Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0632300 | OGI:04027370 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:32183880-32187311 | ||||||||
| Gene Symbol | SDRLK-54 | ||||||||||
| DNA seq | GCACATGGAACCACTTATTTATTTTTACCCATATGTTGCAAATCGGATTAGGGGTACATCAATCTGCTTATGCAATGCATTCTTTTACAAGATCTATAAACCTCAGCTCCTACTGTAGTAATGTACAACTGCAGAAACTGCTTGAGAGTTTAATCTCTTACAGTCTAGCGGCCTTCTAGCGCTGTCAGGCTCGCGTTATTAACGGAACTTTCCGAGCCTTGTCTTTCTTCTTCGTCGTAATGCCTTTGCACGAAATATATAGGCTGCTTCGGTATTGGGCGTGCCATGTCCTCGTTGTCCAGCATCGACACAACTAATGACATATGCGGCCTGGCATTTGGGCTGTCCTGAACACACAATAGTCCAATATGGATGCATTGCAATACTTCATTAAGCAAACAGCTCTCCAGAACCATTTTGTCTACGAAAGCCTCTGCCATTCCATCTTTCCACAAGTTCCATGCCTGAAAGTAATAACATTAGTAAAGATTTCTTAACTTGTTTTAACTATATTGTGTTCGAATTGTTAACATAAGTATTGGTAGCAGCATGCACTTACATAAGCTATAAGGTTCGGAAAATCCATCACAATATGATGAGGGGAGCTGATCTTTAATCCACTTACAATCTCCAGTAGCAATACGCCAAAGCTATAGGTGTCAGATTTGACTGAAAAAATGCCTTCCATTGCATATTCAGGTGCCATGTAGCCGCTATTTAAATCATTTGCAAGCAAGCAGGAAAAAAGTGAATAAGTTCAAGCACATGAATATGTTGAACTAGTCGGCTAGAGAACAAGTCCACTTACTAGGTCCCAACGACTCGTCTAGTACTTGCTTGCTGTTCACTGTTTCCAAAAATCCTTGCCATACCAAAATCTGATATTTTTGGGTTCATCTCTGCATCCAACAAGATGTTGCTTGTCTTGAGATCTCTATGAATTATCATCATTCTTGAATCTTGATGGAGATAAAGAAGTCCTCTAGCTACCCCTTTGATTATGTTAAACCTTGTTTGCCAATCAATCACAGACTTCATTGCGTGATCTACCAAGAAAATGGATAATGGACAGGAATGAAACCATTAGAGAATTCGATAATGTTGACTCCTCCATTAGAGTATGCACTTTGTCTTAATGGAAATTCAGGTGGGGAACCTCTCCCCTCCGGTGAACATTCCAAAAAAAAAAAATCAAGACTTTTTTTTAATGCATCCTTTTCTGAAAAACAAGCTTTTCATTTAATATCTGATAAAACTTACCAAAGAGGAATTTGTCTAAGCTTTTGTTGGGTAAGTATTCATAAATAAGCAACTTCTCATCTCCATGAATGCAACAACCAAGAAGTCTAACTAGGTTCTTATGCTGCAGTTTTGCAATAAGAACTACTTCATTCCTAAATTGCTCTACCCCTTGCTCAGAATCCTTGTTAAGCCTTTTAACAGCAACTTCCATGCCATCTTCCAATGTTCCCATGTGAGTATTTCCATTACCATGGAGACATGGTGTTAAACAAGAATAAAGTGACATGAATGCTACACTCACATTGTGTAATTTACAAGGTAAAATTTTATACCACCTTATATACTTTGCCAAAACCACCTTTTCCAAGCATGTTAGTTTCATGGAAACCGTTTGTTGCAGAGGTGAGGTCTTCATAGCTAATATCAGGGAACTCTAGATTTTGATCCCATGAGTCATGAAAAGCACTCAAGTATCCTAGCTCCGTTTTTTTAAGTACTTCCTTGTTTCGTCGTATGCCTAATATAAATATCAAAACATGTCAACACAACAATATTACATTTAGCAGCTGCATATTGCAAGTAGCTGTTATCTCTTGCTTTACCTCTTGACTCGCATTTACAGAGTACAACGCATGAGCATGCTGTCAGTATCAGCAGGCATGCTATAGCTGGGAGTACAATCTTTACAATGTTCTTGTTGTTTACTGCAGAATGACATTTATCGTCATGTTCATGGAGAATGTGGGGCAATTGCTAGAGAAAACATCATGAGACGGCGCATACCTGCAGGAGAGCCGGCGAGTCGAAGGTACAGGTTCTCACCAACGGCACTGGCTTTCTCCGAGTCGAGAAGCTCCCCCATCCATACCAAGCACCTTGAGGGGTCACCCGTCGTGAGGATAGTTCTCAAGTTGGCATAAGCGTATGCCGTGCACGAGCAGTTGCGGTCGCACTCATCGGCACACTCCTCAAAGGTTCTGTTCCTGATGTACAAGAACTTGTCCGGCACCTTCATCCCTGGTAAGGTGAAGAAATGGTCTTGGCCACCGCATCTCAGCTCCTCCTTTCTTCGGCATCCTCTGGAAGAGTTGAGGCTAAATCCATCGGCCGGCTCGAAGCCATCAAGGCACTTGCACTCCTGGAAGCTGCCGGTGATGTCGCAGTAGCCGAACGGCCCGCAGGCGCCGTAGTGGAGACAGCCATGGCCTGGTCGCTCGAATGGGCTCGTCCAAGTCGATGATACGTTGTTCCATGCCCGGAAGCTCACGTTCCCGGTGTAGTCCAGCTTCCAGTGTGTCAAAATGCCATCAGCTGCGTTGTATATCGCGTAGATCTCCTCGCCATTGTCAACGATCTGGGACCATATGTACCTGGTGAGGCCGGTGGCCGTCGCGCCGTTCCAGACACCGCTGCGCCACGACGGGCTCGCCCCATGCCAGATGACGATATGGAGCCCCCACTGGTCAGGGTCACCGCTGAGGGAGAACTCGCAGGTGGACGGGTCGCGACGACCCCTCCAAGCAACTACGCGCACCGCCTCATGGTTCTTGTATGTTCGTCCATAGCTTGAAGCCAGGGAGGCCAGGGAGGATCGTGTCCGTGGGGTGATCGGGCAACCGGAGCACGAAGTTGCCCGTGTTCTGCAGCACCGCGGTGGCTCCACCACCTCCGATGGTGACCGTGTTCGCCGTGGTCCCCTTGGAGTCGGATAGCACAAGCCCGGAGGTGTTGGTAACAGCCAGCCTCGCCGTATGGGTGGTGATTGGGTTGTCGCGGTTGGCGACCCAGACATAGGTGCGCTCCGGGATGTTGTTGTACCATATGCCAAGGTAGAGCAGGCTTGGGGTTGAGTTGGTGGTGGTCAGGGAGAAGAAGCCGACAGCAAAGACGCCGCCATCCGAGATGAGCTTGTCGCCGCCGGGGAAGATGAGTGGCTTTGCCGGTGTTAGGCGGTCATCGGATTGGCAGAAACTAATCAAGAACATGAAGATGACTACATGCAGTCTGGTCATATTCTCTTGTAAATTCCTTGGAAAGCACTACAATCCTACATAGAGACGATAGAACAGAGTTGTGAGATTATTGGGCCAACCTTCTTGTCGGCAGTATAGAGTAACTAGTGCAGCTAGCTTCGTAAAAGAGTAGGATTATACTATCGTAATTGTTATATTTCCCAGGCCCTGAAATAGC
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| CDS seq | ATGACCAGACTGCATGTAGTCATCTTCATGTTCTTGATTAGTTTCTGCCAATCCGATGACCGCCTAACACCGGCAAAGCCACTCATCTTCCCCGGCGGCGACAAGCTCATCTCGGATGGCGGCGTCTTTGCTGTCGGCTTCTTCTCCCTGACCACCACCAACTCAACCCCAAGCCTGCTCTACCTTGGCATATGGTACAACAACATCCCGGAGCGCACCTATGTCTGGGTCGCCAACCGCGACAACCCAATCACCACCCATACGGCGAGGCTGGCTGTTACCAACACCTCCGGGCTTGTGCTATCCGACTCCAAGGGGACCACGGCGAACACGGTCACCATCGGAGGTGGTGGAGCCACCGCGGTGCTGCAGAACACGGGCAACTTCGTGCTCCGGTTGCCCGATCACCCCACGGACACGATCCTCCCTGGCCTCCCTGGCTTCAAGCTATGGACGAACATACAAGAACCATGA
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| Protein seq | MTRLHVVIFMFLISFCQSDDRLTPAKPLIFPGGDKLISDGGVFAVGFFSLTTTNSTPSLLYLGIWYNNIPERTYVWVANRDNPITTHTARLAVTNTSGLVLSDSKGTTANTVTIGGGGATAVLQNTGNFVLRLPDHPTDTILPGLPGFKLWTNIQEP |
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| Function | S-locus-specific glycoprotein S13 [UniProtKB/Swiss-Prot:P17840] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0632300 | OsNip_04t0632300-01 | Chr04 | 32183880 | 32187311 | - | RAP2018-11-26 | ||
