAACTCCAACAGAGAGCTCCAAAATCATTAAGAAGGTGGGAGAGGTGTGGTCAAGTTAAGGTGGTCGTGAAAATTGAAAGCGAGGAAGATATGCTTGTTTTACAAGGAAGAGCAAAGTCTTTGAATATCCCAACACACATAACTATTGATGCTGGAAGAACACAGATCGCACCAAATTCAAGAACAGTCATGGCTATTCTTGGGCCAGCTGACATGGTCGATGATGTCACCGGTGGTCTGAAGCTTCTATAA
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| Protein seq | MGASASVLSLPTAAAIPGAATAIAGAAGCFALGYFLALSRFPRQVVAASPASGETSDEDSEEDSEEDDDDENSGRSRAAKRAPKRAGLRLLFWARNVVTKSDSAKEAERAKARTAASPLEVENLAEIIEDFKMVLVVRNDLKMGKGKIAAQCSHATLGLFKKLQQRAPKSLRRWERCGQVKVVVKIESEEDMLVLQGRAKSLNIPTHITIDAGRTQIAPNSRTVMAILGPADMVDDVTGGLKLL |
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| Function | Peptidyl-tRNA hydrolase 2, mitochondrial [UniProtKB/Swiss-Prot:Q9Y3E5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0652900 | OsNip_04t0652900-01 | Chr04 | 33258681 | 33261192 | - | RAP2018-11-26 | ||
| CDS seq | ATGGGCGCCTCGGCCTCCGTCCTCTCCCTTCCCACGGCGGCCGCCATCCCGGGAGCCGCCACCGCTATAGCTGGCGCCGCGGGCTGCTTCGCCCTCGGCTACTTCCTCGCCCTCAGCCGCTTCCCCCGCCAGGTCGTCGCTGCCTCCCCCGCTTCCGGGGAGACCTCGGACGAGGATTCCGAGGAGGATTCGGAAGAAGATGATGATGACGAAAACTCCGGCCGCAGCCGGGCGGCGAAGCGGGCGCCCAAGCGCGCCGGGCTCCGGCTGCTGTTCTGGGCGCGCAACGTGGTGACCAAGTCCGACTCGGCGAAGGAGGCCGAGAGGGCCAAGGCACGGACCGCGGCTAGCCCCCTGGAGGTCGAGAATCTCGCTGAGATTATAGAGGATTTCAAGATGGTGCTGGTTGTGAGGAATGATTTGAAGATGGGGAAGGGGAAGATTGCCGCGCAATGCAGCCATGCAACGTTGGGTCTGTTTAAAAAACTCCAACAGAGAGCTCCAAAATCATTAAGAAGGTGGGAGAGGTGTGGTCAAGTTAAGGTGGTCGTGAAAATTGAAAGCGAGGAAGATATGCTTGTTTTACAAGGAAGAGCAAAGTCTTTGAATATCCCAACACACATAACTATTGATGCTGGAAGAACACAGATCGCACCAAATTCAAGAACAGTCATGGCTATTCTTGGGCCAGCTGACATGGTCGATGATGTCACCGGTGGTCTGAAGCTTCTATAA
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| Protein seq | MGASASVLSLPTAAAIPGAATAIAGAAGCFALGYFLALSRFPRQVVAASPASGETSDEDSEEDSEEDDDDENSGRSRAAKRAPKRAGLRLLFWARNVVTKSDSAKEAERAKARTAASPLEVENLAEIIEDFKMVLVVRNDLKMGKGKIAAQCSHATLGLFKKLQQRAPKSLRRWERCGQVKVVVKIESEEDMLVLQGRAKSLNIPTHITIDAGRTQIAPNSRTVMAILGPADMVDDVTGGLKLL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.055558 | 0.777187 | 3.838149 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g55860 | RBH | 1.382622 | 0.519920 | 0.982717 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0652900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0029170 | RBH | 0.0 | 11.694661 | 2.922136 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0029940 | RBH | 0.000000 | 2.124568 | 1.321173 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0029510 | RBH | 0.317066 | 8.549270 | 6.117461 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0029340 | RBH | 0.166759 | 0.437429 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0029600 | RBH | 1.834652 | 34.450901 | 16.510069 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0524300 | RBH | 7.344244 | 12.3203215 | 19.98742 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0028240 | RBH | 0.192136 | 1.676723 | 0.780017 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0529200 | RBH | 7.926245 | 9.3677745 | 25.512552 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0028680 | RBH | 0.150617 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0028520 | RBH | 0.000000 | 19.133785 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0028630 | RBH | 0.0 | 23.195993 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0029210 | RBH | 1.377257 | 1.742865 | 1.293388 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0029200 | RBH | 0.228204 | 7.669749 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G028650 | RBH | 0.290610 | 6.764525 | 2.722375 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0028440 | RBH | 0.000000 | 0.000000 | 5.073888 |
