Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0652500 | OGI:04097830 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:33225809-33230258 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAGAAAGGGTTAAATACCAGTCTTGTTTAATGACTCCAACGAAAATGTAGCACCAGGGCGAGCTTCTGATATTGTCGGATGTGACGTTAGTATGTACAGGACCCATATGTGGAGGCACACCAGGTACACCATGGCCCAAACTAGCGCCTTAGGATTCCGCCTCAAGAAGATATGGCCAGCGGAGAAGATGGAATCGAGCTGTCGGATTGCCGATCCCAGTTGCCGCTGTCCATTCCGTATCCTGTCACGCAACCTTGGCGGGTGTGATTCTTGCCATGTACCAGCTTCGATATCTATCTTTGACGAGGAGCTCGAATAAGCCAACGATGATGATCCGTTATTGTCAAGCGATCTTGAAACTGCCTGCAGATGATAATGAACAATACATTTAACCGGGAAAATTGATAGGAATATACCAATACATTTCTTGTATTGAAGCAAAGACAGCGGTTTGCAGATACAGACCTCTATTCTCAGTAACAAGGCTGCTTTCTCTGAAGAGAGGGACTCAACCTGAAAGAAAACCGTTTAGGTCTCATCATCGTTTCACAAGAATGCAGCACATTGTAGAGAAGAGACAGAAACACTGGTTTCTACAAGCAGATAACAACATTTTGCTGTCAGATGGTAGCCGCTTTCATGTTTGAGGATTCTTTGGTTCACTTTCAATGGGACATGCTGTAAGAACATAAATATTATCTATTGCTAATCAGAAATTTAACGCGGGATGTGACATAACAAGTGGGAACATCCAAGCAACTAACCTGCATCTGTTTCTGAATTAAACGATCAGTGAGTTGATCAAGTCTCTTCTTGAGTTCAATTTCCACTTCTGTAGGATGCACCATTCTTCTTTTTGTCAGCTCAATGTTTTCTTTAATCTTCCTTGCCTATAAACAAATAAAAAGTGGTCAGGTGGTGCACTCAACCCATGCACAAATAGTGCATCTAGAAAAGGTAGACAAGAATGCCCTTACATCCAGTTTATTATTTATTCCCCAACCCTTTTCAAATGATCTAATGCATCATATGTGCAGTAATGAAATAACATAAAGATCGTTGACCAAAATGTCCAAACAATATCACATGGGACTTATAAAAGTGAGTTAGTTGGGACTCCATGAAAGGAATCCAGAAAAGTACCATGCTAAGGCACAGCACAATTATCACCAAAAGCACAAAGAAAGATAAGTCCTGGTAACATAAAAAAACACAACATAATGCTAATGATTAAAGTTATAGTCAGAATAATCTACCTTGTCTTTCAAGTTGACGATTCTATCACATGTTAGAGCATACTCTGCATCAATCATTTCTTCTTCCAGCTTGAACCTTCTCAACGATTCTATCTAGACAAAAGTTCAATGAAGTTACAAATAGAAGGGACAAGGAGACTTTGCTCTTAGGTCAACCATATGATTAGAAGGGCTTAAGAACTAACAAACATTATATGAAAAAAATCTGTACAGTAATAAGTGCAAACAAAACAAAATGCAACACATTTGCTTACTTCATTAACCAAAAGGGGGCTAGTCTTCTGCATCTTTGCTATCTTTCTCTTATATTCTGCTCATATAATGATAAAAAAAAGGTCACATATTTGAAAAAAGAAGCTTTAGATGATGGATTGATGGTATGATTCTCTAAAAAAGAATGCAATGTCACACATTAGTCCAAGTGTTCGACAGAGCTAAAAAAATGAGTCGACATGACACAAAACTACCATAAGAATGAGAAACAAAACCACAATGGACTTACTATCTTGAGTAAGAGTCTTCATATCAACTTCCTCTCGAAGTTGTGCCACCTGATCAACCTAGTTAAATATCAAGAATACCATGATTTTTTAAATTCCATTTTTATGATTGGTATAGCATCTCATAACTTGTGCAGCAACTGTCAAGTATCAACTGAAACAACTCAATGTTACCAAGGCTAGGCAGTAGCCTACCTCTAGTGATAGTAGGCAAAACAAAAATATCAAATTGCATTTGTGGTTTTCATAGGTGTAAAGTATGATCATTTCGACTGCTAATTCCAGAGTATATCAATCATGTCTCAAGTATTACAGAAACCACCAATCTAGGCACTACGGAGTGGAGGACATTAATATCCAAATATATAAGGGAAGCACATAATAAGTCAATGCTGGTCTGGACTAGTGGACTGGGCACTTATACCTGCTACCCAATCTGTTACTCAATACCAAGACTATATACATGTGTATTCATAAAGGACTAAAATAAGAATCCAAAAATCTTAAAGCATTTGGCAGTAAGGCATGTATAAGTCATTAGCTAACTGTAACTAATCCCCAGATATTACTTTATTGTCCTGGCCCCAAAATATTGTACTGCTTTGAATTTATTATGAAAAGCAGCCAAGCATAGCAAAATATGGTGCTCCACACAACTGTATATATATGAAGGCAGCTTGTATGTATCACTGTAGCAGCAGTTAACGTACTTCCCCTTGACTAAGAAAGAACACTTCTAAACAAGTGGCACTGCAAGAAACTGGAAAATAAATAATAACAAGATACCTACTAGTTCAACAAATGACCTAGAGAAACATACAGGAAAGGGAACATATTGCATACTTGAAGATCCAGGTTCCACTGTTCCCTCGCAAGTGACTTTGCAAGCTCTGCATTTGTAACCTGCAAAGATATTAGGTGAGATCACTGCTCAAGTGTTGACAGTTGAGGTCAAATGCTATTTGTCTACCACAAAGTAAAATACTAAGTATCGCGTTACTCATAGTAATCTAGGACAAGAGGGAAGGTAATGCAGCAGAGTCGTGGTACCTCAAGCTTAGCCAACCGTGCAAGGGCTTCCATTCTAGTGCTGTGGTGTCGCTGTTTCTCCATCTCCACAGCCTCCATAGTTTCAATCATGCTATTCTGCAACTCTGAAGCCTGAAATTAAACACAATAAGTGTTGAAAACAATGCTAATCAATCTTGCAAGATACATGAAAATTGAGCAGTCAGCTCTGTCTCACCAAATGACAAGAATCACAAGAGGGAACAGAACATGAACCAATAACCGATGAACAGCATGAGCTGTGCAATGATCATCCAAGTAGATGATGACTCTGGGCAGTAAAACGAAAGCAACACAAATAATGGTTTACACATTGACACTGCTAAAAACCAAAACATGAATGGAATAGAAGTAACAAAAGAAAGTCAAGCATAACTACAATTTTAAGTTGCAAATCATGATCTCGGTACAACTACTTGATTGCATGGGATGCTAAAGTTACTGCACTAATTTCATTGCTGCCTTCGGTGAAAAACAAGGGATATGCCTAGGGTGCTCAGTGCCATTGCTGAGATCAACACAAAGTTGCTGTAGCAAGCAATATATTTCATGATAAAATGTCAGATCGATTGGTGTGGCTTCCTGCACACAAAGTCGCTGTGCCATCCAACCCAACCTAAGCAAACTTGATCCCGCATGACTACAAAGCAAAGTCCGCTAGAATCACTACTGACCCAAACGTTCTGCGAATTACTCTCAGAGGAAAATGTTGTGCTAATGCATTAGAACATTCTCTGTTACCTCCGATCATTGAGTACCAGAGTATATCATCATGTTTACGAGATCTCTGAAATTTGCACAAGCAAGCGTGATGATATCGCCATGAATCGAACTCACCTCCTGTGCCTGCTCCTTCTCGCGCTCGGCGAGCAGCTTCTCAAGGCTGGCCTTCTCCCCCTCGAGCTTCGCCACCGCCTCCTCCCTCTCCGCGATCGCTCGCGCCGCCATTGCCGCGAGCCGCTCCGCCCGCCGCCGCCTCCTCTCCTCCTCCCTCCGCCTCTCCTCCTCCGAGTCCTCCGAGTCGTCGCTGCCCGACCCATCCGAGTCGTCCTCATCGCTCCCGCTCCCGCTCTCCGACCCGCCGCCTTTGTCCTCCTCCCGATCTCCCCCCACCTTAGCCTCGGCCACGCCCCCCACAGCAGCACCCGCCGCGCGATCCTGGGCAGCGAGAACCGCAGTCGCGGAGGCGGAGCGGCGGGGGGCAGGGGAAGCGGGAGCAGGAGCCGGAGGCGGAGGCAGGTTGGGGCGCCTCGCGGCGAGGCGGAGGCCGAGGGAGGGAGGCGGGGCGACCGGCGGCTGCCTCCGCGTCGGGGCGTCGAGGAGGGCGTCGGCGGCGGAGGAGGAGGAGGAGGCGTGCAGCGCGGTGAGGTCGGAGGCCGACGGGGACTTGCCGAGGGACTCCGCCGCCTGCTGGTCGATCTGCGCGACACGAGCGAAGAAGAAGAAGAGGGGTTAGTGGGGTTGAGGGGGAGCGAGCGAAGGTGAGGTGGGGGACCGGGGGGGGGGGGCTTGCTTGGTGGAGGAGGGTCTCGGCGGCCTTGAGCTTGGAGGAGATCCAGCCGGCCATGGCGCGGCTGCGCGTGGGAAATCGCGGTCGCGGGTTGGGTTGAGTCGACGGCCGGCAGC