| CDS seq | ATGACCAGACTGCATGTAGTCATCTTCATGTTCTTGATTAGTTTCTGCCAATCCGATGACCGCCTAACACCGGCAAAGCCACTCATCTTCCCCGGCGGCGACAAGCTCATCTCGGATGGCGGCGTCTTTGCTGTCGGCTTCTTCTCCCTGACCACCACCAACTCAACCCCAAGCCTGCTCTACCTTGGCATATGGTACAACAACATCCCGGAGCGCACCTATGTCTGGGTCGCCAACCGCGACAACCCAATCACCACCCATACGGCGAGGCTGGCTGTTACCAACACCTCCGGGCTTGTGCTATCCGACTCCAAGGGGACCACGGCGAACACGGTCACCATCGGAGGTGGTGGAGCCACCGCGGTGCTGCAGAACACGGGCAACTTCGTGCTCCGGTTGCCCGATCACCCCACGGACACGATCCTCCCTGGCCTCCCTGGCTTCAAGCTATGGACGAACATACAAGAACCATGA
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| Protein seq | MTRLHVVIFMFLISFCQSDDRLTPAKPLIFPGGDKLISDGGVFAVGFFSLTTTNSTPSLLYLGIWYNNIPERTYVWVANRDNPITTHTARLAVTNTSGLVLSDSKGTTANTVTIGGGGATAVLQNTGNFVLRLPDHPTDTILPGLPGFKLWTNIQEP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0632600 | SBH | 0.426749 | 0.950430 | 3.031546 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g54080 | SBH | 0.264270 | 0.164003 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0632300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0027810 | RBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0028560 | RBH | 0.047108 | 0.229314 | 0.848784 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0028230 | SBH | 0.369437 | 0.739790 | 2.057186 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0028030 | SBH | 0.031282 | 0.013722 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0028290 | SBH | 28.615248 | 3.884939 | 5.803555 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0328500 | SBH | 2.370298 | 0 | 0.023448 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0026980 | SBH | 0.129210 | 0.011754 | 0.285752 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0510900 | RBH | 3.4301045 | 2.6218555 | 4.6655365 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0027390 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0027200 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0027280 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0027820 | RBH | 0.128691 | 0.086759 | 0.434129 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0027880 | SBH | 0.0 | 0.604004 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G027270 | SBH | 0.000000 | 1.307432 | 0.246799 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0027160 | RBH | 0.766234 | 0.0 | 0.641462 |