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| CDS seq | ATGGCCGGCTGGATCTCCTCCAAGCTCAAGGCCGCCGAGACCCTCCTCCACCAAATCGACCAGCAGGCGGCGGAGTCCCTCGGCAAGTCCCCGTCGGCCTCCGACCTCACCGCGCTGCACGCCTCCTCCTCCTCCTCCGCCGCCGACGCCCTCCTCGACGCCCCGACGCGGAGGCAGCCGCCGGTCGCCCCGCCTCCCTCCCTCGGCCTCCGCCTCGCCGCGAGGCGCCCCAACCTGCCTCCGCCTCCGGCTCCTGCTCCCGCTTCCCCTGCCCCCCGCCGCTCCGCCTCCGCGACTGCGGTTCTCGCTGCCCAGGATCGCGCGGCGGGTGCTGCTGTGGGGGGCGTGGCCGAGGCTAAGGTGGGGGGAGATCGGGAGGAGGACAAAGGCGGCGGGTCGGAGAGCGGGAGCGGGAGCGATGAGGACGACTCGGATGGGTCGGGCAGCGACGACTCGGAGGACTCGGAGGAGGAGAGGCGGAGGGAGGAGGAGAGGAGGCGGCGGCGGGCGGAGCGGCTCGCGGCAATGGCGGCGCGAGCGATCGCGGAGAGGGAGGAGGCGGTGGCGAAGCTCGAGGGGGAGAAGGCCAGCCTTGAGAAGCTGCTCGCCGAGCGCGAGAAGGAGCAGGCACAGGAGGCTTCAGAGTTGCAGAATAGCATGATTGAAACTATGGAGGCTGTGGAGATGGAGAAACAGCGACACCACAGCACTAGAATGGAAGCCCTTGCACGGTTGGCTAAGCTTGAGGTTACAAATGCAGAGCTTGCAAAGTCACTTGCGAGGGAACAGTGGAACCTGGATCTTCAAGTTGATCAGGTGGCACAACTTCGAGAGGAAGTTGATATGAAGACTCTTACTCAAGATAAATATAAGAGAAAGATAGCAAAGATGCAGAAGACTAGCCCCCTTTTGGTTAATGAAATAGAATCGTTGAGAAGGTTCAAGCTGGAAGAAGAAATGATTGATGCAGAGTATGCTCTAACATGTGATAGAATCGTCAACTTGAAAGACAAGGCAAGGAAGATTAAAGAAAACATTGAGCTGACAAAAAGAAGAATGGTGCATCCTACAGAAGTGGAAATTGAACTCAAGAAGAGACTTGATCAACTCACTGATCGTTTAATTCAGAAACAGATGCAGGTTGAGTCCCTCTCTTCAGAGAAAGCAGCCTTGTTACTGAGAATAGAGGCAGTTTCAAGATCGCTTGACAATAACGGATCATCATCGTTGGCTTATTCGAGCTCCTCGTCAAAGATAGATATCGAAGCTGGTACATGGCAAGAATCACACCCGCCAAGGTTGCGTGACAGGATACGGAATGGACAGCGGCAACTGGGATCGGCAATCCGACAGCTCGATTCCATCTTCTCCGCTGGCCATATCTTCTTGAGGCGGAATCCTAAGGCGCTAGTTTGGGCCATGGTGTACCTGGTGTGCCTCCACATATGGGTCCTGTACATACTAACGTCACATCCGACAATATCAGAAGCTCGCCCTGGTGCTACATTTTCGTTGGAGTCATTAAACAAGACTGGTATTTAA
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| Protein seq | MAGWISSKLKAAETLLHQIDQQAAESLGKSPSASDLTALHASSSSSAADALLDAPTRRQPPVAPPPSLGLRLAARRPNLPPPPAPAPASPAPRRSASATAVLAAQDRAAGAAVGGVAEAKVGGDREEDKGGGSESGSGSDEDDSDGSGSDDSEDSEEERRREEERRRRRAERLAAMAARAIAEREEAVAKLEGEKASLEKLLAEREKEQAQEASELQNSMIETMEAVEMEKQRHHSTRMEALARLAKLEVTNAELAKSLAREQWNLDLQVDQVAQLREEVDMKTLTQDKYKRKIAKMQKTSPLLVNEIESLRRFKLEEEMIDAEYALTCDRIVNLKDKARKIKENIELTKRRMVHPTEVEIELKKRLDQLTDRLIQKQMQVESLSSEKAALLLRIEAVSRSLDNNGSSSLAYSSSSSKIDIEAGTWQESHPPRLRDRIRNGQRQLGSAIRQLDSIFSAGHIFLRRNPKALVWAMVYLVCLHIWVLYILTSHPTISEARPGATFSLESLNKTGI |
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| Function | Golgin candidate 2 [UniProtKB/Swiss-Prot:B0F9L7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0652500 | OsNip_04t0652500-00 | Chr04 | 33225809 | 33230258 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCCGGCTGGATCTCCTCCAAGCTCAAGGCCGCCGAGACCCTCCTCCACCAAATCGACCAGCAGGCGGCGGAGTCCCTCGGCAAGTCCCCGTCGGCCTCCGACCTCACCGCGCTGCACGCCTCCTCCTCCTCCTCCGCCGCCGACGCCCTCCTCGACGCCCCGACGCGGAGGCAGCCGCCGGTCGCCCCGCCTCCCTCCCTCGGCCTCCGCCTCGCCGCGAGGCGCCCCAACCTGCCTCCGCCTCCGGCTCCTGCTCCCGCTTCCCCTGCCCCCCGCCGCTCCGCCTCCGCGACTGCGGTTCTCGCTGCCCAGGATCGCGCGGCGGGTGCTGCTGTGGGGGGCGTGGCCGAGGCTAAGGTGGGGGGAGATCGGGAGGAGGACAAAGGCGGCGGGTCGGAGAGCGGGAGCGGGAGCGATGAGGACGACTCGGATGGGTCGGGCAGCGACGACTCGGAGGACTCGGAGGAGGAGAGGCGGAGGGAGGAGGAGAGGAGGCGGCGGCGGGCGGAGCGGCTCGCGGCAATGGCGGCGCGAGCGATCGCGGAGAGGGAGGAGGCGGTGGCGAAGCTCGAGGGGGAGAAGGCCAGCCTTGAGAAGCTGCTCGCCGAGCGCGAGAAGGAGCAGGCACAGGAGGCTTCAGAGTTGCAGAATAGCATGATTGAAACTATGGAGGCTGTGGAGATGGAGAAACAGCGACACCACAGCACTAGAATGGAAGCCCTTGCACGGTTGGCTAAGCTTGAGGTTACAAATGCAGAGCTTGCAAAGTCACTTGCGAGGGAACAGTGGAACCTGGATCTTCAAGTTGATCAGGTGGCACAACTTCGAGAGGAAGTTGATATGAAGACTCTTACTCAAGATAAATATAAGAGAAAGATAGCAAAGATGCAGAAGACTAGCCCCCTTTTGGTTAATGAAATAGAATCGTTGAGAAGGTTCAAGCTGGAAGAAGAAATGATTGATGCAGAGTATGCTCTAACATGTGATAGAATCGTCAACTTGAAAGACAAGGCAAGGAAGATTAAAGAAAACATTGAGCTGACAAAAAGAAGAATGGTGCATCCTACAGAAGTGGAAATTGAACTCAAGAAGAGACTTGATCAACTCACTGATCGTTTAATTCAGAAACAGATGCAGGTTGAGTCCCTCTCTTCAGAGAAAGCAGCCTTGTTACTGAGAATAGAGGCAGTTTCAAGATCGCTTGACAATAACGGATCATCATCGTTGGCTTATTCGAGCTCCTCGTCAAAGATAGATATCGAAGCTGGTACATGGCAAGAATCACACCCGCCAAGGTTGCGTGACAGGATACGGAATGGACAGCGGCAACTGGGATCGGCAATCCGACAGCTCGATTCCATCTTCTCCGCTGGCCATATCTTCTTGAGGCGGAATCCTAAGGCGCTAGTTTGGGCCATGGTGTACCTGGTGTGCCTCCACATATGGGTCCTGTACATACTAACGTCACATCCGACAATATCAGAAGCTCGCCCTGGTGCTACATTTTCGTTGGAGTCATTAAACAAGACTGGTATTTAA
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| Protein seq | MAGWISSKLKAAETLLHQIDQQAAESLGKSPSASDLTALHASSSSSAADALLDAPTRRQPPVAPPPSLGLRLAARRPNLPPPPAPAPASPAPRRSASATAVLAAQDRAAGAAVGGVAEAKVGGDREEDKGGGSESGSGSDEDDSDGSGSDDSEDSEEERRREEERRRRRAERLAAMAARAIAEREEAVAKLEGEKASLEKLLAEREKEQAQEASELQNSMIETMEAVEMEKQRHHSTRMEALARLAKLEVTNAELAKSLAREQWNLDLQVDQVAQLREEVDMKTLTQDKYKRKIAKMQKTSPLLVNEIESLRRFKLEEEMIDAEYALTCDRIVNLKDKARKIKENIELTKRRMVHPTEVEIELKKRLDQLTDRLIQKQMQVESLSSEKAALLLRIEAVSRSLDNNGSSSLAYSSSSSKIDIEAGTWQESHPPRLRDRIRNGQRQLGSAIRQLDSIFSAGHIFLRRNPKALVWAMVYLVCLHIWVLYILTSHPTISEARPGATFSLESLNKTGI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.907844 | 1.008516 | 2.051973 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g55810 | RBH | 0.254552 | 0.417256 | 0.345069 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0652500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0029140 | RBH | 0.000000 | 2.303095 | 2.431484 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0029910 | RBH | 0.000000 | 1.819936 | 0.466777 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0029480 | RBH | 0.390047 | 2.054538 | 4.234356 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0029310 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0029570 | RBH | 2.023586 | 7.716413 | 5.021607 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0523900 | RBH | 2.661647 | 7.108946 | 9.751808 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0028210 | RBH | 0.000000 | 0.328686 | 0.068790 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0528900 | SBH | 22.4450685 | 3.0317205 | 6.5062555 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0028650 | RBH | 0.225836 | 0.065530 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0028490 | RBH | 0.113044 | 5.462657 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0028600 | RBH | 3.061382 | 8.205657 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0029180 | RBH | 0.424327 | 0.363314 | 0.707841 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0029170 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G028620 | RBH | 0.167894 | 1.321613 | 1.571553 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0028410 | RBH | 0.000000 | 0.000000 | 3.100192 |
